CsGy3G030940.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G030940.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	29 kDa ribonucleoprotein, chloroplastic
Location	Gy14Chr3: 30788250 .. 30790509 (-)
Sequence length	1315
RNA-Seq Expression	CsGy3G030940.2
Synteny	CsGy3G030940.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTCTCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCCCATCCCTAACCCTCAAAACTCTATCTTCTTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCTCAAATCCCATTTCCATCTCTTCTTTTCTTCTTCCTTCTCATAGGGTTTCTCCTCCTTTTTCCTCTCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGGCCAGGAAGAAGGCACTCTTGAGGTCGATGGAGACGACTCCAGCTACGCTCCTGATCTCAAATTGTTCGTCGGAAATCTTCCTTTCACTGTCGACAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGGCAAGTTGAAAGAGTCGAGGTACTTTTCCTTCTATTAGTGTGTTATTACGTGTTTTTGTTTTCTCAAGAGACCCATTTGGTTTGCCCTAATTTTCTTGAAGGTAATTTATGACAAGACGACGGGAAGAAGCAGGGGATTTGGTTTTGTTACAATGTCGACTGTTGGTGAGGTTGAAGCAGCTGCTCAGCAATTTAATGGCTATGTAAGTCGCTTCATACACCCTGTTTACGCCAGCTTAATACTCTGCACTACTGGTTTTGGGTATGATTCATTTTCTCCTTGCCTAATCAATTGCTGTCAAGTACCAACTCAATTGAAAAAAAGTAGGAAGTTATAGAGCTATCAAGTTTTGAACATCAAATTATCAACGAACTCGTTTTATTTAGAGAACTCATCCTAGTGATGGTTCTCTTGCTCGGTCTTATTTCTTGGGGCAAAACGTATGTATAGATTATCTGCTTCCATGGTGTTTTTTGAGGTGTAATTTTAACGCCAGTAGTTTCAAAGTTTCACCTCTGTGCTCCATTTACTTAGTGTTATCCTTCATTTTCAGTCAAATCTTAGTATTGGATTTGCTTCTGGTTAATGATTCTTGGTCAACTTTTTACAGGAACTCGATGGGAGATTACTAAGGGTAAACTATGGACCCCCTCCACCAAAAAGGGACGATTCCTCTTTCAGAGGTTCTAGAAATGCTTCAAGATTTGATAACCGCAACCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAAAAGGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAAGTCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCAGAGGAAGTTAACGAGGCCATTCAGTCCTTGGATGGAGTTGTAAGTTCACACCGACCCTTCGTTTTTATGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGATGAAACTTGATATATGCCCTCACGTTCAAATAAAACCTTGCTTACTGAACTCAAGAGATAGACAGCATTAAGGACCAATTGCTATAAAAATGAAATCCTCTTCATGTAATCAGGTTAACCACGATTTTGTTGTAGCATCTTTGCTTATATATCCCTGTTTAATTTTCAATTTATTCCCATGCATTAATGACTTTTTTCGATTTGCTTCACTTGTTTTCTTCGTTTATTTTCTTTTGTTGTTCCCATCTGTGATATTTCTTGTGGTGGAATGTTTTATCTCAGTTTATCATTTTTCTTTTCTTACGAAACTCATCTCATGCATGGTGCTCCGAAGTGTATGATTTGGAATCAAGCGTCATTCATATAACTAAGTAAAAATGTATTCATTGCAGGACTTGGACGGAAGACCCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCGAGGCGCCAGTTTTGAGTATCAGCAGCTTTTATTTATAAAGAATTAACGTGGTTTTTGAGCTCTTATATTAACCTTATTTTACTATGGTATGTTCTCCGATAGTAAATGGTGCCGAATGATTTAGTGTACTTTTCTCTTTCGTCGATGATATTTGATATATTTTTTTCTTCTAATTTTGCATTCAACTAAGATTAAAACCATATCATGCTGCGTCGTGCCCAAACTCATTTGGAAGCAGAGAGTTAATTCCAATGTTTTTAAGATAGAAGACACTATAGTATTGTACCCCAAGGCTGAGGGTACAGAATATCGTTTTTAAGACAACATGTGAAAGCAGGTGCTTACACCTCTAGGAGGATTATATGCCCCGGATCTATTTGTATTCAAAACGTAGTTGGGTTGGTTTGGCTTGGTTTGAAGTTGAATCGATAAGTATTTTGCAAATGGAACCAAATCAC

