Cp4.1LG11g08240.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g08240.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transmembrane protein 208 homolog
Location	Cp4.1LG11: 6699394 .. 6699958 (+)
Sequence length	201
RNA-Seq Expression	Cp4.1LG11g08240.1
Synteny	Cp4.1LG11g08240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGGTAAGGTCCAAATACTTTTGAAATTGAACTTGGACATATTTAGTGTAATATATAGCCTAGGAACAACCCTGATATTTGGGTGTGAAATAATGTCATTGATATATCTTTCTGAAATGACTTTAATTGTACATCTAAACATTATTTTCATTATTACCTATATTAACAAATGTTCATGCATCTGCTAGAAAGTTCAAAATACTTCGTCGGGCGACCAACAAGTTAAAATAGGCACATCTAACTCTGTTTGATGTTCATTTTTCTGTTGCTCTGCAGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGTAATCTATCCTCACCAAACAAGATTTCCTGTATTTTAAAAACGGCCCGGTCTTCTCTTTTCATTTAGGCGTGTACTCGTGTGTCGTTTAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA

mRNA sequence

ATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA

Coding sequence (CDS)

ATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA

Protein sequence

MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKFMKTKNR

Homology

[Close]

BLAST of Cp4.1LG11g08240.1 vs. NCBI nr
Match: XP_023547345.1 (transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (311), Expect = 2.74e-35
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
          MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 23 MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 82

Query: 61 MKTKNR 66
          MKTKNR
Sbjct: 83 MKTKNR 88

[Close]

BLAST of Cp4.1LG11g08240.1 vs. NCBI nr
Match: XP_023521195.1 (transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (311), Expect = 3.32e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           MKTKNR
Sbjct: 168 MKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. NCBI nr
Match: XP_022946520.1 (transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmembrane protein 208 homolog [Cucurbita maxima] >KAG6599131.1 Transmembrane protein 208, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030072.1 Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (311), Expect = 3.32e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           MKTKNR
Sbjct: 168 MKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. NCBI nr
Match: KAA0043099.1 (transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 transmembrane protein 208-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 3.67e-32
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLI+ LLS GSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 41  MSILSGKFWYTYLVIPAFGVYKSSGLIRGLLSQGSEDEPEDEKTRKKREKMEKKASRVKF 100

Query: 61  MKTKNR 66
           +KTKNR
Sbjct: 101 VKTKNR 106

[Close]

BLAST of Cp4.1LG11g08240.1 vs. NCBI nr
Match: XP_023536815.1 (transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118 bits (295), Expect = 8.84e-32
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIK LLS GSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKGLLSQGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           +KTKNR
Sbjct: 168 VKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. ExPASy TrEMBL
Match: A0A6J1KBQ8 (transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.61e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           MKTKNR
Sbjct: 168 MKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. ExPASy TrEMBL
Match: A0A6J1G433 (transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.61e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           MKTKNR
Sbjct: 168 MKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. ExPASy TrEMBL
Match: A0A5D3BBK4 (Transmembrane protein 208-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00150 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.78e-32
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLI+ LLS GSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 41  MSILSGKFWYTYLVIPAFGVYKSSGLIRGLLSQGSEDEPEDEKTRKKREKMEKKASRVKF 100

Query: 61  MKTKNR 66
           +KTKNR
Sbjct: 101 VKTKNR 106

[Close]

BLAST of Cp4.1LG11g08240.1 vs. ExPASy TrEMBL
Match: A0A6J1I0K5 (transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468625 PE=3 SV=1)

HSP 1 Score: 118 bits (295), Expect = 4.28e-32
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIK LLS GSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKGLLSQGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           +KTKNR
Sbjct: 168 VKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. ExPASy TrEMBL
Match: A0A6J1FB96 (transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443871 PE=3 SV=1)

HSP 1 Score: 118 bits (295), Expect = 4.28e-32
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKF 60
           MSILSGKFWYTYLVIPAFGVYKSSGLIK LLS GSEDEPEDEKTRKKREKMEKKASRVKF
Sbjct: 108 MSILSGKFWYTYLVIPAFGVYKSSGLIKGLLSQGSEDEPEDEKTRKKREKMEKKASRVKF 167

Query: 61  MKTKNR 66
           +KTKNR
Sbjct: 168 VKTKNR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. TAIR 10
Match: AT4G30500.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-20
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 2   SILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKFM 61
           SI+SGKFWY YLVIPAFG YK+SGLIK LLSHGSE   EDEKTRKKREKME+KASR + +
Sbjct: 109 SIISGKFWYAYLVIPAFGAYKASGLIKGLLSHGSEGGVEDEKTRKKREKMERKASRGQVV 168

Query: 62  KTKNR 67
           KT++R
Sbjct: 169 KTRSR 173

[Close]

BLAST of Cp4.1LG11g08240.1 vs. TAIR 10
Match: AT2G23940.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-18
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 2   SILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKFM 61
           SI++GKFWYTYLVIPAFGVYK+SGLI+  +S GSE   EDEK+RKKREKME+KASR + +
Sbjct: 109 SIITGKFWYTYLVIPAFGVYKASGLIRGFMSQGSEGGVEDEKSRKKREKMERKASRGQVV 168

Query: 62  KTKNR 67
           KT+ R
Sbjct: 169 KTRTR 173

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08240.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g08240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547345.1	2.74e-35	100.00	transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_023521195.1	3.32e-34	100.00	transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022946520.1	3.32e-34	100.00	transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmemb...	[more]
KAA0043099.1	3.67e-32	93.94	transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 tr...	[more]
XP_023536815.1	8.84e-32	95.45	transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG11g08240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBQ8	1.61e-34	100.00	transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE...	[more]
A0A6J1G433	1.61e-34	100.00	transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 ...	[more]
A0A5D3BBK4	1.78e-32	93.94	Transmembrane protein 208-like protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1I0K5	4.28e-32	95.45	transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468625 PE...	[more]
A0A6J1FB96	4.28e-32	95.45	transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443871 ...	[more]

BLAST of Cp4.1LG11g08240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30500.1	2.9e-20	76.92	Protein of unknown function (DUF788)	[more]
AT2G23940.1	2.1e-18	70.77	Protein of unknown function (DUF788)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	TMEM208_SND2	coord: 1..55 e-value: 3.3E-13 score: 49.8
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	TRANSMEMBRANE PROTEIN 208	coord: 2..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..66
None	No IPR available	PANTHER	PTHR13505:SF8	BNAA01G06570D PROTEIN	coord: 2..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g08240	Cp4.1LG11g08240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g08240.1:exon:001	Cp4.1LG11g08240.1:exon:001	exon
Cp4.1LG11g08240.1:exon:002	Cp4.1LG11g08240.1:exon:002	exon
Cp4.1LG11g08240.1:exon:003	Cp4.1LG11g08240.1:exon:003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g08240.1:cds:001	Cp4.1LG11g08240.1:cds:001	CDS
Cp4.1LG11g08240.1:cds:002	Cp4.1LG11g08240.1:cds:002	CDS
Cp4.1LG11g08240.1:cds:003	Cp4.1LG11g08240.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g08240.1	Cp4.1LG11g08240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006624	vacuolar protein processing
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005773	vacuole