Cp4.1LG10g10600.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g10600.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Serine/arginine-rich splicing factor SR45a
Location	Cp4.1LG10: 3999897 .. 4003229 (+)
Sequence length	1156
RNA-Seq Expression	Cp4.1LG10g10600.1
Synteny	Cp4.1LG10g10600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATACGGAGAGATTGCTTTCGCGATTCCATAAACTCTCTCTCTCCTCGCACAAGTCACGACGGCGAGTTGCGATTCTGGGCTCGTGGAGAGGCCGTCTTCAGAAACCCTAAAAGTCCTGTTCGTATCTGTACTGTTCTTCAGCTTTTGCTGGCCGCCGTTCTAGTTTTCATCTCATTGTGAGAAATGGTAAGCTCTTCTTTCTCAGTTCTATTTTTCTTTCTTTGTCTATTGTTGTTTTTATTTCATCGATAAAAGGTTTAACAATCGAGCGTTTCTGATTCTGCGCAGGCCGATTCTCATCGCAAAAGGTGAGCTTATTTACGCTTTTTTTGTAATGATTTGTTTTCTTACGGTTGACGATCTTGGGGCTTTCTGTATCTAGGGCACGGAGATGATTTGTGTTGTAGCATTCATGATCTTCTGTAGCGTTGAACTTTTTAGCACTCCTACATGAAGGAAATAATTGTCACGAGTCTTGAGCATTTTTAGAAGGATTTTATTTCATTCATTGAGATGCCTGTAACTAGGGTTGAGCATTTTCTTGACAATGCACTGGTGGCTGTAATCACTTTAGGGTTTTGGAAAAAGTAACAAGGTCATGCATTACTTTTCTTTTTCTGTCTTGGGAAGTTCTAACAGGTAGTAATCAAGAAATCAAATTAAAAGCAATTACATTGGGTAACTATTGCTGTAATTAATGGAGTTTGAGAGATTTGAGTACTCAAATTTTGAAGTTAATATAGGGTCTGAATTGGGTCAAGTGCCATGTGAAAGAACTTTGGTCGCTTGAACTCGTACCCTTTGTTTTCATTTTAAAACTTGGCTGTTGATGATTGAGCTGGGAATAATTTCTGATGATTTCCCTTGTTCTGTTGGTTTCCTTTTTCCATTTTGACCATATTAATTTGTCAGACTTGAAAACTCGTTCTGTCAGTAATTTTCACGTTAAGGATCGATAGAAACATGGGTGAAAGAGATTATGTTCGTTTACTATATTGTAAAAATTGGCAGTTTGATAATTTAGACCATTCCATTCTTTTAGAACATCCTCATTTTAATAATTCTAATGCATTTAGATCGTCGGTGTTAGTACTACTTATGGTTGTAAGTGGCACAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGGTTGGTTTTGATTTTTCTTTATTACCTGGATAAATGGAAAGTAGAAACTACTTTTATGTTTGTGAACTCTGTAGCTTAGTACCCTATTTTTATGTTTGCACATGTTTCTGATACAGATCAAGATCCAGAAGTCGAGGAAGGTCTGTGTGTTTCTTCAGCTGGAACTCTAGACAAAATAATCAGCGCTCTATTTCAGTAGAATTAGATCTATTTGTACTTCTTTTTCATATATTGTTAGTGTTTGATTCTCCTTGGATAACATTTTTAGCTTCTTCCAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCCTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTTAGCTTCTGAACCCTATAACTTGCAGATAATTGCATGATCGTGTGAGAAGTCCCTACTTGGATCAGGATGTGAAACAAGTGTCATGACATAAATAAGACCGTATTTATTGTGTTTCTTGAAATTAAAAATGTTTCTATAGTATTTCCTGAATTAAAAAACATTTAAATGGAAATTGGGTAGACGAAAGATGGTCTCTAAGTTCAGTGTATTCATAATATCCCACTGTATTGAAAAACACTAATTGGATTAGACTCCAAATGGCCCGATGTTCTGCAATTACTTGTTTTATTTATCACGGTGTAGTCAGTTTATTCTTCCTTTCCTAATGCTTCTATTATCTGCAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGGTACTACGATTGTTCTGCTCTGGATAGCCTTGAAGAAATTTGATTGTTTTCTTTTTTGGTTTTTTCCCTTAACTTGGAGGTTTTCTGGTTATATTCAGAACAAGTTGTGTGAGCTATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAATGACAAGCTTAAACAACAGATTTCAAATGCGCCTGATCAACTAAACATATCAACTATATTGCCCAACAACTTTTCTACATCAGCATTCACTTTCAACACAACTAACCAACGGACATTATCAAGAACTTTCTAATCAGGCTTTATGGTATTTCATGCCTAGTCATTGGACACTAGTCAATTTTTCCCGACTCATGATATCAAGTGTGCCCATTTTAGGTGGCCAGTCCCCCCTTATGAACAATTTCAAAACTAGTTTTTGCATTAAGTGCTCACCGTGAAAACTATACAAACAATATAACCCTTTTATATAGTCTTGGGACATAGAGGTTACCAATTGAAGTGAGATGACACCTTTTTTGTCTTTCAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCAGGACACTACTTGGGGTTGAAAAGCACCAGAGACTCTGGTAAGTGTAACCTGTCAATTTATTCAAAACGATGGTTGNCACCAGAGACTCTGGTAAGTGTAACCTGTCAATTTATTCAAAAACGATGGTTGTTTCAAATATTCTGTGCTTTAAATTGCAATTTACTTAAACATTACCTTAAATAATAACTTCGTTGGTTATTGTATTAGGCTACCGTGGCGAACGAGGTAGCAGGTATCGTGGTGGCTCCTTCCGTGAGGACTATGGGCATCGTCGATCCCCAAGACGCTCGCCATATCGAGGGGCCCGAGAGTACTCCCCTAGACACTCACCGCCTCCATATGGTGGTGGGAGATCAAGGAGGGATCACTCTAGGTCGCCTCCTTACTCTCCTTACGGCGGCGGCAGCCCAGATAGGAGGTATCCTCGTGGCTCTAGGTGATATTGCCCCTTTTAATGTACTTTTGTGGTGCGATTAGTTAAAAGACCTACAGTGGATTATGGTTGTGTGTGTATTCGAACGTTTGTCTGTACCTCATAGTTTTAAGCAGTCCAACTGCCAGAATGTTACCATATGCTCTTTTGATTTGGTGTTTTGACATGCTTCTATAAAAAAACATTGCTCTTTGTCTTTCGTATAT

mRNA sequence

CATATACGGAGAGATTGCTTTCGCGATTCCATAAACTCTCTCTCTCCTCGCACAAGTCACGACGGCGAGTTGCGATTCTGGGCTCGTGGAGAGGCCGTCTTCAGAAACCCTAAAAGTCCTGTTCGTATCTGTACTGTTCTTCAGCTTTTGCTGGCCGCCGTTCTAGTTTTCATCTCATTGTGAGAAATGGCCGATTCTCATCGCAAAAGATCGTCGGTGTTAGTACTACTTATGGTTGTAAGTGGCACAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGATCCAGAAGTCGAGGAAGCTTCTTCCAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCCTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCAGGACACTACTTGGGGTTGAAAAGCACCAGAGACTCTGGCTACCGTGGCGAACGAGGTAGCAGGTATCGTGGTGGCTCCTTCCGTGAGGACTATGGGCATCGTCGATCCCCAAGACGCTCGCCATATCGAGGGGCCCGAGAGTACTCCCCTAGACACTCACCGCCTCCATATGGTGGTGGGAGATCAAGGAGGGATCACTCTAGGTCGCCTCCTTACTCTCCTTACGGCGGCGGCAGCCCAGATAGGAGGTATCCTCGTGGCTCTAGGTGATATTGCCCCTTTTAATGTACTTTTGTGGTGCGATTAGTTAAAAGACCTACAGTGGATTATGGTTGTGTGTGTATTCGAACGTTTGTCTGTACCTCATAGTTTTAAGCAGTCCAACTGCCAGAATGTTACCATATGCTCTTTTGATTTGGTGTTTTGACATGCTTCTATAAAAAAACATTGCTCTTTGTCTTTCGTATAT

Coding sequence (CDS)

ATGGCCGATTCTCATCGCAAAAGATCGTCGGTGTTAGTACTACTTATGGTTGTAAGTGGCACAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGATCCAGAAGTCGAGGAAGCTTCTTCCAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCCTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACGATGGACAATGTTGATGATGCTAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTCACGGAGGAAACGGCCAAGAACTCCAACGCCAGGACACTACTTGGGGTTGAAAAGCACCAGAGACTCTGGCTACCGTGGCGAACGAGGTAGCAGGTATCGTGGTGGCTCCTTCCGTGAGGACTATGGGCATCGTCGATCCCCAAGACGCTCGCCATATCGAGGGGCCCGAGAGTACTCCCCTAGACACTCACCGCCTCCATATGGTGGTGGGAGATCAAGGAGGGATCACTCTAGGTCGCCTCCTTACTCTCCTTACGGCGGCGGCAGCCCAGATAGGAGGTATCCTCGTGGCTCTAGGTGA

Protein sequence

MADSHRKRSSVLVLLMVVSGTGTLDLLLPGELLQDQDLDHDLGQGLDPDRGQGQGPEVVEDQDPEVEEASSRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR

Homology

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.4e-37
Identity = 97/186 (52.15%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 71  SRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMD 130
           S   +  NPGN+LYVTGLS RVTERDLE+HF+KEGKV+   LV++P TR SRGF F++M 
Sbjct: 65  SVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMK 124

Query: 131 NVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRD------------ 190
           +V DANRC++ L+ S+L+GR ITVEK+RR+R RTPTPG YLGL++ R             
Sbjct: 125 SVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS 184

Query: 191 ---SGYRGERGSRYRGGSFREDYGHR-RSPRRSP-YRGAREYSPRHSPPPYGGGRSRRDH 240
              S  R    S  RG S+   YG R RS   SP YR  R YSP  SP P      RRD 
Sbjct: 185 VSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDR 244

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 60/159 (37.74%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 67  EEASSRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAF 126
           +E  S  E   N GN L+V+G+++R+ E +L++ FSK G V+   ++ EP T+ SRGF F
Sbjct: 87  KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146

Query: 127 VTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERG 186
           ++   V++A   + +LN     GR + V+K++R RP +PTPG Y+G    R+S  R    
Sbjct: 147 LSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNS--RDFPS 206

Query: 187 SRYRGGSFREDYGHRRSPR-RSPYRGAREYSPRHSPPPY 225
           +   GG  R +Y  R S R R+ YR +R     HSP  Y
Sbjct: 207 NNKDGGYRRNNYRDRDSNRYRNSYRPSRP-QREHSPGNY 242

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-16
Identity = 74/185 (40.00%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 70  SSRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 129
           S+R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 130 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 189
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 190 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 242
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-16
Identity = 74/185 (40.00%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 70  SSRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 129
           S+R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 130 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 189
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 190 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 242
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-16
Identity = 74/185 (40.00%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 70  SSRGENVNN-----PGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 129
           S+R  +V N     P   L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 130 AFVTMDNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGE 189
           AFV  +NVDDA    +  N   L+GR I V+ S  KRP TPTPG Y+G  +   S  R  
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221

Query: 190 RGSRYRGGSFREDYGHRRSPR-----RSPYRGAREYSP---RHSPPPYGGGRSRRDHSRS 242
               Y  G    DY + RS R        +R A++      R SP PY      R  SRS
Sbjct: 222 YDRGYDRGYDDRDY-YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 281

[Close]

BLAST of Cp4.1LG10g10600.1 vs. NCBI nr
Match: KAA0025634.1 (serine/arginine-rich splicing factor SR45a [Cucumis melo var. makuwa] >TYK12507.1 serine/arginine-rich splicing factor SR45a [Cucumis melo var. makuwa])

HSP 1 Score: 395 bits (1014), Expect = 3.57e-136
Identity = 216/249 (86.75%), Postives = 226/249 (90.76%), Query Frame = 0


Query: 14  LLMVVSG--TGTLDLLLPGELLQDQD--LDHDLGQGLDPDRGQGQGPEVVEDQDPEVEEA 73
           LLM+  G  +GTLDLL PGELLQDQD  LDHD G G  PD GQGQ P+VVEDQ PEV  A
Sbjct: 40  LLMIELGIISGTLDLLPPGELLQDQDPDLDHDRGPGPGPDHGQGQDPQVVEDQGPEVVGA 99

Query: 74  SSRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 133
           SSR ++ NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 100 SSR-DHANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTM 159

Query: 134 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRY 193
           DNVDDANRCVKHLNQS+LEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG+RGSRY
Sbjct: 160 DNVDDANRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGSRY 219

Query: 194 RGG-SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSP 253
           RGG SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSP
Sbjct: 220 RGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSP 279

Query: 254 DRRYPRGSR 256
           DRRYPRGSR
Sbjct: 280 DRRYPRGSR 286

[Close]

BLAST of Cp4.1LG10g10600.1 vs. NCBI nr
Match: XP_022950652.1 (serine/arginine-rich splicing factor SR45a [Cucurbita moschata] >XP_022978005.1 serine/arginine-rich splicing factor SR45a [Cucurbita maxima] >XP_023543883.1 serine/arginine-rich splicing factor SR45a [Cucurbita pepo subsp. pepo] >KAG6603882.1 Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 371 bits (953), Expect = 1.31e-127
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 72  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 131
           RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN
Sbjct: 55  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 114

Query: 132 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG 191
           VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG
Sbjct: 115 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG 174

Query: 192 GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY 251
           GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY
Sbjct: 175 GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY 234

Query: 252 PRGSR 256
           PRGSR
Sbjct: 235 PRGSR 239

[Close]

BLAST of Cp4.1LG10g10600.1 vs. NCBI nr
Match: XP_016899368.1 (PREDICTED: serine/arginine-rich splicing factor SR45a [Cucumis melo])

HSP 1 Score: 334 bits (856), Expect = 8.11e-113
Identity = 175/189 (92.59%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 71  SRG-ENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 130
           SRG ++ NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 54  SRGRDHANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTM 113

Query: 131 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRY 190
           DNVDDANRCVKHLNQS+LEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG+RGSRY
Sbjct: 114 DNVDDANRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGSRY 173

Query: 191 RGG-SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSP 250
           RGG SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSP
Sbjct: 174 RGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSP 233

Query: 251 DRRYPRGSR 256
           DRRYPRGSR
Sbjct: 234 DRRYPRGSR 241

[Close]

BLAST of Cp4.1LG10g10600.1 vs. NCBI nr
Match: XP_031743118.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus])

HSP 1 Score: 327 bits (838), Expect = 4.92e-110
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 71  SRG-ENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 130
           SRG E+ NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 54  SRGREHANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTM 113

Query: 131 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG-ERGS- 190
           DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG +RGS 
Sbjct: 114 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGGDRGSS 173

Query: 191 RYRGG--SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGG 250
           RYRGG  SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  G
Sbjct: 174 RYRGGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYG 233

Query: 251 GSPDRRYPRGSR 256
           GSPDRRYPRGSR
Sbjct: 234 GSPDRRYPRGSR 244

[Close]

BLAST of Cp4.1LG10g10600.1 vs. NCBI nr
Match: KAE8647621.1 (hypothetical protein Csa_003197 [Cucumis sativus])

HSP 1 Score: 327 bits (838), Expect = 2.81e-108
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 71  SRG-ENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 130
           SRG E+ NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 54  SRGREHANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTM 113

Query: 131 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG-ERGS- 190
           DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG +RGS 
Sbjct: 114 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGGDRGSS 173

Query: 191 RYRGG--SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGG 250
           RYRGG  SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  G
Sbjct: 174 RYRGGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYG 233

Query: 251 GSPDRRYPRGSR 256
           GSPDRRYPRGSR
Sbjct: 234 GSPDRRYPRGSR 244

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy TrEMBL
Match: A0A5A7SJ12 (Serine/arginine-rich splicing factor SR45a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00870 PE=4 SV=1)

HSP 1 Score: 395 bits (1014), Expect = 1.73e-136
Identity = 216/249 (86.75%), Postives = 226/249 (90.76%), Query Frame = 0


Query: 14  LLMVVSG--TGTLDLLLPGELLQDQD--LDHDLGQGLDPDRGQGQGPEVVEDQDPEVEEA 73
           LLM+  G  +GTLDLL PGELLQDQD  LDHD G G  PD GQGQ P+VVEDQ PEV  A
Sbjct: 40  LLMIELGIISGTLDLLPPGELLQDQDPDLDHDRGPGPGPDHGQGQDPQVVEDQGPEVVGA 99

Query: 74  SSRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 133
           SSR ++ NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 100 SSR-DHANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTM 159

Query: 134 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRY 193
           DNVDDANRCVKHLNQS+LEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG+RGSRY
Sbjct: 160 DNVDDANRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGSRY 219

Query: 194 RGG-SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSP 253
           RGG SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSP
Sbjct: 220 RGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSP 279

Query: 254 DRRYPRGSR 256
           DRRYPRGSR
Sbjct: 280 DRRYPRGSR 286

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy TrEMBL
Match: A0A6J1INV2 (serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111478126 PE=4 SV=1)

HSP 1 Score: 371 bits (953), Expect = 6.33e-128
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 72  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 131
           RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN
Sbjct: 55  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 114

Query: 132 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG 191
           VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG
Sbjct: 115 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG 174

Query: 192 GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY 251
           GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY
Sbjct: 175 GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY 234

Query: 252 PRGSR 256
           PRGSR
Sbjct: 235 PRGSR 239

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy TrEMBL
Match: A0A6J1GFF0 (serine/arginine-rich splicing factor SR45a OS=Cucurbita moschata OX=3662 GN=LOC111453689 PE=4 SV=1)

HSP 1 Score: 371 bits (953), Expect = 6.33e-128
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 72  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 131
           RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN
Sbjct: 55  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 114

Query: 132 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG 191
           VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG
Sbjct: 115 VDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRG 174

Query: 192 GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY 251
           GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY
Sbjct: 175 GSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRY 234

Query: 252 PRGSR 256
           PRGSR
Sbjct: 235 PRGSR 239

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy TrEMBL
Match: A0A1S4DTT1 (serine/arginine-rich splicing factor SR45a OS=Cucumis melo OX=3656 GN=LOC103485170 PE=4 SV=1)

HSP 1 Score: 334 bits (856), Expect = 3.93e-113
Identity = 175/189 (92.59%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 71  SRG-ENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 130
           SRG ++ NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 54  SRGRDHANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTM 113

Query: 131 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRY 190
           DNVDDANRCVKHLNQS+LEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG+RGSRY
Sbjct: 114 DNVDDANRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGDRGSRY 173

Query: 191 RGG-SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGGGSP 250
           RGG SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  GGSP
Sbjct: 174 RGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYGGSP 233

Query: 251 DRRYPRGSR 256
           DRRYPRGSR
Sbjct: 234 DRRYPRGSR 241

[Close]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy TrEMBL
Match: A0A0A0KMM4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507340 PE=4 SV=1)

HSP 1 Score: 327 bits (838), Expect = 2.38e-110
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 71  SRG-ENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 130
           SRG E+ NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 54  SRGREHANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTM 113

Query: 131 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG-ERGS- 190
           DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRG +RGS 
Sbjct: 114 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGGDRGSS 173

Query: 191 RYRGG--SFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPP-YSPYGG 250
           RYRGG  SFREDYG+RRSPRRSPYRGAREYSPRHSPP YGGGRSRRDHSRSPP YSP  G
Sbjct: 174 RYRGGGGSFREDYGYRRSPRRSPYRGAREYSPRHSPP-YGGGRSRRDHSRSPPPYSPPYG 233

Query: 251 GSPDRRYPRGSR 256
           GSPDRRYPRGSR
Sbjct: 234 GSPDRRYPRGSR 244

[Close]

BLAST of Cp4.1LG10g10600.1 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-53
Identity = 122/185 (65.95%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 71  SRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMD 130
           SRG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVTM 
Sbjct: 61  SRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120

Query: 131 NVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYR 190
           ++ DA RC+K+LNQS+LEGRYITVE+SRRKRPRTPTPGHYLGLKS+RDS   G R SR R
Sbjct: 121 SLKDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREG-RSSRGR 180

Query: 191 GGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRR 250
               R+DY  RRSPR       R+YSPR         RSRRD S    YSP+ G SP+RR
Sbjct: 181 HYD-RDDYRDRRSPR-------RDYSPRDE------RRSRRDRS----YSPH-GRSPERR 225

Query: 251 YPRGS 256
             R S
Sbjct: 241 SERRS 225

[Close]

BLAST of Cp4.1LG10g10600.1 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-52
Identity = 122/186 (65.59%), Postives = 140/186 (75.27%), Query Frame = 0


Query: 71  SRGEN-VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 130
           SRG + V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVTM
Sbjct: 61  SRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 120

Query: 131 DNVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRY 190
            ++ DA RC+K+LNQS+LEGRYITVE+SRRKRPRTPTPGHYLGLKS+RDS   G R SR 
Sbjct: 121 SSLKDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDSDREG-RSSRG 180

Query: 191 RGGSFREDYGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDR 250
           R    R+DY  RRSPR       R+YSPR         RSRRD S    YSP+ G SP+R
Sbjct: 181 RHYD-RDDYRDRRSPR-------RDYSPRDE------RRSRRDRS----YSPH-GRSPER 226

Query: 251 RYPRGS 256
           R  R S
Sbjct: 241 RSERRS 226

[Close]

BLAST of Cp4.1LG10g10600.1 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.4 bits (394), Expect = 3.1e-38
Identity = 97/186 (52.15%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 71  SRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMD 130
           S   +  NPGN+LYVTGLS RVTERDLE+HF+KEGKV+   LV++P TR SRGF F++M 
Sbjct: 65  SVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMK 124

Query: 131 NVDDANRCVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRD------------ 190
           +V DANRC++ L+ S+L+GR ITVEK+RR+R RTPTPG YLGL++ R             
Sbjct: 125 SVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRS 184

Query: 191 ---SGYRGERGSRYRGGSFREDYGHR-RSPRRSP-YRGAREYSPRHSPPPYGGGRSRRDH 240
              S  R    S  RG S+   YG R RS   SP YR  R YSP  SP P      RRD 
Sbjct: 185 VSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDR 244

[Close]

BLAST of Cp4.1LG10g10600.1 vs. TAIR 10
Match: AT4G35785.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.2 bits (365), Expect = 7.2e-35
Identity = 66/86 (76.74%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 71  SRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMD 130
           SRG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVTM 
Sbjct: 76  SRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 135

Query: 131 NVDDANRCVKHLNQSILEGRYITVEK 157
           ++ DA RC+K+LNQS+LEGRYITVE+
Sbjct: 136 SLKDAERCIKYLNQSVLEGRYITVER 161

[Close]

BLAST of Cp4.1LG10g10600.1 vs. TAIR 10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.2 bits (365), Expect = 7.2e-35
Identity = 66/86 (76.74%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 71  SRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMD 130
           SRG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+EPRTR+SRGFAFVTM 
Sbjct: 76  SRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 135

Query: 131 NVDDANRCVKHLNQSILEGRYITVEK 157
           ++ DA RC+K+LNQS+LEGRYITVE+
Sbjct: 136 SLKDAERCIKYLNQSVLEGRYITVER 161

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g10600.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	4.4e-37	52.15	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	1.3e-17	37.74	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q3ZBT6	5.6e-16	40.00	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	5.6e-16	40.00	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	5.6e-16	40.00	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]

BLAST of Cp4.1LG10g10600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025634.1	3.57e-136	86.75	serine/arginine-rich splicing factor SR45a [Cucumis melo var. makuwa] >TYK12507....	[more]
XP_022950652.1	1.31e-127	100.00	serine/arginine-rich splicing factor SR45a [Cucurbita moschata] >XP_022978005.1 ...	[more]
XP_016899368.1	8.11e-113	92.59	PREDICTED: serine/arginine-rich splicing factor SR45a [Cucumis melo]	[more]
XP_031743118.1	4.92e-110	92.71	serine/arginine-rich splicing factor SR45a [Cucumis sativus]	[more]
KAE8647621.1	2.81e-108	92.71	hypothetical protein Csa_003197 [Cucumis sativus]	[more]

BLAST of Cp4.1LG10g10600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJ12	1.73e-136	86.75	Serine/arginine-rich splicing factor SR45a OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1INV2	6.33e-128	100.00	serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GFF0	6.33e-128	100.00	serine/arginine-rich splicing factor SR45a OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S4DTT1	3.93e-113	92.59	serine/arginine-rich splicing factor SR45a OS=Cucumis melo OX=3656 GN=LOC1034851...	[more]
A0A0A0KMM4	2.38e-110	92.71	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507340 PE=4 SV...	[more]

BLAST of Cp4.1LG10g10600.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35785.1	1.5e-53	65.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	2.9e-52	65.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.1	3.1e-38	52.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.4	7.2e-35	76.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.5	7.2e-35	76.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 82..155 e-value: 3.8E-25 score: 99.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..152 e-value: 3.6E-18 score: 65.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 81..159 score: 17.216459
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..166 e-value: 2.1E-29 score: 104.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..256
None	No IPR available	PANTHER	PTHR48034:SF11	RNA RECOGNITION MOTIF	coord: 74..252
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 74..252
None	No IPR available	CDD	cd12382	RRM_RBMX_like	coord: 80..159 e-value: 2.25697E-39 score: 129.651
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 70..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG10g10600	Cp4.1LG10g10600	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g10600.1:five_prime_utr:001	Cp4.1LG10g10600.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g10600.1:exon:001	Cp4.1LG10g10600.1:exon:001	exon
Cp4.1LG10g10600.1:exon:002	Cp4.1LG10g10600.1:exon:002	exon
Cp4.1LG10g10600.1:exon:003	Cp4.1LG10g10600.1:exon:003	exon
Cp4.1LG10g10600.1:exon:004	Cp4.1LG10g10600.1:exon:004	exon
Cp4.1LG10g10600.1:exon:005	Cp4.1LG10g10600.1:exon:005	exon
Cp4.1LG10g10600.1:exon:006	Cp4.1LG10g10600.1:exon:006	exon
Cp4.1LG10g10600.1:exon:007	Cp4.1LG10g10600.1:exon:007	exon
Cp4.1LG10g10600.1:exon:008	Cp4.1LG10g10600.1:exon:008	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g10600.1:cds:008	Cp4.1LG10g10600.1:cds:008	CDS
Cp4.1LG10g10600.1:cds:007	Cp4.1LG10g10600.1:cds:007	CDS
Cp4.1LG10g10600.1:cds:006	Cp4.1LG10g10600.1:cds:006	CDS
Cp4.1LG10g10600.1:cds:005	Cp4.1LG10g10600.1:cds:005	CDS
Cp4.1LG10g10600.1:cds:004	Cp4.1LG10g10600.1:cds:004	CDS
Cp4.1LG10g10600.1:cds:003	Cp4.1LG10g10600.1:cds:003	CDS
Cp4.1LG10g10600.1:cds:002	Cp4.1LG10g10600.1:cds:002	CDS
Cp4.1LG10g10600.1:cds:001	Cp4.1LG10g10600.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g10600.1:three_prime_utr:001	Cp4.1LG10g10600.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g10600.1	Cp4.1LG10g10600.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding