Cp4.1LG13g07230.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g07230.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-CH-type domain-containing protein
Location	Cp4.1LG13: 8732164 .. 8734772 (+)
Sequence length	1510
RNA-Seq Expression	Cp4.1LG13g07230.1
Synteny	Cp4.1LG13g07230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGGTTGTGGTGGGGCTTGGATGGCAGGGCCCAAAAGCAGAAGAATATGGAGAAAAGGAAAAGAATGGGTTATGAATATGATGGTGATGGTGATGGTGATGCCTCTGCTTCTCACACTCTTTAGGCTTCTGCCTTCAGCATCTCAAGTTATGTATAAGTTTAAATCAATTAAGATTCAATGATGTTGATTGGACTAAAGTTGTTCCAAAATTGAACATACTCCCATTTCATACAAACTTTAATTAGGCGTATTAGTTTAATCCATACGAACGCCCTGAATTATGTAATGATGTCTTCGAAATATTTCTTCGTCTTTTTCCCCTCTGCAACTCTGCGACTGTTATAGCCTGCACGTCGCCACTGACACCCAACAAAGCAGCTGAAATAGGGACACCCACCGCAGTTGCTTCTACTTCTCACGCCATTACTGATTATCACAGCAAAATCCACCCTAAACCGAATTTCTACTCTTTTGCTTGATGGGAGTCTCTTTTGTTTGTGGGTATTCACGGTTCTGGCCTCACAGAGCCATTACATGAGGTTTCTCTTTCTGGGTCTTTGCGATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCACGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCGATGATGTGCGGAAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCACCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATGTAAGTTCCTCCAAATTGAATAACGCCTAATTTTTCTTAGGAATCTGTAGTAATCTTGATTTTTGCTTCTGCTTTGTGGAAATAGTGGCCGCCATTACAAATCCCATCAGCGTTTTCTTAGGATCCATGTTTTTGTTTCCTGCTAAAGAACAAAGCCAAAATGAAATGTGGTTCTTTGTCAAAACGAACAGAAGTTTGATTTTCCCTAGTAGATGCAAATGCTTTAGTCTGATGTAGTATTGATTAGAGCTCATTTCTTAGCTTTCTTTGAGGTTTTACTGATATTGACATCTCCACAAGTTCCGGCATAGCTATCAATTTCAACTTCATCTACTAGTTCAAAATGTATTAAACTAGATTCTCATTTCATTTCACCACTTATATGGTCAAAAGGGTTTGTTAGAAGTTAAGAACTATCTTCACTATATCTTCTGCATAAGTTGAAAATGAGCATATCTAAAGAATTGAATTATTATAGTTGGATCTGTCAAGAACTTTGATTGCTTTTGGCCCTGCTACCAAACCATGTGTAATTTGGCCAGGAATGTTTTTCATTACTTGTGTGAGATCCCACATCGATTGGAGAGGGGAACGAGTCATTTTTTATAAGGGTCTGAAAACCTCTCCCTTGTAGACGCGTTTTAAAAACCTTGAGAGAAGCCCGAAAGAGAAAGTCCAAAGAGAACAATATCTTCTAGCGATGGGTTTGACCTGTTACAAATGGAATCAGAGCTAGACACTAGGTGGTATGCCAGCGAGGATGCTGGGCCTTAAAAGGGGTGGATTATGAGATCCCACATCAATTGAAGCGGAGAATGAGTGCCAGCGTGGACGCTGACATCAAAGGGGGGTGGAATGTTAGGTCTCACATCAGTTGGAGAGAGGAATAAAGCATTCTCTATAAGAGTGTGGAAACCTCTCCCTATCCGTGATTCATGTTGTTCTGTTAGATATGAGAGTGGTGTTTGAAGTAATTTGGGAGATATGTTTTCTGGAAGAAGATGAGTGAAAAAGCAGATACTGTTCAAACTGGGAAGAACTAAATATGTACCTTGCATGTCTGCTTGGCTTGCACTTACCCATCTGCAATTTGTTACAGCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATGAACCTGATTCAACAGAGCAACGCAACGACTCAAACGACGCAACGACAGCAACCGCAGCAGCAGCAGCAGCTGTGGTAGTGCCATAGGTTCGGAACTTCTGGCAGGGCCATAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTTGCCTTTGTCATATCATGGCTGTTTCACTTCAAAATACCCTCATAGTGAAAAGCTTCAGCTATCTCTTCATTCTGCAACAGCTCGAAAGCTCCCTGAAATGGATGCATCTGTAAGTTTGTATATTGTTATTAAGGTTGTTGTGTATTTTCTTAAAATAGCATACTGAAGACAGACAGACAGGTTGGATTGTTGGATGATGAATTTCACAATCAGTTAATGTTCGAAAAGATGCCGGAACCACTCATCCTAGCTGGATAATTCCCTGTTTAGATTCCGACATGTAGTTCCTTCCTTACCAACAAAATCGGATTTCTGGTTTCAGCAGACAGACAAAAATTAATTTATGTCATAACAGAAACCT

mRNA sequence

TGTGGTTGTGGTGGGGCTTGGATGGCAGGGCCCAAAAGCAGAAGAATATGGAGAAAAGGAAAAGAATGGGTTATGAATATGATGGTGATGGTGATGGTGATGCCTCTGCTTCTCACACTCTTTAGGCTTCTGCCTTCAGCATCTCAAGTTATGTATAAGTTTAAATCAATTAAGATTCAATGATGTTGATTGGACTAAAGTTGTTCCAAAATTGAACATACTCCCATTTCATACAAACTTTAATTAGGCGTATTAGTTTAATCCATACGAACGCCCTGAATTATGTAATGATGTCTTCGAAATATTTCTTCGTCTTTTTCCCCTCTGCAACTCTGCGACTGTTATAGCCTGCACGTCGCCACTGACACCCAACAAAGCAGCTGAAATAGGGACACCCACCGCAGTTGCTTCTACTTCTCACGCCATTACTGATTATCACAGCAAAATCCACCCTAAACCGAATTTCTACTCTTTTGCTTGATGGGAGTCTCTTTTGTTTGTGGGTATTCACGGTTCTGGCCTCACAGAGCCATTACATGAGGTTTCTCTTTCTGGGTCTTTGCGATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCACGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCGATGATGTGCGGAAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCACCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATGAACCTGATTCAACAGAGCAACGCAACGACTCAAACGACGCAACGACAGCAACCGCAGCAGCAGCAGCAGCTGTGGTAGTGCCATAGGTTCGGAACTTCTGGCAGGGCCATAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTTGCCTTTGTCATATCATGGCTGTTTCACTTCAAAATACCCTCATAGTGAAAAGCTTCAGCTATCTCTTCATTCTGCAACAGCTCGAAAGCTCCCTGAAATGGATGCATCTGTAAGTTTGTATATTGTTATTAAGGTTGTTGTGTATTTTCTTAAAATAGCATACTGAAGACAGACAGACAGGTTGGATTGTTGGATGATGAATTTCACAATCAGTTAATGTTCGAAAAGATGCCGGAACCACTCATCCTAGCTGGATAATTCCCTGTTTAGATTCCGACATGTAGTTCCTTCCTTACCAACAAAATCGGATTTCTGGTTTCAGCAGACAGACAAAAATTAATTTATGTCATAACAGAAACCT

Coding sequence (CDS)

ATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCACGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCGATGATGTGCGGAAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCACCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATGAACCTGATTCAACAGAGCAACGCAACGACTCAAACGACGCAACGACAGCAACCGCAGCAGCAGCAGCAGCTGTGGTAGTGCCATAG

Protein sequence

MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP

Homology

[Close]

BLAST of Cp4.1LG13g07230.1 vs. NCBI nr
Match: XP_023550950.1 (uncharacterized protein LOC111808933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337 bits (865), Expect = 1.28e-116
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSEC 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSEC
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSEC 60

Query: 61  SVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCA 120
           SVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCA
Sbjct: 61  SVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCA 120

Query: 121 EAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           EAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP
Sbjct: 121 EAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174

[Close]

BLAST of Cp4.1LG13g07230.1 vs. NCBI nr
Match: KAG7015997.1 (hypothetical protein SDJN02_21101 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318 bits (816), Expect = 3.62e-108
Identity = 167/177 (94.35%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLAS+DVR+    SRAEIVGAAAEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECS+EMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVV 173
           KHCAEAWFKIKGDITCEICGSIAHNVTATY+PDSTEQRNDSNDATTATAAAAAA VV
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVV 177

[Close]

BLAST of Cp4.1LG13g07230.1 vs. NCBI nr
Match: XP_022938531.1 (uncharacterized protein LOC111444740 [Cucurbita moschata] >XP_022938532.1 uncharacterized protein LOC111444740 [Cucurbita moschata])

HSP 1 Score: 317 bits (811), Expect = 9.12e-108
Identity = 168/178 (94.38%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLAS+DVR+    SRAEIVGAAAEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIK+HLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAA  VVVP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAA--VVVP 176

[Close]

BLAST of Cp4.1LG13g07230.1 vs. NCBI nr
Match: KAG6578436.1 (hypothetical protein SDJN03_22884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313 bits (803), Expect = 1.92e-106
Identity = 167/183 (91.26%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           MTTTQNSHVVAMEVGEVEQPRRTS AGADALLAS+DVR+    SRAEIVGAAAE+RR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSGAGADALLASNDVRQCSGQSRAEIVGAAAEQRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECS+EMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAA-----V 174
           KHCAEAWFKIKGDITCEICGSIAHNVTATY+PDSTEQRNDSNDATTATAAAAAA     V
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAAAAAV 180

[Close]

BLAST of Cp4.1LG13g07230.1 vs. NCBI nr
Match: XP_022993070.1 (uncharacterized protein LOC111489196 [Cucurbita maxima] >XP_022993071.1 uncharacterized protein LOC111489196 [Cucurbita maxima])

HSP 1 Score: 307 bits (786), Expect = 5.87e-104
Identity = 163/178 (91.57%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           MTTTQNSHVVAMEVGEVEQP RTSAAGADALLASDDVR+    SRAEIVGAAAEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPSRTSAAGADALLASDDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
            SECSVEMDLECGL+EIKVHLTKM RDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  ASECSVEMDLECGLSEIKVHLTKMGRDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           KHCAEAWFKIKGDITCEICGSIAHNVT TYEPDSTEQRNDSND TTAT AAA  VVVP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTVTYEPDSTEQRNDSNDETTATTAAA--VVVP 176

[Close]

BLAST of Cp4.1LG13g07230.1 vs. ExPASy TrEMBL
Match: A0A6J1FEB0 (uncharacterized protein LOC111444740 OS=Cucurbita moschata OX=3662 GN=LOC111444740 PE=4 SV=1)

HSP 1 Score: 317 bits (811), Expect = 4.41e-108
Identity = 168/178 (94.38%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLAS+DVR+    SRAEIVGAAAEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIK+HLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAA  VVVP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAA--VVVP 176

[Close]

BLAST of Cp4.1LG13g07230.1 vs. ExPASy TrEMBL
Match: A0A6J1JXH7 (uncharacterized protein LOC111489196 OS=Cucurbita maxima OX=3661 GN=LOC111489196 PE=4 SV=1)

HSP 1 Score: 307 bits (786), Expect = 2.84e-104
Identity = 163/178 (91.57%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           MTTTQNSHVVAMEVGEVEQP RTSAAGADALLASDDVR+    SRAEIVGAAAEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPSRTSAAGADALLASDDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
            SECSVEMDLECGL+EIKVHLTKM RDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH
Sbjct: 61  ASECSVEMDLECGLSEIKVHLTKMGRDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           KHCAEAWFKIKGDITCEICGSIAHNVT TYEPDSTEQRNDSND TTAT AAA  VVVP
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTVTYEPDSTEQRNDSNDETTATTAAA--VVVP 176

[Close]

BLAST of Cp4.1LG13g07230.1 vs. ExPASy TrEMBL
Match: A0A6J1JQX9 (uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 2.37e-89
Identity = 143/178 (80.34%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAAEKRRGSS 60
           M+T QN+HVVAME  + E+P R S AG DA  ASDDVR+    S AEIVGAA EKRRGSS
Sbjct: 1   MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIVGAAVEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGL EIKVHL KMERDCRICHLSLDA+N ESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           KHCAEAWFK+KGDITCEICGSIAHNVT+T E DSTEQ N+SND TTAT AAA  VVVP
Sbjct: 121 KHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAA--VVVP 176

[Close]

BLAST of Cp4.1LG13g07230.1 vs. ExPASy TrEMBL
Match: A0A6J1GZN3 (uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC111458938 PE=4 SV=1)

HSP 1 Score: 259 bits (663), Expect = 1.56e-85
Identity = 141/179 (78.77%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRK----SRAEIVGAAA-EKRRGS 60
           M+T +++HVVAME  + E+P R S AG  A  ASDDVR+    S AEIVGAAA EKRRGS
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVEKRRGS 60

Query: 61  SVSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAA 120
           SVSECSVEMDLECGL EIKVHL KMERDCRICHLSLDA+N ESGIPIELGCSCKDDLAAA
Sbjct: 61  SVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAA 120

Query: 121 HKHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           HKHCAEAWFK+KGDITCEICGSIAHNVT+T E DSTEQ N+SND TTAT AAA  VVVP
Sbjct: 121 HKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAA--VVVP 177

[Close]

BLAST of Cp4.1LG13g07230.1 vs. ExPASy TrEMBL
Match: A0A6J1BZQ7 (uncharacterized protein LOC111006186 OS=Momordica charantia OX=3673 GN=LOC111006186 PE=4 SV=1)

HSP 1 Score: 250 bits (638), Expect = 6.23e-82
Identity = 138/174 (79.31%), Postives = 144/174 (82.76%), Query Frame = 0


Query: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSEC 60
           MTT  NSHV+A+E  E E PRR S  GAD        R+  AEI    AEKRRGSSVSEC
Sbjct: 1   MTTIDNSHVIAVEEEE-EGPRRASTTGADV-----SPRRRGAEIE---AEKRRGSSVSEC 60

Query: 61  SVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCA 120
           SVEMDLECGLAEIKVHL K+ERDCRICHLSLD+SN ESGIPIELGCSCKDDLAAAHKHCA
Sbjct: 61  SVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCA 120

Query: 121 EAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
           EAWFKIKGDITCEICGSIAHNVT+T E DSTEQRNDS DATTATAAAA  VVVP
Sbjct: 121 EAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAA--VVVP 163

[Close]

BLAST of Cp4.1LG13g07230.1 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-38
Identity = 84/146 (57.53%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 19  QPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSECSVEMDLECGLAEIKVHLT 78
           +PRR+S A          V K   EIV    ++ R S+ S CSVE+DLE GL E  VHL+
Sbjct: 28  EPRRSSGA----------VEKEE-EIV---KDEERRSNASVCSVEIDLELGLPEKVVHLS 87

Query: 79  KMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSI 138
           + ERDCRICH+SLDA+N ESG+PIELGCSCK DLAAAHKHCAE WFKIKG+  CE+CGSI
Sbjct: 88  QSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSI 147

Query: 139 AHNVTATYEPDSTEQRNDSNDATTAT 165
           A NV  + E +S E RN++N     T
Sbjct: 148 AGNVVGSVEVESEESRNEANGVENLT 159

[Close]

BLAST of Cp4.1LG13g07230.1 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 81  ERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 140
           E+DCRICHL L++S  E G P+ LGCSCKDDL   HK CA+ WFKIKG+ TCEIC SIA 
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQ 134

Query: 141 N 142
           N
Sbjct: 135 N 135

[Close]

BLAST of Cp4.1LG13g07230.1 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 52/95 (54.74%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 81  ERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 140
           E+DCRICHL ++ S    G  IELGCSCKDDLA AH+ CAE WFKIKGD TCEIC S+A 
Sbjct: 81  EKDCRICHLGVETS---GGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 141 NVTATYE--PDSTEQRNDSNDATTATAAAAAAVVV 174
           NV    E    + E+R   N   TA      A VV
Sbjct: 141 NVGGANEMVGSTMEERELRNGEETAAGEGGGATVV 172

[Close]

BLAST of Cp4.1LG13g07230.1 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-17
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 81  ERDCRICHLSLDASNQESGIP-------IELGCSCKDDLAAAHKHCAEAWFKIKGDITCE 140
           ER CRICH   D S + SG         IE+GC CK++L  AH HCAEAWFK++G+  CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 141 ICGSIAHNVTATYEPDSTEQRNDSND 160
           ICG  A NVT     D + +R+++ D
Sbjct: 159 ICGCTAKNVTVRLMEDWSGERDNTLD 184

[Close]

BLAST of Cp4.1LG13g07230.1 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 6.0e-17
Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 82  RDCRICHLSLDASNQES-------------------------------GIPIELGCSCKD 141
           RDCRICHL L+ + +                                 G+P++LGCSCK 
Sbjct: 79  RDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKG 138

Query: 142 DLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAA 169
           DL  AH  CAE WFKIKG++TCEICG++A NV         EQ N  + A+T + AAA
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG-------EQSNPESTASTHSQAAA 189

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g07230.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g07230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550950.1	1.28e-116	100.00	uncharacterized protein LOC111808933 [Cucurbita pepo subsp. pepo]	[more]
KAG7015997.1	3.62e-108	94.35	hypothetical protein SDJN02_21101 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022938531.1	9.12e-108	94.38	uncharacterized protein LOC111444740 [Cucurbita moschata] >XP_022938532.1 unchar...	[more]
KAG6578436.1	1.92e-106	91.26	hypothetical protein SDJN03_22884, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993070.1	5.87e-104	91.57	uncharacterized protein LOC111489196 [Cucurbita maxima] >XP_022993071.1 uncharac...	[more]

BLAST of Cp4.1LG13g07230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEB0	4.41e-108	94.38	uncharacterized protein LOC111444740 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A6J1JXH7	2.84e-104	91.57	uncharacterized protein LOC111489196 OS=Cucurbita maxima OX=3661 GN=LOC111489196...	[more]
A0A6J1JQX9	2.37e-89	80.34	uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535...	[more]
A0A6J1GZN3	1.56e-85	78.77	uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A6J1BZQ7	6.23e-82	79.31	uncharacterized protein LOC111006186 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Cp4.1LG13g07230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	2.1e-38	57.53	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.5e-20	67.21	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.0e-20	54.74	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	3.5e-17	47.67	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	6.0e-17	39.83	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 83..136 e-value: 8.2E-18 score: 75.2
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 84..135 e-value: 3.7E-9 score: 36.6
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 76..142 score: 16.897436
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..146 e-value: 2.9E-14 score: 54.4
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 18..167
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 18..167
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 84..136 e-value: 1.5247E-10 score: 52.3296
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 81..138

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG13g07230	Cp4.1LG13g07230	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07230.1:five_prime_utr:001	Cp4.1LG13g07230.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07230.1:exon:001	Cp4.1LG13g07230.1:exon:001	exon
Cp4.1LG13g07230.1:exon:002	Cp4.1LG13g07230.1:exon:002	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07230.1:cds:002	Cp4.1LG13g07230.1:cds:002	CDS
Cp4.1LG13g07230.1:cds:001	Cp4.1LG13g07230.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07230.1:three_prime_utr:001	Cp4.1LG13g07230.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07230.1	Cp4.1LG13g07230.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding