Cp4.1LG11g07200.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g07200.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Cp4.1LG11: 5108862 .. 5109125 (-)
Sequence length	264
RNA-Seq Expression	Cp4.1LG11g07200.1
Synteny	Cp4.1LG11g07200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCAGTATACACAGAGTACTTGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

mRNA sequence

ATGGTTTTCAGTATACACAGAGTACTTGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Coding sequence (CDS)

ATGGTTTTCAGTATACACAGAGTACTTGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Protein sequence

MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS

Homology

[Close]

BLAST of Cp4.1LG11g07200.1 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (399), Expect = 2.40e-48
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVLVVLLMCVVALLAVQPDQACA+RSIDLALRSSRHILVEDSRVEEKNMKRNSL
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          PRNSKFDPNQSSKRRVRRGSDPIHNKS
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of Cp4.1LG11g07200.1 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (395), Expect = 9.79e-48
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLA RSSRHILVEDSRVEEKNMKRNSL
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          PRNSKFDPNQSSKRRVRRGSDPIHNKS
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of Cp4.1LG11g07200.1 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 3.45e-41
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVL+VLLMCV ALLAV+P+QACALRSIDLALR SRHILVEDSRVEE NMKRNSL
Sbjct: 1  MVFSIHRVLIVLLMCV-ALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          P+N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of Cp4.1LG11g07200.1 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 1.02e-40
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 3  FSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSLPR 62
          FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLALR SRHILVEDS VEE NMKRNS PR
Sbjct: 3  FSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPR 62

Query: 63 NSKFDPNQSSKRRVRRGSDPIHNKS 87
          N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 63 NNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of Cp4.1LG11g07200.1 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106 bits (264), Expect = 7.38e-28
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVL+VLLMCVVALLAV+P+QAC L S+DLALR  RH+L ED R       RNS 
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-EDPRD------RNSR 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          PRN KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRN-KFDPNRSSKRRVRRGSDPIHNRS 79

[Close]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.67e-41
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVL+VLLMCV ALLAV+P+QACALRSIDLALR SRHILVEDSRVEE NMKRNSL
Sbjct: 1  MVFSIHRVLIVLLMCV-ALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          P+N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 4.93e-41
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 3  FSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSLPR 62
          FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLALR SRHILVEDS VEE NMKRNS PR
Sbjct: 3  FSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPR 62

Query: 63 NSKFDPNQSSKRRVRRGSDPIHNKS 87
          N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 63 NNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL
Match: A5APJ5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.94e-17
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   LRSIDL LR S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLIC--IGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          + N + N+ P N KFD NQSSKRRVRRGSDPIHN+S
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL
Match: A0A067GTG0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.80e-16
Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRH---ILVEDSRVEEK---- 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL LR ++H   ++ ++ R+ ++    
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 --NMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 87
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL
Match: V4VH78 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.80e-16
Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRH---ILVEDSRVEEK---- 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL LR ++H   ++ ++ R+ ++    
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 --NMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 87
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07200.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029950.1	2.40e-48	98.85	hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598982.1	9.79e-48	98.85	hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0032271.1	3.45e-41	88.51	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA...	[more]
KGN61380.1	1.02e-40	88.24	hypothetical protein Csa_006322 [Cucumis sativus]	[more]
KAG7036811.1	7.38e-28	74.71	hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRV2	1.67e-41	88.51	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LHH0	4.93e-41	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
A5APJ5	6.94e-17	54.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1	[more]
A0A067GTG0	5.80e-16	51.04	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1	[more]
V4VH78	5.80e-16	51.04	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ...	[more]

BLAST of Cp4.1LG11g07200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g07200	Cp4.1LG11g07200	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07200.1:exon:001	Cp4.1LG11g07200.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07200.1:cds:001	Cp4.1LG11g07200.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07200.1	Cp4.1LG11g07200.1-protein	polypeptide