Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGACAATGTAATGTCAGACAAAGGAAGCATGGTCTCTGGGCAACAAGGGGTCGCCGCAGACAGCTTGTACAAGGAGGGTGCTCAATTGAGCTTCTTGCTTCCGACACAACTTGAATGGAGAAGAGTAGGCCAGCACGGACGAGCGGAGAAGAGGAGACTAACACAGACGAGCTAA mRNA sequence ATGGACAATGTAATGTCAGACAAAGGAAGCATGGTCTCTGGGCAACAAGGGGTCGCCGCAGACAGCTTGTACAAGGAGGGTGCTCAATTGAGCTTCTTGCTTCCGACACAACTTGAATGGAGAAGAGTAGGCCAGCACGGACGAGCGGAGAAGAGGAGACTAACACAGACGAGCTAA Coding sequence (CDS) ATGGACAATGTAATGTCAGACAAAGGAAGCATGGTCTCTGGGCAACAAGGGGTCGCCGCAGACAGCTTGTACAAGGAGGGTGCTCAATTGAGCTTCTTGCTTCCGACACAACTTGAATGGAGAAGAGTAGGCCAGCACGGACGAGCGGAGAAGAGGAGACTAACACAGACGAGCTAA Protein sequence MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS*
Homology
BLAST of CsGy3G025730.2 vs. NCBI nr
Match: KAE8650859.1 (hypothetical protein Csa_000786 [Cucumis sativus]) HSP 1 Score: 115 bits (288), Expect = 2.87e-32 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 Query: 1 MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 58 MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS Sbjct: 1 MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 58
BLAST of CsGy3G025730.2 vs. ExPASy TrEMBL
Match: A0A0A0LE52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G633790 PE=4 SV=1) HSP 1 Score: 115 bits (288), Expect = 1.58e-32 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 Query: 1 MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 58 MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS Sbjct: 6 MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 63
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAE8650859.1 | 2.87e-32 | 100.00 | hypothetical protein Csa_000786 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LE52 | 1.58e-32 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G633790 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 53..58 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CsGy3G025730.2.exon1 | CsGy3G025730.2.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
cds.CsGy3G025730.2 | cds.CsGy3G025730.2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CsGy3G025730.2 | CsGy3G025730.2-protein | polypeptide |
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