CsGy2G025950.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G025950.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Autophagy-related protein
Location	Gy14Chr2: 33452872 .. 33456983 (-)
Sequence length	2106
RNA-Seq Expression	CsGy2G025950.2
Synteny	CsGy2G025950.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATCCAGAAGGGCCCAAGTAAGAGAGAAGAACGACTACGGAAATGGTCATTCAAATTGGGGGCTCCTAAATATTCATTGCGAATCATTTCTTCTCTCTTCCTCCATCAATTTCGTTTACTACACAAAGACCTTCTCTCGCTGTCCTTTGATTTTTGGTACCCAATCATTCGATTCCGTTGCTTCCCCATTCCCAAACCCCTCTTCATCATTCTCTATTCTTCTGATTTTTATTTTGGGTGCAGGGAGCTTTTCTTTCCATGGCAAAAAGCTCGTTTAAGTTGGAGCATCCCCTGGGTTAGTTTTTTCTTTGCTCCTACACAAATCGAGGGTCATATTTTGTGATTTCTATCAATTTTTTTGGGGGATTTTTCTTAGTTTTATACGTCCAGTTTGATTACATCGATTGATTGCTTGTAGTCGAAATGATTCAGCTCACGCTTTGTTACTTTTTATTTTTATTTTTTTTTTATTTTTATTATGGCTTCCTCCAATGGTTGAATTTTGATGTGAGTATCAAGACTTCAATTTTAATTGTGATTTTAAATCACTTTGAATTTTGATATGATTAATGTTTTACATATGGGTTTGATGGATGAGATTCAATCCAAATTCTTATGTTTTATGATGAACAACATGAGATTAAAACAACCAATAAACTAATATGTGGGGTTTTTCTGTTGGTTAGAATGTTTATTATAATCAACTATATCAAGTGCAAATTACCATGGCCTGATATTCATACGCATGAACAAACACTTTTGAAATTAACTTGAATTTTGAATTGACATTCTGAACATTCCAGAAAGGAGACAGGTTGAATCTGCTAGGATCCGGGAGAAGTATCCTGACAGAATTCCGGTATGATCTTTGTAATTTAGGGATGCATGCAATGGTTTGAATATTCTTGTAGTTATAATACAATTGTTTGATTTCTGTTGGTTATCTGGTTTAGGTGATTGTGGAAAGGGCTGAAAAGAGTGATGTGCCAGAAATTGATAAGAAAAAGTAAGTTGCTTTCTGTTTTCTTACTAGTTGAAACACATTTCAATCTGATGCTTACGGAAAGCTGAAATGCTATACTACATAGTGCCTTAGCTTGATGGCGGCCAAATTTTATTACCTTGCTCTTTTGGATTGTAGTCCTTTTTGTGGTTAGTGGTAGACTCCTGCATTGTGTTTTTTTCTGGGTAGCTTGATGGCGGCCAAAAAAAAGGTCTTTTGAACGATGTGTGCCTTCTCTTATTGAGAAGATCATTTGAAGTTATTGATATTATTGTTTGTTCTTGATTCATACTTGGTGAAATGGTTCAAATCCTACTATTTTCTTGGTTTAACTAGTTTCTAGCTATTTGAATCCCTGTATCATGTTCAAAAGAATTTTGTTTGTTTTTTTCCATCAATGTTTGATGTCTATGATTGTAACATGTTGAGTAGCACACAAGTAGAAGAATCACTTGTAACATGTTGAGTAGCACAAGTAGAAGAATCACTTATAACATGTTGAGTAGCACAAGTAGAAGAATCACTTGTAACATGTTGAGTAGCACAAGTAGAAGAATCACGTATTAAACTACATAGGGATGGAATGGATATGAAATGCAATATTCTAAAACTACGTTAAGTTTTGGGGGGATATGGGTCGATAAAGCTCTTTTTTACTTCCGATAGGAAAGTGGGTGAGCAAATTGTATGATAGGAATGGTATTATGGTATTAGAAGAGCATATTAATAGTTAGCTAGGGAAGTTTGCGATGAAATTTGGTTACAAATAGAGTGAGAGAGCAAGGAAGTAATTAGGCATTTGATTCAGTTAGTTTAGGGGTTGAGCAATCTCAAGAAAGGGAGGGTCCAAGTTCTTCAAATTATTTGCTTTATCTTGTTTACCTTTATATTGCAATATACTGTTGTCTTGTACTCTTTCCGGTCAAAAGTATAACAATGCCTCTTGAGGGTCTAAAAACTATGTTTCTGAGCCTTAAAATGGTTAACATTAATAAGAACAGCGAGGAACGTGCCAAAAACAAAGATTCCAAGCCTATTTGGAATGATTTTCTTATCCTCACTTAAAAAACATGGTTTTAAAACACTTAAAAAGTTAATTCAAATAGACTCTTAAACATGTTCACCTTAAAAGTTTTGGATTTCCACCTCTGATGGGTGAGAAGTCGAAGCAATCTTCTTCACAAGGCTGTTTATCTAAATGAAGGGTATATTAATTGCAGATATTTAGTTCCTGCTGATTTAACTGTTGGTCAGTTTGTGTACGTGGTCCGAAAGAGGATCAAGCTCAGCCCTGAGAAGGCCATCTTCATTTTTGTGAAGAATATTCTGCCCCCTACAGGTGAAAATATACTTTGAATGCGTTTCTATCATATCTTGCACATAATCTTGCATATTATCATTTTTCTTATTGTAAATAATTGTTTTATTTTGTTCTGTAGCTGCAATGATGTCTGCAATATACGAGGAAAACAAGGACGAAGATGGTTTCCTTTATATGACCTACAGTGGGGAAAACACATTCGGGGCGTGCTGAAACAAAATAAGACAGTAAGACGTAAATGTCTACAGAAAATGGGAAGGGGAAATGATCGTATCTGCTCTTGTATATTCTCCTCACCCCCATCACTTGGCCCTCTGTTTTATCTTTCCAAACGCAATCTGTCTGTATAGTGTTTTTATTTTAATCAACTAAAACCAGTCCTATTTGAATTATTCAAAAGTTGTTGTAAATAACAAGAACTTATAGCAATTTGTGATATGATATCTCATTTGTCGTTTGAAGTTTATGGAAAGGAGTTCGACAAAATGCAGGAAACTAAAAAGGACTACAAAAGTTTTAAGACTACAGAGCTATATTTAAGACCAAGAATGAAAAGAAAAAAACCCAAATGAAGGCCTAAACATATTAGAGTCATTTGGAGACCTTTTTCTGGTACTGATTCTTGACCCATTTGATGCCTACCGAAGTTCCAGATTTCACTTTTTGAGCACCCACAGTTGCAACAGCCTTTGCCTTCACAAATCCTGCTGAGGCTGCTGCCTTTACCTCTGCCATCTTCTTGCTACTATTCCCATTGCTGCTCCCTTTCTTTGTGACCGCATTGTTGTTGTCGTCGTCTTCCACTCCGTAATTTCCTGAACCCCACTGATCAGCCCAGCTTGGTGCTTTGCTTCCCATTTTCAACTATCAAATTCCAAAACATCCATCAAAAACAGCTATCGGTGAACATTATAAATAATTTATGAGGTGGTGTTGGCTAAAAGCATGGATGAATTGAGTTATAATTCTTGGAGAACTTGTAGAATGATGATATCTTTATGTCAAATCAAGAAAATCTTGTCAAATCATGCTTTTGTAGATTATCCCATTGAAATAGAAATCAAATCAGCGACCTTATGGAGAAAGTGGGATATACAGAACAAACAAAAAAATAGAGAAGGGAAAGGGAACAACAAGGCCCAACCTACCTATCAAATCCTCCCTACAGAACAGACAATCTTCAAGAAGAAGAAACAGAAGTCAATTATGTATCTTAGAATATGAATTTGTAAATCATATGGATTTTGCCCTAAAACCAAAACCACGACACCTGTAAAATTTGAAAAAGCAAATTCATAAATCAACCACACTTGTTTTTGGAGAGTCGAAACAAGAGAGAGAGAGAGAGAGTCGTGGAAGAAGATCGTCAAAGGATTGAGAAAAAAACGTAAGCAGCAAAGGAGAGGAGATTGAAAATGAAAGAATAAAGGAAAAAGAGCAGATCAGGTATTGAAGGATGGAATGAGATAGAAATAGAGGTTGAGTAGAGAAGTGAAAGATGAAGGGAAGAATGAAATGAAAGAGAAGGGATTGGATTGGAATAGATCCGAGAGGGAGTGAAAAATGAAATACCTTGAAGATGAAGTTGAAGTTGAAGAAGACGTTGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGGATTGAGGAAGAAGATGAAGAAGATGAAGAAGATGAAGAAGAAGATGAAGAAGAAGAAGTGTGGGGTCTTCGATCTTAGTTTGGTTTCCAAATTCCAAGCTGTATCTACTCCTTTACACGCACTTCACTTCTCCTTTCCTCCCAAAATACT

mRNA sequence

CTGATCCAGAAGGGCCCAAGTAAGAGAGAAGAACGACTACGGAAATGGTCATTCAAATTGGGGGCTCCTAAATATTCATTGCGAATCATTTCTTCTCTCTTCCTCCATCAATTTCGTTTACTACACAAAGACCTTCTCTCGCTGTCCTTTGATTTTTGGGAGCTTTTCTTTCCATGGCAAAAAGCTCGTTTAAGTTGGAGCATCCCCTGGAAAGGAGACAGGTTGAATCTGCTAGGATCCGGGAGAAGTATCCTGACAGAATTCCGGTGATTGTGGAAAGGGCTGAAAAGAGTGATGTGCCAGAAATTGATAAGAAAAAATATTTAGTTCCTGCTGATTTAACTGTTGGTCAGTTTGTGTACGTGGTCCGAAAGAGGATCAAGCTCAGCCCTGAGAAGGCCATCTTCATTTTTGTGAAGAATATTCTGCCCCCTACAGCTGCAATGATGTCTGCAATATACGAGGAAAACAAGGACGAAGATGGTTTCCTTTATATGACCTACAGTGGGGAAAACACATTCGGGGCGTGCTGAAACAAAATAAGACAGTAAGACGTAAATGTCTACAGAAAATGGGAAGGGGAAATGATCGTATCTGCTCTTGTATATTCTCCTCACCCCCATCACTTGGCCCTCTGTTTTATCTTTCCAAACGCAATCTGTCTGTATAGTGTTTTTATTTTAATCAACTAAAACCAGTCCTATTTGAATTATTCAAAAGTTGTTGTAAATAACAAGAACTTATAGCAATTTGTGATATGATATCTCATTTGTCGTTTGAAGTTTATGGAAAGGAGTTCGACAAAATGCAGGAAACTAAAAAGGACTACAAAAGTTTTAAGACTACAGAGCTATATTTAAGACCAAGAATGAAAAGAAAAAAACCCAAATGAAGGCCTAAACATATTAGAGTCATTTGGAGACCTTTTTCTGGTACTGATTCTTGACCCATTTGATGCCTACCGAAGTTCCAGATTTCACTTTTTGAGCACCCACAGTTGCAACAGCCTTTGCCTTCACAAATCCTGCTGAGGCTGCTGCCTTTACCTCTGCCATCTTCTTGCTACTATTCCCATTGCTGCTCCCTTTCTTTGTGACCGCATTGTTGTTGTCGTCGTCTTCCACTCCGTAATTTCCTGAACCCCACTGATCAGCCCAGCTTGGTGCTTTGCTTCCCATTTTCAACTATCAAATTCCAAAACATCCATCAAAAACAGCTATCGGTGAACATTATAAATAATTTATGAGGTGGTGTTGGCTAAAAGCATGGATGAATTGAGTTATAATTCTTGGAGAACTTGTAGAATGATGATATCTTTATGTCAAATCAAGAAAATCTTGTCAAATCATGCTTTTGTAGATTATCCCATTGAAATAGAAATCAAATCAGCGACCTTATGGAGAAAGTGGGATATACAGAACAAACAAAAAAATAGAGAAGGGAAAGGGAACAACAAGGCCCAACCTACCTATCAAATCCTCCCTACAGAACAGACAATCTTCAAGAAGAAGAAACAGAAGTCAATTATGTATCTTAGAATATGAATTTGTAAATCATATGGATTTTGCCCTAAAACCAAAACCACGACACCTGTAAAATTTGAAAAAGCAAATTCATAAATCAACCACACTTGTTTTTGGAGAGTCGAAACAAGAGAGAGAGAGAGAGAGTCGTGGAAGAAGATCGTCAAAGGATTGAGAAAAAAACGTAAGCAGCAAAGGAGAGGAGATTGAAAATGAAAGAATAAAGGAAAAAGAGCAGATCAGGTATTGAAGGATGGAATGAGATAGAAATAGAGGTTGAGTAGAGAAGTGAAAGATGAAGGGAAGAATGAAATGAAAGAGAAGGGATTGGATTGGAATAGATCCGAGAGGGAGTGAAAAATGAAATACCTTGAAGATGAAGTTGAAGTTGAAGAAGACGTTGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGGATTGAGGAAGAAGATGAAGAAGATGAAGAAGATGAAGAAGAAGATGAAGAAGAAGAAGTGTGGGGTCTTCGATCTTAGTTTGGTTTCCAAATTCCAAGCTGTATCTACTCCTTTACACGCACTTCACTTCTCCTTTCCTCCCAAAATACT

Coding sequence (CDS)

ATGGCAAAAAGCTCGTTTAAGTTGGAGCATCCCCTGGAAAGGAGACAGGTTGAATCTGCTAGGATCCGGGAGAAGTATCCTGACAGAATTCCGGTGATTGTGGAAAGGGCTGAAAAGAGTGATGTGCCAGAAATTGATAAGAAAAAATATTTAGTTCCTGCTGATTTAACTGTTGGTCAGTTTGTGTACGTGGTCCGAAAGAGGATCAAGCTCAGCCCTGAGAAGGCCATCTTCATTTTTGTGAAGAATATTCTGCCCCCTACAGCTGCAATGATGTCTGCAATATACGAGGAAAACAAGGACGAAGATGGTTTCCTTTATATGACCTACAGTGGGGAAAACACATTCGGGGCGTGCTGA

Protein sequence

MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC*

Homology

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BLAST of CsGy2G025950.2 vs. ExPASy Swiss-Prot
Match: M1C146 (Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-56
Identity = 109/118 (92.37%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQ E+ARIREKYPDRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 119
           FVYVVRKRIKLS EKAIFIFVKNILPPTAAMMSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy Swiss-Prot
Match: Q8S927 (Autophagy-related protein 8c OS=Arabidopsis thaliana OX=3702 GN=ATG8C PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.8e-56
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFKLEHPLERRQ+ES+RIREKYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQ
Sbjct: 1   MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 118
           FVYVVRKRIKLS EKAIF+FVKN LPPTAAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy Swiss-Prot
Match: Q2XPP5 (Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-55
Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA++SFKLEHPLERRQ ESARIREKY DRIPVIVE+A+K+DVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 119
           FVYVVRKRIKLSPEKAIF+FVKN LPPTA++MSAIYEENKDEDGFLYMTYSGENTFG+
Sbjct: 61  FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy Swiss-Prot
Match: Q69RC4 (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8A PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-55
Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA++SFKLEHPLERRQ ESARIREKY DRIPVIVE+A+K+DVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 119
           FVYVVRKRIKLSPEKAIF+FVKN LPPTA++MSAIYEENKDEDGFLYMTYSGENTFG+
Sbjct: 61  FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy Swiss-Prot
Match: A2YS06 (Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 8.3e-55
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA+SSFKLEHPLERRQ E+ RIREKYPDRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 118
           FVYVVRKRIKLS EKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CsGy2G025950.2 vs. NCBI nr
Match: XP_004151892.1 (autophagy-related protein 8C-like [Cucumis sativus] >XP_008455886.1 PREDICTED: autophagy-related protein 8c [Cucumis melo] >XP_022943693.1 autophagy-related protein 8c [Cucurbita moschata] >XP_022943694.1 autophagy-related protein 8c [Cucurbita moschata] >XP_022986404.1 autophagy-related protein 8c [Cucurbita maxima] >XP_038902002.1 autophagy-related protein 8C-like isoform X1 [Benincasa hispida] >KGN63248.1 hypothetical protein Csa_022236 [Cucumis sativus])

HSP 1 Score: 233 bits (594), Expect = 4.60e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CsGy2G025950.2 vs. NCBI nr
Match: KAA0059575.1 (Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK24205.1 Ubiquitin-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (594), Expect = 5.60e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 7   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 66

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 67  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 125

[Close]

BLAST of CsGy2G025950.2 vs. NCBI nr
Match: XP_023512507.1 (autophagy-related protein 8c [Cucurbita pepo subsp. pepo] >XP_023512508.1 autophagy-related protein 8c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (589), Expect = 2.66e-76
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG C
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGEC 119

[Close]

BLAST of CsGy2G025950.2 vs. NCBI nr
Match: XP_022140546.1 (autophagy-related protein 8c [Momordica charantia])

HSP 1 Score: 227 bits (579), Expect = 8.93e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CsGy2G025950.2 vs. NCBI nr
Match: XP_041008591.1 (autophagy-related protein 8C-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 225 bits (573), Expect = 7.34e-74
Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFK+EHPLERRQ E+ARIREKYPDRIPVIVERAEKSDVP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENK+EDGFLYMTYSGENTFG C
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKEEDGFLYMTYSGENTFGMC 119

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy TrEMBL
Match: A0A6J1FV37 (Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111448369 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.23e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy TrEMBL
Match: A0A6J1JFZ0 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111484151 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.23e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy TrEMBL
Match: A0A0A0LN58 (Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G418350 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.23e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy TrEMBL
Match: A0A1S3C2M9 (Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103495965 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.23e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CsGy2G025950.2 vs. ExPASy TrEMBL
Match: A0A5A7V165 (Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00050 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 2.71e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 7   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 66

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 67  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 125

[Close]

BLAST of CsGy2G025950.2 vs. TAIR 10
Match: AT1G62040.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 217.2 bits (552), Expect = 7.0e-57
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFKLEHPLERRQ+ES+RIREKYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQ
Sbjct: 1   MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 118
           FVYVVRKRIKLS EKAIF+FVKN LPPTAAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CsGy2G025950.2 vs. TAIR 10
Match: AT1G62040.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 217.2 bits (552), Expect = 7.0e-57
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFKLEHPLERRQ+ES+RIREKYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQ
Sbjct: 15  MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 74

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 118
           FVYVVRKRIKLS EKAIF+FVKN LPPTAAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 75  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 131

[Close]

BLAST of CsGy2G025950.2 vs. TAIR 10
Match: AT2G05630.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFK EHPLE+RQ E+ARIREKYPDRIPVIVERAEKSDVP+ID+KKYLVPADLTVGQ
Sbjct: 1   MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 118
           FVYVVRKRIKLSPEKAIFIFVKNILPPTAA+MSAIYEE+KDEDGFLYM+YSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

[Close]

BLAST of CsGy2G025950.2 vs. TAIR 10
Match: AT4G21980.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-52
Identity = 100/118 (84.75%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFK+ +PLE R  ES+RIREKYPDRIPVIVE+A +SDVP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 119
           FVYVVRKRIKL  EKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct: 61  FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CsGy2G025950.2 vs. TAIR 10
Match: AT4G21980.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-52
Identity = 100/118 (84.75%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFK+ +PLE R  ES+RIREKYPDRIPVIVE+A +SDVP+IDKKKYLVPADLTVGQ
Sbjct: 16  MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 75

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 119
           FVYVVRKRIKL  EKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct: 76  FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 133

The following BLAST results are available for this feature:

BLAST of CsGy2G025950.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
M1C146	2.6e-56	92.37	Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV...	[more]
Q8S927	9.8e-56	92.31	Autophagy-related protein 8c OS=Arabidopsis thaliana OX=3702 GN=ATG8C PE=1 SV=1	[more]
Q2XPP5	2.9e-55	89.83	Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=...	[more]
Q69RC4	2.9e-55	89.83	Autophagy-related protein 8A OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8A P...	[more]
A2YS06	8.3e-55	90.60	Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=...	[more]

BLAST of CsGy2G025950.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151892.1	4.60e-77	100.00	autophagy-related protein 8C-like [Cucumis sativus] >XP_008455886.1 PREDICTED: a...	[more]
KAA0059575.1	5.60e-77	100.00	Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK24205.1 Ubiqui...	[more]
XP_023512507.1	2.66e-76	99.16	autophagy-related protein 8c [Cucurbita pepo subsp. pepo] >XP_023512508.1 autoph...	[more]
XP_022140546.1	8.93e-75	100.00	autophagy-related protein 8c [Momordica charantia]	[more]
XP_041008591.1	7.34e-74	94.96	autophagy-related protein 8C-like [Juglans microcarpa x Juglans regia]	[more]

BLAST of CsGy2G025950.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FV37	2.23e-77	100.00	Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111448369 PE=3 SV=...	[more]
A0A6J1JFZ0	2.23e-77	100.00	Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111484151 PE=3 SV=1	[more]
A0A0A0LN58	2.23e-77	100.00	Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G418350 PE=3 SV=1	[more]
A0A1S3C2M9	2.23e-77	100.00	Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103495965 PE=3 SV=1	[more]
A0A5A7V165	2.71e-77	100.00	Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CsGy2G025950.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62040.1	7.0e-57	92.31	Ubiquitin-like superfamily protein	[more]
AT1G62040.2	7.0e-57	92.31	Ubiquitin-like superfamily protein	[more]
AT2G05630.1	1.0e-55	91.45	Ubiquitin-like superfamily protein	[more]
AT4G21980.1	5.2e-52	84.75	Ubiquitin-like superfamily protein	[more]
AT4G21980.2	5.2e-52	84.75	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 14..117 e-value: 5.4E-52 score: 174.3
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 1..117
None	No IPR available	GENE3D	3.10.20.90		coord: 1..118 e-value: 1.9E-59 score: 201.0
None	No IPR available	PANTHER	PTHR10969:SF77	AUTOPHAGY-RELATED PROTEIN	coord: 1..117
None	No IPR available	CDD	cd16128	Ubl_ATG8	coord: 12..114 e-value: 6.05357E-71 score: 205.387
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 3..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G025950	CsGy2G025950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G025950.2.exon6	CsGy2G025950.2.exon6	exon
CsGy2G025950.2.exon5	CsGy2G025950.2.exon5	exon
CsGy2G025950.2.exon4	CsGy2G025950.2.exon4	exon
CsGy2G025950.2.exon3	CsGy2G025950.2.exon3	exon
CsGy2G025950.2.exon2	CsGy2G025950.2.exon2	exon
CsGy2G025950.2.exon1	CsGy2G025950.2.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G025950.2.utr3p1	CsGy2G025950.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy2G025950.2	cds.CsGy2G025950.2_5	CDS
cds.CsGy2G025950.2	cds.CsGy2G025950.2_4	CDS
cds.CsGy2G025950.2	cds.CsGy2G025950.2_3	CDS
cds.CsGy2G025950.2	cds.CsGy2G025950.2_2	CDS
cds.CsGy2G025950.2	cds.CsGy2G025950.2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G025950.2.utr5p2	CsGy2G025950.2.utr5p2	five_prime_UTR
CsGy2G025950.2.utr5p1	CsGy2G025950.2.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G025950.2	CsGy2G025950.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006995	cellular response to nitrogen starvation
cellular_component	GO:0016020	membrane
cellular_component	GO:0005874	microtubule