CsGy2G013075.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G013075.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transmembrane protein
Location	Gy14Chr2: 12862326 .. 12862616 (+)
Sequence length	291
RNA-Seq Expression	CsGy2G013075.1
Synteny	CsGy2G013075.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAA

mRNA sequence

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAA

Coding sequence (CDS)

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAA

Protein sequence

MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIILVLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW*

Homology

[Close]

BLAST of CsGy2G013075.1 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 208 bits (529), Expect = 6.98e-68
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96
          VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CsGy2G013075.1 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 7.87e-65
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96
          VLVRCL+SMDSSPRYYACPC+RGWKM+CRCG GSAW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of CsGy2G013075.1 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (474), Expect = 1.67e-59
Identity = 84/94 (89.36%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGS 94
          VLVRCL+++DSS RYYACPC+RGWKM CRCGRG+
Sbjct: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRGA 94

[Close]

BLAST of CsGy2G013075.1 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (401), Expect = 3.21e-48
Identity = 77/94 (81.91%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KP PSGPLPGPIL+LL VVFILI LSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGS 94
          VLVR L+S+DSS R+  C CDRGWKMHCRC  G+
Sbjct: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRHGA 92

[Close]

BLAST of CsGy2G013075.1 vs. NCBI nr
Match: PKI78722.1 (hypothetical protein CRG98_000947 [Punica granatum])

HSP 1 Score: 79.0 bits (193), Expect = 1.12e-16
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 3  YCYGCK-PRPS-GPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK P PS GP+P  +LL L +  I IALS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRCLASMDSSPRYYA-CPCDRGWKMHCRC 90
          L +V  L+S+D   ++Y   PC R WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

[Close]

BLAST of CsGy2G013075.1 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 3.38e-68
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96
          VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CsGy2G013075.1 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 3.81e-65
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96
          VLVRCL+SMDSSPRYYACPC+RGWKM+CRCG GSAW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of CsGy2G013075.1 vs. ExPASy TrEMBL
Match: A0A2I0LDH6 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.44e-17
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 3  YCYGCK-PRPS-GPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK P PS GP+P  +LL L +  I IALS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRCLASMDSSPRYYA-CPCDRGWKMHCRC 90
          L +V  L+S+D   ++Y   PC R WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

[Close]

BLAST of CsGy2G013075.1 vs. ExPASy TrEMBL
Match: A0A1R3JDI7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.57e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 3  YCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIIILV 62
          YC  C  RPS P+P  +LL LA+  +L+ALSSL   E + + +E  + W +L   + +LV
Sbjct: 10 YCGRCHRRPSSPMPYSVLLFLALALMLLALSSLIKFEIVLESAEDSMTWLVLLAVLALLV 69

Query: 63 LVRCLASMDSSPRYYACPCDR--GWK 85
          +VRCL+S DS  + + C C R   WK
Sbjct: 70 VVRCLSSTDSCRQPHYCGCGRCIKWK 95

[Close]

BLAST of CsGy2G013075.1 vs. ExPASy TrEMBL
Match: A0A6J1AFV4 (uncharacterized protein LOC110417586 OS=Herrania umbratica OX=108875 GN=LOC110417586 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.71e-11
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 3  YCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLLAVPIIILV 62
          YC  C+ RPS PLP  +LL LA+  +L+ALSSL   E  ++ +E  + W +L   + +LV
Sbjct: 10 YCGRCR-RPSSPLPYSVLLFLALALMLLALSSLIKFEIAMESAEDNMTWLVLLAALALLV 69

Query: 63 LVRCLASMDSSPRYYACPCDR--GWK 85
          LVR L+ MDS  R + C C R   WK
Sbjct: 70 LVRWLSPMDSCRRPHYCGCGRCTSWK 94

[Close]

BLAST of CsGy2G013075.1 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 4  CYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLL-AVPIIILV 63
          C  C+   S   P P+++++ V  +L+ALSS+   E  +   E  ++W LL AVP+ +L 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLASMDSSPR-YYACPCDRGWKMHC 89
           VRCL+ +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

[Close]

BLAST of CsGy2G013075.1 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 14 PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASMDS 72
          PLP P+LL+LAV  + +  S  F   E  + +E QIN+ LL +P+ ++VLVR L+SM++
Sbjct: 18 PLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

The following BLAST results are available for this feature:

BLAST of CsGy2G013075.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G013075.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61893.1	6.98e-68	100.00	hypothetical protein Csa_006600 [Cucumis sativus]	[more]
KAA0045689.1	7.87e-65	95.83	hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995...	[more]
KAG6571042.1	1.67e-59	89.36	hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605007.1	3.21e-48	81.91	hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PKI78722.1	1.12e-16	47.83	hypothetical protein CRG98_000947 [Punica granatum]	[more]

BLAST of CsGy2G013075.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB6	3.38e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1	[more]
A0A5D3BJW1	3.81e-65	95.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2I0LDH6	5.44e-17	47.83	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1	[more]
A0A1R3JDI7	1.57e-11	41.86	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1	[more]
A0A6J1AFV4	8.71e-11	44.19	uncharacterized protein LOC110417586 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of CsGy2G013075.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21185.1	1.4e-07	37.50	unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter...	[more]
AT2G21180.1	1.3e-05	44.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF32	SUBFAMILY NOT NAMED	coord: 1..96
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..96

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G013075	CsGy2G013075	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G013075.1.exon1	CsGy2G013075.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy2G013075.1	cds.CsGy2G013075.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G013075.1	CsGy2G013075.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane