CsGy3G002530.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G002530.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1
Location	Gy14Chr3: 1976954 .. 1979774 (+)
Sequence length	1840
RNA-Seq Expression	CsGy3G002530.1
Synteny	CsGy3G002530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTAAAACCCTCAACCCTTCGGTTCAATCGTTTCTTGTAGAATTTCCAGATCTCCGTTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCCTCATTCAGAACATTCGTCCGTACGAATTCTTCCGCCAAATCTTCATCTTCTCCGTTCCCTCTACCTTCCAAATCCACTGCTCCCTCTGTTCGCCGATTCTCGCTCGCCAGGTATCTCTTTTTTTATTATTTCCTTTCTCCTTGTTTCAGTTTTTCTCTTTGTTCTTTTACGAACCTTCTTTAACTACTGTTAGGTCTCCGTCGGAGCTGGGATGTGTTCAATCCCTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAACATGAAATATTATGCTTTCTTTTGAAGTGTGAGTAGCTTTTTTATGCATTAATCTACAGACTTTCCCTTTTTATTGCTCTACAATTTGTTTGTCTGTGTCCTTTTTGTGTTGGTATTTGCTGATTCTTGTTGTCTCTGTCATTGTTGTGTTGTTCCAAAAATCTTGCAGCTTCTGTATGAAGTGGAACATTCTGTTAAAATTGGTGAAATTTAAGTTTAGAAGTCTAGAATATTGGATCGTTGCTTATACTTAAGGAGGTTGGTGGCAAAATTATGTAAAAGATGGGAGGATAAGCTAGAACGTTGAAGTCAACCATCTTGGGGAGAGAAACCATCTTAGATTTGGTCCTCTCCCTTGCCTTCGGTATCTAGTTTCGTTGTTTATTGGTTTCAACTTTTGTCCCCCAGTTAAATTGGTCATTTTCTTTAGTAAGGTTAGTTATTAGAACTGGAATGGAATGAATGGGATGGGTTTGGTTGTTGACTGGGGACCTTGAAACTGACTAGAGTATTTGGTTCCTGCAGGCACATAATATCAATTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTACGGAGCATCAGATTATGGTGCAGTGAATCCATTTCAAGTACGAAACTAATCATCTTTTAGTTGTCCTAATATGTCGAAGATATTCCAATTTCTATTATTGTGATGAACTAGTGGTCTCTGTCAGTGTTGGGTCGGCACTACTTTTAATTACCATTTGAAAAATAAAAGTGTCACATACTGCCTCATTCAGCAGTAGTCAATTCCTGAATCGTTAAATCTTTAGAGTTTCCCTTGGAAAACTTTGACTTGAAGAGTGAACTGCCAAATTTAAGAGAATGGAATGAAAAGTTAGGTTTGCCCATCAATCAGCTTAGTCTTTGCGATCTAGCTATTATCATCCTGAAAGAAAAATTTATCTCGGACAAGAATCTGTTCTATTCTTTTGGAGATCATTACCTTAGAGTAAAGGGATGATCCAGTCCAGTCAATAGATTTAGTTAATTGTAATCCGTTATGTGAAGTAAGCTTTGTTTGTTCGATGATCTGCATCATTTTTGTTTACATCACTTGTGTTTAGCTCACAGATAATCTTATGATTGTTCTTATCATTCAAACCATCAGTTTTCTTTTGTCAAATAATCTATATGACATAACTTCTCATTGCCTCAGATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGCCAGTCACTCTATGCTTCACTAATTTAGAAATATCACTTTTGAGTGATGTGTAAATGGTTCCGCATTAGTTCTTAGTGCCTTTAGTTTACGTGTGTAAATTTAATGAAACCCATCTCATAGATTATTCCTGTGCCACACCTCAACTAATCTTATAGGACAATTGTCTAACCCAGAAAGTATCTATGTGTATGGTCAAATAGATGTTGCATCAGTTATCTTGAATCAGAGATGAGTCATGTTGCATTTTGGACTCTTGGTAGAAATCTACCGACATTCTTAGTCAGCTTTTCTTATGTTGTATTTGTATTCTGTGGCTGCAGAGTTAGGTTTATCCGTTCCAAGGTGACTTTTTCCGGCAAATTGTTGCAGTGACAAGGAGATATCAGTAATGGTTTAGAGGATTTCTTTTATGAACTGTGCCGAATACTGCTCAATTTGGTTAACTAATTTTGATTCATCCAAACAACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGCAACTCAGGAAATCATACTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCCTTTTCATACATTCAATATGTACGTTTGTTATTTATTAAGATACACATCATATTATTTTCTTGCCTTTTGGTATATTATGAAGACAAATTGGATCTTTTTTGCGTACTTCTTAGACAACTAAGAAAATGAGGCCTGCCATGTTTTGTACTATAACTTAAGATATTTGATGGGGTTTGTTGGAAATGATCTTGTATAAGAGATCAGTTTAGCTTGTCGGTCGTCATAGGTACTTGATTGTCAAAGGCTGAAAGAAATTTTTTAGTTCTGTTCTATTGACCTAACGTGTTGAACTAACAAGATATCATGGTCTTAGCTTGTCCATCAATATCAAAGTTTTAAAGAAAATTTCTAAATTTAGTTATGTTCTATTGGACCCAACATGTTGAACTCAGAAAAACCTTAGTTGTGGTTATTGTTCACCTAGTTTATGCATATATCCTTTCAAAAGAGATCAAAGGTGCAAAGAAAAATCTTAGCTTTGTTGTGCTAACTTCACATGTTGAACTCAAAGAAAAATCTTAGCTTTGTTGTGCTAACTTCACATGTTGAACTCAAAGAAAAATCTTAG

mRNA sequence

TATCTAAAACCCTCAACCCTTCGGTTCAATCGTTTCTTGTAGAATTTCCAGATCTCCGTTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCCTCATTCAGAACATTCGTCCGTACGAATTCTTCCGCCAAATCTTCATCTTCTCCGTTCCCTCTACCTTCCAAATCCACTGCTCCCTCTGTTCGCCGATTCTCGCTCGCCAGGTCTCCGTCGGAGCTGGGATGTGTTCAATCCCTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAACATGAAATATTATGCTTTCTTTTGAAGTGTGAGTAGCTTTTTTATGCATTAATCTACAGACTTTCCCTTTTTATTGCTCTACAATTTGTTTGTCTGTGTCCTTTTTGTGTTGGTATTTGCTGATTCTTGTTGTCTCTGTCATTGTTGTGTTGTTCCAAAAATCTTGCAGCTTCTGTATGAAGTGGAACATTCTGTTAAAATTGGTGAAATTTAAGTTTAGAAGTCTAGAATATTGGATCGTTGCTTATACTTAAGGAGGTTGGTGGCAAAATTATGTAAAAGATGGGAGGATAAGCTAGAACGTTGAAGTCAACCATCTTGGGGAGAGAAACCATCTTAGATTTGGTCCTCTCCCTTGCCTTCGGTATCTAGTTTCGTTGTTTATTGGTTTCAACTTTTGTCCCCCAGTTAAATTGGTCATTTTCTTTAGTAAGGTTAGTTATTAGAACTGGAATGGAATGAATGGGATGGGTTTGGTTGTTGACTGGGGACCTTGAAACTGACTAGAGTATTTGGTTCCTGCAGGCACATAATATCAATTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTACGGAGCATCAGATTATGGTGCAGTGAATCCATTTCAAATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGAGTTAGGTTTATCCGTTCCAAGGTGACTTTTTCCGGCAAATTGTTGCAGTGACAAGGAGATATCAGTAATGGTTTAGAGGATTTCTTTTATGAACTGTGCCGAATACTGCTCAATTTGGTTAACTAATTTTGATTCATCCAAACAACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGCAACTCAGGAAATCATACTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCCTTTTCATACATTCAATATGTACGTTTGTTATTTATTAAGATACACATCATATTATTTTCTTGCCTTTTGGTATATTATGAAGACAAATTGGATCTTTTTTGCGTACTTCTTAGACAACTAAGAAAATGAGGCCTGCCATGTTTTGTACTATAACTTAAGATATTTGATGGGGTTTGTTGGAAATGATCTTGTATAAGAGATCAGTTTAGCTTGTCGGTCGTCATAGGTACTTGATTGTCAAAGGCTGAAAGAAATTTTTTAGTTCTGTTCTATTGACCTAACGTGTTGAACTAACAAGATATCATGGTCTTAGCTTGTCCATCAATATCAAAGTTTTAAAGAAAATTTCTAAATTTAGTTATGTTCTATTGGACCCAACATGTTGAACTCAGAAAAACCTTAGTTGTGGTTATTGTTCACCTAGTTTATGCATATATCCTTTCAAAAGAGATCAAAGGTGCAAAGAAAAATCTTAGCTTTGTTGTGCTAACTTCACATGTTGAACTCAAAGAAAAATCTTAGCTTTGTTGTGCTAACTTCACATGTTGAACTCAAAGAAAAATCTTAG

Coding sequence (CDS)

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCCTCATTCAGAACATTCGTCCGTACGAATTCTTCCGCCAAATCTTCATCTTCTCCGTTCCCTCTACCTTCCAAATCCACTGCTCCCTCTGTTCGCCGATTCTCGCTCGCCAGGTCTCCGTCGGAGCTGGGATGTGTTCAATCCCTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

Protein sequence

MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL*

Homology

[Close]

BLAST of CsGy3G002530.1 vs. ExPASy Swiss-Prot
Match: Q6NNL9 (Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NOXY2 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MAS C R  S+ + S+FR+ +   S    S+S F        PS      +R   +LG +
Sbjct: 1   MASRC-RSLSKPAFSAFRSAMNKPSIRPKSASSF----IGVPPSP---GFSRPIGQLGSL 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLP + AVA AR+ SCL  +S++ R+L+QG+LC  +PG+
Sbjct: 61  QSLLPLYSAVASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93

[Close]

BLAST of CsGy3G002530.1 vs. NCBI nr
Match: XP_004147213.1 (uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus])

HSP 1 Score: 191 bits (486), Expect = 3.66e-61
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]

BLAST of CsGy3G002530.1 vs. NCBI nr
Match: XP_008448835.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 188 bits (478), Expect = 6.09e-60
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MASACQRIASRISQSSFRTFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]

BLAST of CsGy3G002530.1 vs. NCBI nr
Match: XP_038903086.1 (protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 184 bits (468), Expect = 2.04e-58
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MASACQRIASRISQSSFRTFVRTN+SAKSSSSPFPLP+KSTAPSVRRFSLARSPSELGC+
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNTSAKSSSSPFPLPAKSTAPSVRRFSLARSPSELGCI 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQGILCCT PGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTYPGL 101

[Close]

BLAST of CsGy3G002530.1 vs. NCBI nr
Match: XP_022154046.1 (uncharacterized protein LOC111021400 isoform X1 [Momordica charantia])

HSP 1 Score: 173 bits (438), Expect = 7.69e-54
Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MASAC RIASRISQSSFR  VRT S  KS SSPFPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1   MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSPGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPGL 101

[Close]

BLAST of CsGy3G002530.1 vs. NCBI nr
Match: KAA0041077.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK12031.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 1.31e-53
Identity = 100/129 (77.52%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLAR-------- 60
           MASACQRIASRISQSSFRTFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLAR        
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARYLSFDPFL 60

Query: 61  --------------------SPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 101
                               SPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG
Sbjct: 61  SPCFNFFSLLFYEPSLSTVRSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 120

[Close]

BLAST of CsGy3G002530.1 vs. ExPASy TrEMBL
Match: A0A1S3BKM3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 2.95e-60
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MASACQRIASRISQSSFRTFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]

BLAST of CsGy3G002530.1 vs. ExPASy TrEMBL
Match: A0A6J1DMJ3 (uncharacterized protein LOC111021400 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021400 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 3.72e-54
Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
           MASAC RIASRISQSSFR  VRT S  KS SSPFPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1   MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSPGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPGL 101

[Close]

BLAST of CsGy3G002530.1 vs. ExPASy TrEMBL
Match: A0A5A7THI0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00430 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 6.34e-54
Identity = 100/129 (77.52%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLAR-------- 60
           MASACQRIASRISQSSFRTFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLAR        
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARYLSFDPFL 60

Query: 61  --------------------SPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 101
                               SPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG
Sbjct: 61  SPCFNFFSLLFYEPSLSTVRSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 120

[Close]

BLAST of CsGy3G002530.1 vs. ExPASy TrEMBL
Match: A0A0A0L1I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 8.75e-52
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CsGy3G002530.1 vs. ExPASy TrEMBL
Match: A0A1S3BL94 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.37e-51
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSSFRTFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CsGy3G002530.1 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-23
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTFVR--TNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELG 60
           MASAC+++ +R S SS ++ +R  T S++ +SS+ F LPS+ T    R FS +R PSELG
Sbjct: 1   MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61  CVQSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           CVQSLLP H  VA AR+ SCLST SRS RALSQG LCCTSP L
Sbjct: 61  CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCCTSPDL 99

[Close]

BLAST of CsGy3G002530.1 vs. TAIR 10
Match: AT4G17310.2 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-18
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 1  MASACQRIASRISQSSFRTFVR--TNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELG 60
          MASAC+++ +R S SS ++ +R  T S++ +SS+ F LPS+ T    R FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61 CVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ 92
          CVQSLLP H  VA AR+ SCLST SRS RALSQ
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQ 89

[Close]

BLAST of CsGy3G002530.1 vs. TAIR 10
Match: AT5G47455.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 7  RIASRISQSSFRTFVRT----------NSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSE 66
          R  SR S SSF++ +R+          +S A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 93
          LGCVQSLLP H  VA AR+ SCLST SRS RAL+QG
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQG 99

[Close]

BLAST of CsGy3G002530.1 vs. TAIR 10
Match: AT5G47455.6 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 7  RIASRISQSSFRTFVRT----------NSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSE 66
          R  SR S SSF++ +R+          +S A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 93
          LGCVQSLLP H  VA AR+ SCLST SRS RAL+QG
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQG 99

[Close]

BLAST of CsGy3G002530.1 vs. TAIR 10
Match: AT5G47455.7 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 7  RIASRISQSSFRTFVRT----------NSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSE 66
          R  SR S SSF++ +R+          +S A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 93
          LGCVQSLLP H  VA AR+ SCLST SRS RAL+QG
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQG 99

The following BLAST results are available for this feature:

BLAST of CsGy3G002530.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNL9	1.6e-06	39.60	Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CsGy3G002530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147213.1	3.66e-61	100.00	uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus]	[more]
XP_008448835.1	6.09e-60	99.01	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
XP_038903086.1	2.04e-58	95.05	protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispid...	[more]
XP_022154046.1	7.69e-54	91.09	uncharacterized protein LOC111021400 isoform X1 [Momordica charantia]	[more]
KAA0041077.1	1.31e-53	77.52	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK12031.1 protei...	[more]

BLAST of CsGy3G002530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKM3	2.95e-60	99.01	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cu...	[more]
A0A6J1DMJ3	3.72e-54	91.09	uncharacterized protein LOC111021400 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7THI0	6.34e-54	77.52	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0L1I6	8.75e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1	[more]
A0A1S3BL94	1.37e-51	98.90	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cu...	[more]

BLAST of CsGy3G002530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17310.1	7.3e-23	59.22	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]
AT4G17310.2	9.3e-18	56.99	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]
AT5G47455.1	1.0e-16	53.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G47455.6	1.0e-16	53.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G47455.7	1.0e-16	53.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156:SF9	OS02G0658300 PROTEIN	coord: 1..100
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G002530	CsGy3G002530	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G002530.1.utr5p1	CsGy3G002530.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G002530.1.exon1	CsGy3G002530.1.exon1	exon
CsGy3G002530.1.exon2	CsGy3G002530.1.exon2	exon
CsGy3G002530.1.exon3	CsGy3G002530.1.exon3	exon
CsGy3G002530.1.exon4	CsGy3G002530.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G002530.1	cds.CsGy3G002530.1	CDS
cds.CsGy3G002530.1	cds.CsGy3G002530.1_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G002530.1.utr3p1	CsGy3G002530.1.utr3p1	three_prime_UTR
CsGy3G002530.1.utr3p2	CsGy3G002530.1.utr3p2	three_prime_UTR
CsGy3G002530.1.utr3p3	CsGy3G002530.1.utr3p3	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G002530.1	CsGy3G002530.1-protein	polypeptide