Cp4.1LG11g02560.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g02560.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG11: 1314374 .. 1318646 (-)
Sequence length	417
RNA-Seq Expression	Cp4.1LG11g02560.1
Synteny	Cp4.1LG11g02560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTTTTGATTAATATAATCCTAAAGTTGGTGGAAATGATAATTGAAAATGTGACATGTTTGGTTTGATTGATGTTTTTAATGAAACACTGTTGAAAGTAAGGTCAGTTGTTGCAGCTTGAGAGCTACTGATGCTTACTCCCAAACTTTTCAAACCTTCGTTTTTTAAGCAAAATCATGTCTCGTGGTCCCACTTCCTTAGTGTGTCGGGAAAAACTTTTGGAATTTAATCTAATAAACTTGTTCAAGAATAAAACCTTTAAATTAAATTATCTATAAAAAAAATCCAGAGTAAATAAAATTCATTCTATAATTCAAACTACTTTATAAAATAATTGATCAAGACTACTTGAATGACTCTGACCTGCAAATCTAACCTAAGATTAATGGGAAGATTGTAACTTTCTGGACCATCAATATGATAATGGCCACCAGCTAATTGTAATTTATAATCGTAAAAATAATTCTCTTAAATTTAAAAGTAAAATCTATATATAACATTTTTATTGCCTTAAAAATTATTTTCTTACTTTTTATATTTAACTAATTACCGATTTAAGCATAGTTTGATGTAGCTATTCATGACCCGTTTCCTTTGCAAAGGCCCAAATTAATGAACTTAGTTAGGCCCATTAGATTGATAAGCCCAAGACATTGGGCCCGGGAAAAAAAAGGCAAGCTCTAACGTTGAGTCATGCATGTGACATAGAGTGATTACGTGTTATAGCATAATTCGTCTGTGATACAACTTCCATCACCGACCCAACGTTTTTACACCTAGATCGATCATGCCGAAGGATTTTCATCTGCAAATCAGAGCCGTCCAAATTTCGAGCCAAATTCCAATTTTCTGCCTAAAACTACTGGCTCGAACGGTTATAAAGCCTGCGATCTGTTCGTACCTCTTCATAATCCAAAAACCCTAATTCCGTAGTACATAGCCGTCTTTCCAGCTTCCAAAGCCGCTTAAATTTTCTTTCAGTTCGTCTGGTTTTCAATTCGTTCTTTACTCTTTCATGTCGATGTTGAGATCTTTTAGGGCAAATTACTGCGTTCTCGAACAGAGTTCGAAACTTTTTTCTTACGATTTCTGCAATTGGCATTGAGTTCGGATTTGGAAGAGGCCATGTGACGAACTTTCGAATGGTAGAATGCTTTTGTCTACGAACTTGTAGCATTATGATTAACCAATTTGTATAGGAAGATCTGATGCCTCTCCTTATCAATTTCTTCTTGTTTTCTTTCCTATCGATCTATTTGATTCATTTTTGTTTTTCAATCTCATGGATTATAACTCGCAGTATGTTTTCCGAGGGTTCTGGTGACATTTTCTTCTTCTGGATGATGAGAAAACATGAAATTACAGTTATCCCTGGCTGATTCGAAGTGCTGATATTTCTTATACTCTGACAGTACTGATTTTTTCATCGACTTTTTCGTTTTTTTTTTTTCTTACTTTCTTGATCTCTCTATTTGCTCTTAGGTGTGGCCAGTGATGATGAGTTTTTTTTGGTTCACTGAGATGCAAAAATGTTGCATTGGTGTTGAAGCTTTTTTGAACTAGGACGGTCTGAGGCTACCACCTTTCTGCTTTGCCATTGTTTATATGCTATGAAGCTTAATATCTGTTTTTCATCAAATCTTCTTTTTTTGTGTGTGTGGGAATTGTCTTTTTCATTGCATATGGGAATGGATGATTTTCATGGGTTATGGAGAATTTTGAATAAATTTGGGTTCTTAATTCTAGTTGAAATTATGTGGGTGATGAAACCATTATATATCAGTTATCCCTGTCTGATGCTTTGGTGCTGATGATTAATGATCTGACACACACTTGGATTGATTCCCAATGGTTCAACATCTTTCGAGTGTTTCAAAATTGCCTTAGAACCCATAATACATTAGAATGTTGGTTTAAATATTTAAGATATGAAATGAAGAACTAGTGATTTTTATGACAATCTGCTTGGCTATTAGAAATGGATTGCTTGAGTTTACCCGTGATATTGATATATACACATATGACCCTTGCCAATTAAATCATTGGCCTCAAAAACTTCTGTTTGTGCAATAACCTAAAGAGTTTGTAAGATAATTGAATCCTGATGGATTTGAATCTGCATAAACGACAATTGCATATTTAAAGGTTGATGCAGATGGTGGACTACAAAATCATGACGGCCATAATATAATATCTAAGGACAGCCCTGAGCATAATACTAAATACCTTTACAGTTATTTGAAGCAAGTAGGATCTTGCTAAGGCTTTACAGAGATAACTACTAAAAGAACGCCACGAGAAACAAGAGGAAAATAAAAAGGTTGCCATGGCTTGGAAGCACTTGCCACTGTCTTTTCTCTTGAACAAACTTGGTGAATGCGAGAGAAGCTCAGAACTTTAGGCTGAAGGCAGAGATAGCTACTAACTCCTTACATTTTTGGATGTTATTCCATCCTTTATTCTTATGCTGAAAGTGGGAGAAACTTTGTCACAACCTAACGTTAAAGAGTGTAGGTTATGATCCTCACGTTGCGACAAGAGCAGCGGTGCCCTTATGGCTGGTCGTAGGCGTGTCAAGTTCACAACTCTGCATGCTTGAAAAAGTATGATCGAAACCCCTAACTAGTTTGGCAATTACCTCCATTTTTCTACTCTTTGTGGCCTACTCCATAATTAAGCTCGTCACTACTTTATGGTGATGTAACGGTTTGTTCCATGCTTTGCCCAGTTATTCTTAAGATCAACTGGAGCTGAAAGATCGTGGCCTTCAGCTGCGAGGCGGTTAAGCAACTTGTTAAAGGCGCTTCCGCTCATCTTGCGACCACCAAGTCGTGCATGTCGTTTATTGGGAACTGCTGGTAATGGATACATTGAGATGGTGGTAGTACAACATGCAGACTGCCATCCACCATTTCCCCATTTGTAGCACTGTCTTATAACTCCTGTGCAGGAGCATATTGGTGCTGGCATGGTAGATTCATCAAAGGCTACCTGATTCAATCCCAGATCTTGGCCTTTCCAATCTGACTGTTTGTGATCATTACCAATTCCATGAGCCTTGCCCACCATTACCTTATTCAAGTCTTCACCCTCTCTTTTGACCTTCCTTGGAGCTTTTGAAACCTTCTTGTTCGGAGTTGTAACGGTCTTTCCCTCCTGTGTTCGCTTCTTTCGTCGTGTCTTCGTCAATTCAGAAGCAACTGGGGATACCGGGGAAGCTTCATTTGGATGCATTTCTCTCGAATTGTAATTACTTTCATTCATATGGGGCATATGAACTGTGTGCTGCTGTGGGTGATGTATATGCTTCACTCCTCTAGCGATTTGGCATCCTGGTGGACATGATAAACTGTTATTTGGTAGGGAGTTATCACGATACTGAAGAGTTGCAATGGCATTGTCTCTTTCCAATAGGGCGTTGTTCCTCTCTGCAATTGCAGCATCTCGCTGTAGAAAAGCCATGTCTCGCTCTGCTAATGCAGCCTTTTTCTCTGAAAGGGCTAAATTCCTCTCTTGAATGGCTGCATCTCTTTCAGCCATAATCGTCATTATCTGCTTCATTGATGGCTGATGCTGCATCATCCACTGCCAACACAAATTCAAACCAAATTCATCAAACCTGAAAGACTTTTATTCATCCATTAACCTTTTATTCATCCAAATCTTGATACCTGGCCCTGAGCTGACTTATAGTGATCTGTTTTGTGCCTTCCATTCTCTCGATGTCCACCATCGTCCATTTCTGACTCCAAACTAGTAACCAACACATAAACAGTAACAAAGATCTTCCACTTAGCCAAATTCCCATATTGTTGAATCTCAAAAGAAGTGCATTGATTCAGCTTTAAGATTCCTATTACGTTCCCATTTTACTTGAAAAAATATGAACACAACAGCAGATATTTCCTAAACTTCTGGAGTGAAATTGAAGCAATAGATATGAGCAGCATGAGCCATTCACAGTTTAAGCAAAAAGAAGATGAATAGAAGACTAAAGATAGTTCAGAGTAGTAGATGATACTTCACCTGTAATCAGAAGACCAAACAAGAATTCACTTGGGAAATGAAATCTACGTTAGAAGTTTTGATCCCCAGTCAGCTTCCTCATCTCGTCCTCCAGATCATCTGGACAATGCAATCCAATGTTTCAGAACTCAAATGATACTACAAAAACGATCGAGTCAAAGTGGCTGCAAAAAGCATCTTCATCGAATTCAACGGGTTCAATGAGCTCAAATCAGCTGGAAAACAAGGCAAAAAAAGGCTAA

mRNA sequence

ATGAAAGGGCAAATTACTGCGTTCTCGAACAGAGTTCGAAACTTTTTTCTTACGATTTCTGCAATTGGCATTGAGTTCGGATTTGGAAGAGGCCATGTGACGAACTTTCGAATGTTATTCTTAAGATCAACTGGAGCTGAAAGATCGTGGCCTTCAGCTGCGAGGCGGTTAAGCAACTTGTTAAAGGCGCTTCCGCTCATCTTGCGACCACCAAGTCGTGCATGTCGTTTATTGGGAACTGCTGTCAGCTTCCTCATCTCGTCCTCCAGATCATCTGGACAATGCAATCCAATGTTTCAGAACTCAAATGATACTACAAAAACGATCGAGTCAAAGTGGCTGCAAAAAGCATCTTCATCGAATTCAACGGGTTCAATGAGCTCAAATCAGCTGGAAAACAAGGCAAAAAAAGGCTAA

Coding sequence (CDS)

ATGAAAGGGCAAATTACTGCGTTCTCGAACAGAGTTCGAAACTTTTTTCTTACGATTTCTGCAATTGGCATTGAGTTCGGATTTGGAAGAGGCCATGTGACGAACTTTCGAATGTTATTCTTAAGATCAACTGGAGCTGAAAGATCGTGGCCTTCAGCTGCGAGGCGGTTAAGCAACTTGTTAAAGGCGCTTCCGCTCATCTTGCGACCACCAAGTCGTGCATGTCGTTTATTGGGAACTGCTGTCAGCTTCCTCATCTCGTCCTCCAGATCATCTGGACAATGCAATCCAATGTTTCAGAACTCAAATGATACTACAAAAACGATCGAGTCAAAGTGGCTGCAAAAAGCATCTTCATCGAATTCAACGGGTTCAATGAGCTCAAATCAGCTGGAAAACAAGGCAAAAAAAGGCTAA

Protein sequence

MKGQITAFSNRVRNFFLTISAIGIEFGFGRGHVTNFRMLFLRSTGAERSWPSAARRLSNLLKALPLILRPPSRACRLLGTAVSFLISSSRSSGQCNPMFQNSNDTTKTIESKWLQKASSSNSTGSMSSNQLENKAKKG

Homology

[Close]

BLAST of Cp4.1LG11g02560.1 vs. ExPASy TrEMBL
Match: A0A0A9UV68 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.38e-08
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 41 LRSTGAERSWPSAARRLSNLLKALPLILRPPSRACRLLG 79
          LRSTG ERSWPSAARRLS+ + A PLI  PP RA RLLG
Sbjct: 15 LRSTGIERSWPSAARRLSSFVNAPPLIFLPPMRAWRLLG 53

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02560.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02560.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9UV68	3.38e-08	74.36	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g02560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..132

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g02560	Cp4.1LG11g02560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g02560.1:exon:001	Cp4.1LG11g02560.1:exon:001	exon
Cp4.1LG11g02560.1:exon:002	Cp4.1LG11g02560.1:exon:002	exon
Cp4.1LG11g02560.1:exon:003	Cp4.1LG11g02560.1:exon:003	exon
Cp4.1LG11g02560.1:exon:004	Cp4.1LG11g02560.1:exon:004	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g02560.1:cds:001	Cp4.1LG11g02560.1:cds:001	CDS
Cp4.1LG11g02560.1:cds:002	Cp4.1LG11g02560.1:cds:002	CDS
Cp4.1LG11g02560.1:cds:003	Cp4.1LG11g02560.1:cds:003	CDS
Cp4.1LG11g02560.1:cds:004	Cp4.1LG11g02560.1:cds:004	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g02560.1	Cp4.1LG11g02560.1-protein	polypeptide