CsGy3G024277.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G024277.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cell wall protein DAN4-like
Location	Gy14Chr3: 24285884 .. 24286231 (+)
Sequence length	348
RNA-Seq Expression	CsGy3G024277.1
Synteny	CsGy3G024277.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCAGGTTCCTCTGCTGATTCCCCATCAATCTCAGTGGCTCCTGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCAGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGGTTTTTTGGTTGA

mRNA sequence

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCAGGTTCCTCTGCTGATTCCCCATCAATCTCAGTGGCTCCTGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCAGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGGTTTTTTGGTTGA

Coding sequence (CDS)

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCAGGTTCCTCTGCTGATTCCCCATCAATCTCAGTGGCTCCTGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCAGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGGTTTTTTGGTTGA

Protein sequence

MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG*

Homology

[Close]

BLAST of CsGy3G024277.1 vs. NCBI nr
Match: XP_031737565.1 (putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_017464 [Cucumis sativus])

HSP 1 Score: 176 bits (445), Expect = 1.93e-54
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  TTTT--SSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 115
           TTTT  SSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 117

[Close]

BLAST of CsGy3G024277.1 vs. NCBI nr
Match: KAE8650786.1 (hypothetical protein Csa_017544 [Cucumis sativus])

HSP 1 Score: 172 bits (435), Expect = 6.23e-53
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  TTTTSSSS-GSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 115
           TTTTSSSS GSS  SPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 116

[Close]

BLAST of CsGy3G024277.1 vs. NCBI nr
Match: KGN58213.1 (hypothetical protein Csa_017497 [Cucumis sativus])

HSP 1 Score: 132 bits (332), Expect = 2.44e-37
Identity = 95/116 (81.90%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVA+TG VAQGPTSSTPAPTTSSTPAP TSS      SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSS-----SSSSSLDSTTT 60

Query: 61  TTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 115
           TTTTSS  GSS DSPSIS APGL+PDS AQSPTTA SP+GS S ETSR F+NGFFG
Sbjct: 61  TTTTSS--GSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of CsGy3G024277.1 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 2.81e-26
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTT 60
           MAYQSLA LALI+VAVTG VAQ P TS T +PTT       TSS DSST SSSSSLDSTT
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTM------TSSVDSST-SSSSSLDSTT 60

Query: 61  TTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 115
           TTTTT+SS    AD+ SISVAP  +PDS AQSPTTA SPTGS S ETSRFFTNGFFG
Sbjct: 61  TTTTTTSS----ADASSISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of CsGy3G024277.1 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 100 bits (250), Expect = 1.25e-24
Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFL LIIVA+TGVVAQ P++S   PT  STPA  TSSFDSST SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTS---PT--STPATMTSSFDSST-SSSSSLDSTTT 60

Query: 61  TTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGF 113
            TTT++SS    D  SIS+AP  +PDS AQSPTTA SPTGS SAETSR F+NGF
Sbjct: 61  PTTTTTSS---TDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL
Match: A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.50e-47
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSS        FDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSS--------FDSSTPSSSSSLDSTTT 60

Query: 61  TTTT--SSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 115
           TTTT  SSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 109

[Close]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 1.18e-37
Identity = 95/116 (81.90%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVA+TG VAQGPTSSTPAPTTSSTPAP TSS      SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSS-----SSSSSLDSTTT 60

Query: 61  TTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 115
           TTTTSS  GSS DSPSIS APGL+PDS AQSPTTA SP+GS S ETSR F+NGFFG
Sbjct: 61  TTTTSS--GSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.36e-26
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTT 60
           MAYQSLA LALI+VAVTG VAQ P TS T +PTT       TSS DSST SSSSSLDSTT
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTM------TSSVDSST-SSSSSLDSTT 60

Query: 61  TTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 115
           TTTTT+SS    AD+ SISVAP  +PDS AQSPTTA SPTGS S ETSRFFTNGFFG
Sbjct: 61  TTTTTTSS----ADASSISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 6.04e-25
Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFL LIIVA+TGVVAQ P++S   PT  STPA  TSSFDSST SSSSSLDSTTT
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTS---PT--STPATMTSSFDSST-SSSSSLDSTTT 60

Query: 61  TTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGF 113
            TTT++SS    D  SIS+AP  +PDS AQSPTTA SPTGS SAETSR F+NGF
Sbjct: 61  PTTTTTSS---TDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.87e-23
Identity = 83/116 (71.55%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTG VAQ P +S   PT  STPA  TSS      SSSSSLDSTT 
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATS---PT--STPATMTSSA-----SSSSSLDSTTI 60

Query: 61  TTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 115
            TTT SS    AD+ SISVAP  +PDS AQSPTTA SPTGS SAETSR FTNGFFG
Sbjct: 61  PTTTISS----ADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 102

The following BLAST results are available for this feature:

BLAST of CsGy3G024277.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G024277.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737565.1	1.93e-54	98.29	putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_...	[more]
KAE8650786.1	6.23e-53	97.41	hypothetical protein Csa_017544 [Cucumis sativus]	[more]
KGN58213.1	2.44e-37	81.90	hypothetical protein Csa_017497 [Cucumis sativus]	[more]
KAA0056285.1	2.81e-26	73.50	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro...	[more]
XP_008450206.1	1.25e-24	72.81	PREDICTED: cell wall protein DAN4-like [Cucumis melo]	[more]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB81	1.50e-47	91.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1	[more]
A0A0A0L8Q5	1.18e-37	81.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1	[more]
A0A5D3C1H7	1.36e-26	73.50	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPQ2	6.04e-25	72.81	cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1	[more]
A0A5D3C1I1	1.87e-23	71.55	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CsGy3G024277.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G024277	CsGy3G024277	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G024277.1.exon1	CsGy3G024277.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G024277.1	cds.CsGy3G024277.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G024277.1	CsGy3G024277.1-protein	polypeptide