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Cp4.1LG18g06670.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAATAACATCATTACTTTGGGCCCAAGGAAAACACTACAATTTTCAAGCCTTTTTGTATGGTCAAACAAACAAAAGGAATATGGAAGACGAGAGGAAGGCATAATCCTTGCATCCCAAGTAACACATGACCGACCACCTAGCATTCCACTTCTATATTAGAGCTTTCAAATTTCATATAGAAATAAATCCACTAGTTTACCTCACGCTCTTCCAAGTTTAGCAGTGTTCTTTTTGGATTACCCATCAAGAAGAACCCTTTCAGTGCACAACAGAGAAGAAACCACCACAAGCAGCCCCAACAATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCAAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGTAAGTACAACAACTTTCCAAGAACTATCATCTGATTTTTTTCTTCCTGTTGAACTTGATCAGTCATGAAGTTTGCTTATGAGTGCACAACCATGTTTAAGAGAGGAGAGAAGAAAAGAAAAGGTTTGGCGAACATGACATATACAGATTTAACAAAAGAGTGAACAATGAATTCTTTTGTTTCAGGAAAGAATTTTGTACCTGATTATTAACAATTTATCAAAGATGCAAAAGAAAAACATTTTAACTAGAAAACACATGTAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTGATCATCAAGAGGATGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAATAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAAAACTGTTGATTAGAACATAAGTGCATAATTGTCCTTTTATTTTTGCAAGATCAGATGTATTTGTATATTTGTCACCAGTTCTATAT AATAAATAACATCATTACTTTGGGCCCAAGGAAAACACTACAATTTTCAAGCCTTTTTGTATGGTCAAACAAACAAAAGGAATATGGAAGACGAGAGGAAGGCATAATCCTTGCATCCCAAGTAACACATGACCGACCACCTAGCATTCCACTTCTATATTAGAGCTTTCAAATTTCATATAGAAATAAATCCACTAGTTTACCTCACGCTCTTCCAAGTTTAGCAGTGTTCTTTTTGGATTACCCATCAAGAAGAACCCTTTCAGTGCACAACAGAGAAGAAACCACCACAAGCAGCCCCAACAATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCAAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTGATCATCAAGAGGATGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAATAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAAAACTGTTGATTAGAACATAAGTGCATAATTGTCCTTTTATTTTTGCAAGATCAGATGTATTTGTATATTTGTCACCAGTTCTATAT ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCAAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTGATCATCAAGAGGATGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAATAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAA MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSKFRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYTAITGSGSDKIHTFRECLSYGVEAS Homology
BLAST of Cp4.1LG18g06670.1 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3) HSP 1 Score: 233.0 bits (593), Expect = 2.9e-60 Identity = 123/188 (65.43%), Postives = 151/188 (80.32%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 5.0e-60 Identity = 123/188 (65.43%), Postives = 150/188 (79.79%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 2.8e-58 Identity = 118/192 (61.46%), Postives = 150/192 (78.12%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy Swiss-Prot
Match: Q90YU8 (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 2.5e-51 Identity = 103/169 (60.95%), Postives = 136/169 (80.47%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy Swiss-Prot
Match: P0DJ60 (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL19 PE=1 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 3.3e-51 Identity = 107/167 (64.07%), Postives = 133/167 (79.64%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 390 bits (1003), Expect = 1.14e-136 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. NCBI nr
Match: KAG7023328.1 (60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 379 bits (973), Expect = 4.27e-132 Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata]) HSP 1 Score: 379 bits (973), Expect = 4.27e-132 Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima]) HSP 1 Score: 377 bits (968), Expect = 2.47e-131 Identity = 197/204 (96.57%), Postives = 199/204 (97.55%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. NCBI nr
Match: XP_038879968.1 (60S ribosomal protein L19-1-like [Benincasa hispida]) HSP 1 Score: 285 bits (730), Expect = 1.54e-95 Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy TrEMBL
Match: A0A6J1E0X8 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1) HSP 1 Score: 379 bits (973), Expect = 2.07e-132 Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy TrEMBL
Match: A0A6J1JJK9 (Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1) HSP 1 Score: 377 bits (968), Expect = 1.20e-131 Identity = 197/204 (96.57%), Postives = 199/204 (97.55%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy TrEMBL
Match: A0A1S3BVU0 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1) HSP 1 Score: 283 bits (724), Expect = 6.12e-95 Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy TrEMBL
Match: A0A6J1C1I4 (Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1) HSP 1 Score: 283 bits (723), Expect = 1.22e-94 Identity = 148/172 (86.05%), Postives = 158/172 (91.86%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. ExPASy TrEMBL
Match: A0A5A7UX03 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004560 PE=3 SV=1) HSP 1 Score: 281 bits (719), Expect = 3.53e-94 Identity = 150/171 (87.72%), Postives = 158/171 (92.40%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein ) HSP 1 Score: 233.0 bits (593), Expect = 2.1e-61 Identity = 123/188 (65.43%), Postives = 151/188 (80.32%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein ) HSP 1 Score: 232.3 bits (591), Expect = 3.6e-61 Identity = 123/188 (65.43%), Postives = 150/188 (79.79%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein ) HSP 1 Score: 226.5 bits (576), Expect = 2.0e-59 Identity = 118/192 (61.46%), Postives = 150/192 (78.12%), Query Frame = 0
BLAST of Cp4.1LG18g06670.1 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein ) HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10 Identity = 49/118 (41.53%), Postives = 71/118 (60.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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