mRNA sequence

GGCTTCTCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCCCATCCCTAACCCTCAAAACTCTATCTTCTTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCTCAAATCCCATTTCCATCTCTTCTTTTCTTCTTCCTTCTCATAGGGTTTCTCCTCCTTTTTCCTCTCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGGCCAGGAAGAAGGCACTCTTGAGGTCGATGGAGACGACTCCAGCTACGCTCCTGATCTCAAATTGTTCGTCGGAAATCTTCCTTTCACTGTCGACAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGGCAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGAAGAAGCAGGGGATTTGGTTTTGTTACAATGTCGACTGTTGGTGAGGTTGAAGCAGCTGCTCAGCAATTTAATGGCTATGAACTCGATGGGAGATTACTAAGGGTAAACTATGGACCCCCTCCACCAAAAAGGGACGATTCCTCTTTCAGAGGTTCTAGAAATGCTTCAAGATTTGATAACCGCAACCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAAAAGGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAAGTCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCAGAGGAAGTTAACGAGGCCATTCAGTCCTTGGATGGAGTTGACTTGGACGGAAGACCCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCGAGGCGCCAGTTTTGAGTATCAGCAGCTTTTATTTATAAAGAATTAACGTGGTTTTTGAGCTCTTATATTAACCTTATTTTACTATGGTATGTTCTCCGATAGTAAATGGTGCCGAATGATTTAGTGTACTTTTCTCTTTCGTCGATGATATTTGATATATTTTTTTCTTCTAATTTTGCATTCAACTAAGATTAAAACCATATCATGCTGCGTCGTGCCCAAACTCATTTGGAAGCAGAGAGTTAATTCCAATGTTTTTAAGATAGAAGACACTATAGTATTGTACCCCAAGGCTGAGGGTACAGAATATCGTTTTTAAGACAACATGTGAAAGCAGGTGCTTACACCTCTAGGAGGATTATATGCCCCGGATCTATTTGTATTCAAAACGTAGTTGGGTTGGTTTGGCTTGGTTTGAAGTTGAATCGATAAGTATTTTGCAAATGGAACCAAATCAC

Coding sequence (CDS)

ATGTCTGCCTCTGCGGCTTCTCTCACGCTCCCATCCCTAACCCTCAAAACTCTATCTTCTTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCTCAAATCCCATTTCCATCTCTTCTTTTCTTCTTCCTTCTCATAGGGTTTCTCCTCCTTTTTCCTCTCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGGCCAGGAAGAAGGCACTCTTGAGGTCGATGGAGACGACTCCAGCTACGCTCCTGATCTCAAATTGTTCGTCGGAAATCTTCCTTTCACTGTCGACAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGGCAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGAAGAAGCAGGGGATTTGGTTTTGTTACAATGTCGACTGTTGGTGAGGTTGAAGCAGCTGCTCAGCAATTTAATGGCTATGAACTCGATGGGAGATTACTAAGGGTAAACTATGGACCCCCTCCACCAAAAAGGGACGATTCCTCTTTCAGAGGTTCTAGAAATGCTTCAAGATTTGATAACCGCAACCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAAAAGGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAAGTCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCAGAGGAAGTTAACGAGGCCATTCAGTCCTTGGATGGAGTTGACTTGGACGGAAGACCCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCGAGGCGCCAGTTTTGA

Protein sequence

MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFSSRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSFRGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF*

Homology

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BLAST of CsGy3G030940.2 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 7.5e-83
Identity = 181/289 (62.63%), Postives = 207/289 (71.63%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTL-----SSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRV 60
           M++SA+SL   SLT +TL     +S       FSL PSS    LS+  S           
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSC---------- 60

Query: 61  SPPFSSRFVRNVAVSSDYGQEEGTLEVDGDDS-----SYAPDLKLFVGNLPFTVDSAQLA 120
              FSSRFVR V + SD+ Q E     DGDD      +++PDLK+FVGNLPF+ DSA LA
Sbjct: 61  ---FSSRFVRKVTL-SDFDQIEDV--EDGDDGVEEERNFSPDLKIFVGNLPFSADSAALA 120

Query: 121 GLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGP 180
            LFE AG VE VEVIYDK TGRSRGFGFVTMS+  EVEAA QQFNGYELDGR LRVN GP
Sbjct: 121 ELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGP 180

Query: 181 PPPKRDDSSFR-GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRD 240
           PP KR++SSFR GSR    FD+ NRV+V NLAWGVD   LE LF E+G V++AKVVYDRD
Sbjct: 181 PPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRD 240

Query: 241 SGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 279
           SG+SRGFGFVTY+SAEEVN AI+SLDGVDL+GR IRV+ AEARPPRRQF
Sbjct: 241 SGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.9e-82
Identity = 175/299 (58.53%), Postives = 217/299 (72.58%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISIS------SFLLPSHR 60
           M+ASA+SL         LSS NPK   F ++  +S+ LLS  +S        SF + +  
Sbjct: 1   MAASASSL--------ALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKW 60

Query: 61  VSPPFSSRFVRNVAVSSDYG-QEEGTLEV-DGDDSSYAPDLKLFVGNLPFTVDSAQLAGL 120
            SP  +SRF RNVA++S++  +E+G  +V    + S++ DLKLFVGNLPF VDSAQLA L
Sbjct: 61  NSP--ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP 180

Query: 181 PKRDDSSFRGSRNA-------------SRFDNRNRVHVSNLAWGVDDLTLENLFREKGNV 240
           PKR+D   RG R++             S   + NRV+V NL+WGVDD+ LE+LF E+G V
Sbjct: 181 PKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKV 240

Query: 241 LEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 279
           +EA+V+YDRDSG+S+GFGFVTY+S++EV  AI+SLDG DLDGR IRV++AEARPPRRQ+
Sbjct: 241 VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

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BLAST of CsGy3G030940.2 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 5.4e-81
Identity = 177/293 (60.41%), Postives = 206/293 (70.31%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTL-----SSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRV 60
           M++SA+SL   SLT +TL     +S       FSL PSS    LS+P S           
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSC---------- 60

Query: 61  SPPFSSRFVRNVAVSSDYGQEEGTLEVD---GDDSSYAPDLKLFVGNLPFTVDSAQLAGL 120
              FSSRFVR V +  D+ Q E   + D    ++ +++PDLK+FVGNL F+ DSA LA L
Sbjct: 61  ---FSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAEL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FE AG VE VEVIYDK TGRSRGFGFVTMS+  EVEAA QQFNGYELDGR LRVN GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PKRDDSSFR-------GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVV 240
            KR++SSFR       GSR    FD+ NRV+V NLAWGVD   LE LF E+G V++AKVV
Sbjct: 181 EKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVV 240

Query: 241 YDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 279
           YDRDSG+SRGFGFVTY+SAEEVN AI+SLDGVDL+GR IRV+ AEARPPRRQF
Sbjct: 241 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 289.3 bits (739), Expect = 4.7e-77
Identity = 177/344 (51.45%), Postives = 213/344 (61.92%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPP-- 60
           MSASA+SL+  +     L  S P   +  L PS S +L S+ + +S F   + + S P  
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHL-VSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYGQEEGTLEVDGDDS------SYAPDLKLFVGNLPFTVDSAQLAGL 120
           + SRFVRNVAVSSD+  EE  +  DGDDS      S++PDLKLFVGNL F VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFRGSRNASRFDNR---------------------------------------- 240
           PKR++S  RG R+      R                                        
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ------------------NRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSR 279
                             NR++V NL+WGVDD+ LENLF E+G V+EA+V+YDRDSG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.6e-75
Identity = 171/299 (57.19%), Postives = 205/299 (68.56%), Query Frame = 0


Query: 2   SASAASLTLPSLTLKTLSSSNPKFKL--FSLNPSSSIRLLSNPISISSFLLPSHRVSPPF 61
           S+S +SL    +T +T SS  P   L  FSL PSSS+ L     S+SS  +       PF
Sbjct: 3   SSSVSSLQFLFVTSQTPSSLKPNSTLSFFSL-PSSSLNL-----SLSSSSIGHSASIKPF 62

Query: 62  SSRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQV 121
            S F   VA+ SD+ Q E  +EV  +   ++ DLKLFVGNLPF+VDSA LAGLFE AG V
Sbjct: 63  ESSFSTRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNV 122

Query: 122 ERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSS 181
           E VEVIYDK +GRSRGFGFVTMST  EVEAA QQFNGYE+DGR +RVN GP P KR++SS
Sbjct: 123 EIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSS 182

Query: 182 FRGSRNAS--------------------RFDNRNRVHVSNLAWGVDDLTLENLFREKGNV 241
           F G R  +                      D+ NRV+V NL+WGVDDL L+ LF E+GNV
Sbjct: 183 FGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNV 242

Query: 242 LEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 279
           ++AKVVYDRDSG+SRGFGFVTY+SA+EVN+AI SL+G+DLDGR IRV+ AE R PRRQF
Sbjct: 243 VDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292

[Close]

BLAST of CsGy3G030940.2 vs. NCBI nr
Match: XP_004137828.1 (29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetical protein Csa_002481 [Cucumis sativus])

HSP 1 Score: 539 bits (1389), Expect = 5.00e-193
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of CsGy3G030940.2 vs. NCBI nr
Match: XP_008442686.1 (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK25133.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 483 bits (1244), Expect = 5.84e-171
Identity = 256/278 (92.09%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDS YAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYGPPP KRDDS F
Sbjct: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSL+GVDL GR IRVTQAEA+PPRRQF
Sbjct: 241 YNSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of CsGy3G030940.2 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 471 bits (1211), Expect = 6.45e-166
Identity = 246/278 (88.49%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           MSASAASLTL +LTLKTLS SNPK KLFSLNPSS+ RLLSNP SISS +L S RVSPPFS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSST-RLLSNPSSISSVVLRSQRVSPPFS 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE D +++SYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPP+RDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           RGSRNASRFDN NRVHVSNLAWGVDDLTLENLFRE GNV+EAKVVYDR+SGKSRGFGFVT
Sbjct: 181 RGSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           +NSAEEVN AIQSLDG +L GRPIRVTQAEARPPRRQF
Sbjct: 241 FNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 277

[Close]

BLAST of CsGy3G030940.2 vs. NCBI nr
Match: XP_022935639.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 442 bits (1136), Expect = 1.71e-154
Identity = 233/278 (83.81%), Postives = 249/278 (89.57%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           M+ASA  LTL SLT KTLS SNPKF+LFSLNPSS I   SNPISIS+ +L S RVSP F 
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSS-IGFRSNPISISALVLRSDRVSPAFF 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSD+ QEE  L+VDGDDSSYAPDL+LFVGNLPFT+DSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDK TGRSRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           R S+NAS FDN N VHVSNLAWGVDDLTLENLFRE+GNV++AKVVYDRDSG+SRGFGFVT
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           Y+SAEEVN AIQSLDGVDL+GR IRVTQAEAR PRRQF
Sbjct: 241 YSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

[Close]

BLAST of CsGy3G030940.2 vs. NCBI nr
Match: XP_023538708.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441 bits (1133), Expect = 4.90e-154
Identity = 233/278 (83.81%), Postives = 248/278 (89.21%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           M+ASA  LTL SLT KTLS SNPKF LFSLNPSS I   SNPISIS+ +L S RVSP F 
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFGLFSLNPSS-IGFRSNPISISALVLRSDRVSPAFF 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSD+ QEE  L+VDGDDSSYAPDL+LFVGNLPFT+DSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDK TGRSRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           R S+NAS FDN N VHVSNLAWGVDDLTLENLFRE+GNV++AKVVYDRDSG+SRGFGFVT
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           Y+SAEEVN AIQSLDGVDL+GR IRVTQAEAR PRRQF
Sbjct: 241 YSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 539 bits (1389), Expect = 2.42e-193
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 2.83e-171
Identity = 256/278 (92.09%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDS YAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYGPPP KRDDS F
Sbjct: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSL+GVDL GR IRVTQAEA+PPRRQF
Sbjct: 241 YNSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 2.83e-171
Identity = 256/278 (92.09%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDS YAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYGPPP KRDDS F
Sbjct: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSL+GVDL GR IRVTQAEA+PPRRQF
Sbjct: 241 YNSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 8.29e-155
Identity = 233/278 (83.81%), Postives = 249/278 (89.57%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           M+ASA  LTL SLT KTLS SNPKF+LFSLNPSS I   SNPISIS+ +L S RVSP F 
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSS-IGFRSNPISISALVLRSDRVSPAFF 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSD+ QEE  L+VDGDDSSYAPDL+LFVGNLPFT+DSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDK TGRSRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           R S+NAS FDN N VHVSNLAWGVDDLTLENLFRE+GNV++AKVVYDRDSG+SRGFGFVT
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
           Y+SAEEVN AIQSLDGVDL+GR IRVTQAEAR PRRQF
Sbjct: 241 YSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

[Close]

BLAST of CsGy3G030940.2 vs. ExPASy TrEMBL
Match: A0A6J1KUB7 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498740 PE=4 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 3.22e-152
Identity = 230/277 (83.03%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
           M+ASA  L L SLT KTLS SNPKF+LFSLNPSS I   SNPISIS+ +  SHRVSP F 
Sbjct: 1   MAASATFLPLSSLTPKTLSFSNPKFELFSLNPSS-IGFRSNPISISALVFRSHRVSPAFF 60

Query: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSD+ QEE  L+VDGDDSSYAPDL+LFVGNLPFT+DSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
           RVEVIYDK TGRSRGFGFVTMS V E EAAAQQFNGYEL+GR LRVN GPPPPKRDDSSF
Sbjct: 121 RVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNCGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
           R S+NAS FDN N VHVSNLAWGVDDLTLENLFRE+GNV++AKVVYDRDSG+SRGFGFVT
Sbjct: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVT 240

Query: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQ 277
           Y+SAEEVN AIQSLDGVDL+GR IRVTQAEAR PRRQ
Sbjct: 241 YSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ 276

[Close]

BLAST of CsGy3G030940.2 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 305.8 bits (782), Expect = 3.5e-83
Identity = 175/299 (58.53%), Postives = 217/299 (72.58%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISIS------SFLLPSHR 60
           M+ASA+SL         LSS NPK   F ++  +S+ LLS  +S        SF + +  
Sbjct: 1   MAASASSL--------ALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKW 60

Query: 61  VSPPFSSRFVRNVAVSSDYG-QEEGTLEV-DGDDSSYAPDLKLFVGNLPFTVDSAQLAGL 120
            SP  +SRF RNVA++S++  +E+G  +V    + S++ DLKLFVGNLPF VDSAQLA L
Sbjct: 61  NSP--ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP 180

Query: 181 PKRDDSSFRGSRNA-------------SRFDNRNRVHVSNLAWGVDDLTLENLFREKGNV 240
           PKR+D   RG R++             S   + NRV+V NL+WGVDD+ LE+LF E+G V
Sbjct: 181 PKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKV 240

Query: 241 LEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 279
           +EA+V+YDRDSG+S+GFGFVTY+S++EV  AI+SLDG DLDGR IRV++AEARPPRRQ+
Sbjct: 241 VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of CsGy3G030940.2 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-78
Identity = 177/344 (51.45%), Postives = 213/344 (61.92%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPP-- 60
           MSASA+SL+  +     L  S P   +  L PS S +L S+ + +S F   + + S P  
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHL-VSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYGQEEGTLEVDGDDS------SYAPDLKLFVGNLPFTVDSAQLAGL 120
           + SRFVRNVAVSSD+  EE  +  DGDDS      S++PDLKLFVGNL F VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFRGSRNASRFDNR---------------------------------------- 240
           PKR++S  RG R+      R                                        
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ------------------NRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSR 279
                             NR++V NL+WGVDD+ LENLF E+G V+EA+V+YDRDSG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of CsGy3G030940.2 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-78
Identity = 177/344 (51.45%), Postives = 213/344 (61.92%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPP-- 60
           MSASA+SL+  +     L  S P   +  L PS S +L S+ + +S F   + + S P  
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHL-VSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYGQEEGTLEVDGDDS------SYAPDLKLFVGNLPFTVDSAQLAGL 120
           + SRFVRNVAVSSD+  EE  +  DGDDS      S++PDLKLFVGNL F VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFRGSRNASRFDNR---------------------------------------- 240
           PKR++S  RG R+      R                                        
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ------------------NRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSR 279
                             NR++V NL+WGVDD+ LENLF E+G V+EA+V+YDRDSG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of CsGy3G030940.2 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-78
Identity = 177/344 (51.45%), Postives = 213/344 (61.92%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPP-- 60
           MSASA+SL+  +     L  S P   +  L PS S +L S+ + +S F   + + S P  
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHL-VSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYGQEEGTLEVDGDDS------SYAPDLKLFVGNLPFTVDSAQLAGL 120
           + SRFVRNVAVSSD+  EE  +  DGDDS      S++PDLKLFVGNL F VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFRGSRNASRFDNR---------------------------------------- 240
           PKR++S  RG R+      R                                        
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ------------------NRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSR 279
                             NR++V NL+WGVDD+ LENLF E+G V+EA+V+YDRDSG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of CsGy3G030940.2 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 276.9 bits (707), Expect = 1.7e-74
Identity = 177/365 (48.49%), Postives = 213/365 (58.36%), Query Frame = 0


Query: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPP-- 60
           MSASA+SL+  +     L  S P   +  L PS S +L S+ + +S F   + + S P  
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHL-VSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYGQEEGTLEVDGDDS------SYAPDLKLFVGNLPFTVDSAQLAGL 120
           + SRFVRNVAVSSD+  EE  +  DGDDS      S++PDLKLFVGNL F VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGY--------------- 180
           FESAG VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQFNGY               
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLI 180

Query: 181 ------ELDGRLLRVNYGPPPPKRDDSSFRGSRNASRFDNR------------------- 240
                 E +GR LRVN GPPPPKR++S  RG R+      R                   
Sbjct: 181 RVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGG 240

Query: 241 ---------------------------------------NRVHVSNLAWGVDDLTLENLF 279
                                                  NR++V NL+WGVDD+ LENLF
Sbjct: 241 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 300

The following BLAST results are available for this feature:

BLAST of CsGy3G030940.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	7.5e-83	62.63	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9ZUU4	4.9e-82	58.53	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
P49313	5.4e-81	60.41	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q43349	4.7e-77	51.45	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	2.6e-75	57.19	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of CsGy3G030940.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137828.1	5.00e-193	100.00	29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetic...	[more]
XP_008442686.1	5.84e-171	92.09	PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 ...	[more]
XP_038905951.1	6.45e-166	88.49	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_022935639.1	1.71e-154	83.81	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646....	[more]
XP_023538708.1	4.90e-154	83.81	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G030940.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAY6	2.42e-193	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A5A7TQA3	2.83e-171	92.09	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	2.83e-171	92.09	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A6J1F601	8.29e-155	83.81	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KUB7	3.22e-152	83.03	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CsGy3G030940.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	3.5e-83	58.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	3.4e-78	51.45	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	3.4e-78	51.45	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	3.4e-78	51.45	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	1.7e-74	48.49	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 94..167 e-value: 7.9E-27 score: 105.1 coord: 194..267 e-value: 6.6E-25 score: 98.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 196..265 e-value: 1.1E-16 score: 60.4 coord: 95..164 e-value: 1.2E-18 score: 66.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 93..171 score: 18.785557
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..271 score: 19.058443
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 189..278 e-value: 1.4E-24 score: 88.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 70..188 e-value: 1.4E-28 score: 101.7
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..275
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..275
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 94..167 e-value: 4.90848E-33 score: 113.862
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 188..277
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 88..191

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G030940	CsGy3G030940	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G030940.2.exon4	CsGy3G030940.2.exon4	exon
CsGy3G030940.2.exon3	CsGy3G030940.2.exon3	exon
CsGy3G030940.2.exon2	CsGy3G030940.2.exon2	exon
CsGy3G030940.2.exon1	CsGy3G030940.2.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G030940.2.utr3p1	CsGy3G030940.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G030940.2	cds.CsGy3G030940.2_4	CDS
cds.CsGy3G030940.2	cds.CsGy3G030940.2_3	CDS
cds.CsGy3G030940.2	cds.CsGy3G030940.2_2	CDS
cds.CsGy3G030940.2	cds.CsGy3G030940.2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G030940.2.utr5p1	CsGy3G030940.2.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G030940.2	CsGy3G030940.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding