CsGy1G004340.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G004340.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ribosomal protein L19
Location	Gy14Chr1: 2746800 .. 2748314 (+)
Sequence length	522
RNA-Seq Expression	CsGy1G004340.1
Synteny	CsGy1G004340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGTAAGCACTTCAACTTTATCTAGAATTGTTGCATCTTCTCTTTTCTTTCTCTTCGTGTTAACTTGAAGAGTCATGAAGTTTAGTTGTAAGTACATAACCACTTAAAGAGAACAGTGAGAAAATCAAAAGTAAGGCAGGTTTGATCAGTCATCATTTTGGTGTTTGATGTTGAATATTATTGATTTTAGAAAATTCTAAAAACATTTTAAAATTGCGTTTTCTGTTGAAGTGCTAGATGCATGTTTTGAAATATTTATTATAAACGTTTTCTTACATACATATCAATCATACATATAAAATTTTCATAATAAAAAAATTAGAGAAAAAGTATAGTTATCACAATTATTTAGTTAAATAAGTTCTCAGATAGAAACTTCCATTTGATACTATTTTTGTTTTCAAAAAATAAACCTATAGACAATACTTTCCATCTCTCTCTTTCTTCCTTTGTTATCTATAATAAATATTACCAAAATATCTTCCTTTGCGATCTATATTAAATATTACCAATTGTTTAAAAAACCAAGCCAAAACTTGAAACTAAAAAAAAAAGTAACTTTTTTCTTTTGAAACTTAGCTAGGAATTCAACCACACAAAGAGGATATAGGCTTAGTTTTGAAAAACAAAAACAAATAACGAAATAGTTACAAACTAGACCTTACTGATTCCATAATTCTAAACTCGTTTTTAAAACCAATCATAACTCAAGATCATATTTAAATATATAAAAATCACTTTTAGGGGCTTGAAACCAAACATTAATATGATTATATAAAAATCAATAATCTTTTTTCTAAAATCATATTTCAATCATCACTCCCAAAACATACCCTTAGATTGATTCCACTGGATGCAGATTTCACACAAGAGTGGGCAATTAAATCTTTAGTTTCAGAAAAGAATTTTGTACCCCTGATATTAACAATTCAAGTAGCAAAATCTTTTCTAAGAGAACAAGGATATTTTAACTAAAAAGCATATGTAACTATCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCAAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

mRNA sequence

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCAAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Coding sequence (CDS)

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCAAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Protein sequence

MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIYHQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL*

Homology

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BLAST of CsGy1G004340.1 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-58
Identity = 121/166 (72.89%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.9e-58
Identity = 119/166 (71.69%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-56
Identity = 115/166 (69.28%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+ AEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy Swiss-Prot
Match: Q90YU8 (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.9e-50
Identity = 102/169 (60.36%), Postives = 134/169 (79.29%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR +IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLL++YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+ A++A +K LS Q EA+R+   +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy Swiss-Prot
Match: Q6P5L3 (60S ribosomal protein L19 OS=Danio rerio OX=7955 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-49
Identity = 102/169 (60.36%), Postives = 132/169 (78.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR  IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLL++YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+ A+KA +K L+ Q EA+R    +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREA 169

[Close]

BLAST of CsGy1G004340.1 vs. NCBI nr
Match: KGN63882.1 (hypothetical protein Csa_013191 [Cucumis sativus])

HSP 1 Score: 321 bits (823), Expect = 3.13e-110
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV+AEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340.1 vs. NCBI nr
Match: XP_008453495.1 (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 315 bits (808), Expect = 6.06e-108
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340.1 vs. NCBI nr
Match: KAA0058145.1 (60S ribosomal protein L19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (803), Expect = 3.50e-107
Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTT SLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV AE+ALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340.1 vs. NCBI nr
Match: XP_038879968.1 (60S ribosomal protein L19-1-like [Benincasa hispida])

HSP 1 Score: 295 bits (755), Expect = 7.27e-100
Identity = 158/173 (91.33%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSR+R  AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYR+ EKID+HIY
Sbjct: 61  SRSRRRSDAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV AEKA EKTLSIQ+EAKRAINSKA +RL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL 173

[Close]

BLAST of CsGy1G004340.1 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275 bits (704), Expect = 1.24e-91
Identity = 147/171 (85.96%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET TISLANSRMSIRKLIKDGLIIKR+TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
            RSRQ H+AKSRGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLL+KYR+ EKID+HIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAII 171
           HQMY RVKGNVYKNKRVLME+IHKV +E A E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy TrEMBL
Match: A0A0A0LSW8 (Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 1.52e-110
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV+AEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy TrEMBL
Match: A0A1S3BVU0 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 2.93e-108
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy TrEMBL
Match: A0A5A7UX03 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004560 PE=3 SV=1)

HSP 1 Score: 313 bits (803), Expect = 1.70e-107
Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTT SLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 173
           HQMYIRVKGNVYKNKRVLMESIHKV AE+ALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy TrEMBL
Match: A0A6J1E0X8 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1)

HSP 1 Score: 274 bits (701), Expect = 1.72e-91
Identity = 146/171 (85.38%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKR+VWLDP+ET TISLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
            RSRQ H+AKSRGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLL+KYR+ EKID+HIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAII 171
           HQMY RVKGNVYKNKRVLME+IHKV +EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of CsGy1G004340.1 vs. ExPASy TrEMBL
Match: A0A6J1C1I4 (Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1)

HSP 1 Score: 272 bits (695), Expect = 6.88e-91
Identity = 143/168 (85.12%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAASSL CGKRRVWLDP+E TT+SLANSRMSIRKLIKDGLIIKRLT   SK
Sbjct: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           +RSRQ H+AK+RGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLL+KYR+ EKID+HIY
Sbjct: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSK 168
           HQMYIRVKGNVY+NKRVLME+IHKV AEKA E TL++Q+EAKRAINSK
Sbjct: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSK 168

[Close]

BLAST of CsGy1G004340.1 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 227.6 bits (579), Expect = 7.5e-60
Identity = 121/166 (72.89%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340.1 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 224.6 bits (571), Expect = 6.4e-59
Identity = 119/166 (71.69%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340.1 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.2e-58
Identity = 115/166 (69.28%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+ AEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of CsGy1G004340.1 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 54  LTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYE 113
           + + H  SRSR R +     RH+G GK   T EA         RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNK 60

Query: 114 KIDRHI-YHQMYIRVKGNVYKNKRVLMESIHKVNAEKAL---EKTLSIQVEAKRAINS 168
           KID+ + YH M+++VKG VYKNK VLMES+HK + E+     E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

The following BLAST results are available for this feature:

BLAST of CsGy1G004340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49693	1.1e-58	72.89	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
Q9SRX2	8.9e-58	71.69	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
Q9LUQ6	1.3e-56	69.28	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
Q90YU8	6.9e-50	60.36	60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1	[more]
Q6P5L3	1.2e-49	60.36	60S ribosomal protein L19 OS=Danio rerio OX=7955 GN=rpl19 PE=2 SV=1	[more]

BLAST of CsGy1G004340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63882.1	3.13e-110	98.84	hypothetical protein Csa_013191 [Cucumis sativus]	[more]
XP_008453495.1	6.06e-108	97.11	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
KAA0058145.1	3.50e-107	96.53	60S ribosomal protein L19-3-like [Cucumis melo var. makuwa]	[more]
XP_038879968.1	7.27e-100	91.33	60S ribosomal protein L19-1-like [Benincasa hispida]	[more]
XP_023515875.1	1.24e-91	85.96	60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G004340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8	1.52e-110	98.84	Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1	[more]
A0A1S3BVU0	2.93e-108	97.11	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
A0A5A7UX03	1.70e-107	96.53	Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A6J1E0X8	1.72e-91	85.38	Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1	[more]
A0A6J1C1I4	6.88e-91	85.12	Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1	[more]

BLAST of CsGy1G004340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02230.1	7.5e-60	72.89	Ribosomal protein L19e family protein	[more]
AT1G02780.1	6.4e-59	71.69	Ribosomal protein L19e family protein	[more]
AT3G16780.1	9.2e-58	69.28	Ribosomal protein L19e family protein	[more]
AT4G16030.1	2.1e-09	38.98	Ribosomal protein L19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 2.5E-80 score: 282.9
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..144 e-value: 1.3E-57 score: 193.8
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	1.10.1650.10		coord: 1..55 e-value: 3.2E-25 score: 89.8
None	No IPR available	GENE3D	1.10.1200.240		coord: 57..172 e-value: 1.5E-44 score: 153.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..87
None	No IPR available	PANTHER	PTHR10722:SF5	60S RIBOSOMAL PROTEIN L19-2	coord: 1..172
IPR039547	60S ribosomal protein L19	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..172
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR033935	Ribosomal protein L19, eukaryotic	CDD	cd01417	Ribosomal_L19e_E	coord: 4..166 e-value: 8.22212E-67 score: 199.499
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	48140	Ribosomal protein L19 (L19e)	coord: 3..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G004340	CsGy1G004340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G004340.1.exon1	CsGy1G004340.1.exon1	exon
CsGy1G004340.1.exon2	CsGy1G004340.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy1G004340.1	cds.CsGy1G004340.1	CDS
cds.CsGy1G004340.1	cds.CsGy1G004340.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G004340.1	CsGy1G004340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0042788	polysomal ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding