Cp4.1LG10g05240.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g05240.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
LocationCp4.1LG10: 1061077 .. 1062346 (+)
Sequence length850
RNA-Seq ExpressionCp4.1LG10g05240.1
SyntenyCp4.1LG10g05240.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGTAAAACGTGAGGCGGTAAGCCAGCAAGGACATTGGGTCCCTAAAGGGTGGGTTGGAGAGGAAACGAAATGTTCCCTCTCATTGATGATGCACTCGGTATTCAAGAAGGTGGGTTGAAGAGGGAACAAACCATCCAGATGTATCTCTAGGGAGAATTTTGGCACTAAAGCCAAAAATTTATTAAAATAATTTAAATGAAGATGGATCCGAGGGTTTAATAGTAATTAGAGACGAGTCATCCAAATATTTGCGCCATTGGATCAGAGTGATCTGATCTCATAGGTTCTGAAGTATGTTCGTACGGTACGAGCGCATACACAAGAATACCTAAAAGCCGAAGTAAAGGGCTAAAACCTCAAGAAAACCCCAACGAAGAATTTCCGAATTCCTTTGCTAAATCCCTAAAGCATGTCCTCCGCCGCTGCCATGGCTGCTAGATCAGCCTTCAGATCAACCCTAGCCCGAGCCACTATCTCCCGCAGACTTACCAATGGTGCCAAAGTGAAATCACCCGCATCTCCGTTCAGCATCCCCAAGCAGAATCCACTCTCCCAGTCCCCTCGCATTTTGAGGTAAATTTTCGATGAAACTTCTTTGGTATTTCGAATTTTGTTATGTGTCTGATGGATTTTTATCTTGAAGATCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACGTCTATGCTTTCCGTCTCTCGTCGTAGCTACGGTTGGACTTCTGAAGGTACTTTCATGCTCTTATCGCTGAATTTTTCTATGTAAACATCTGAATTGCTTGTTCGTTCGTTTTTTTTAATTGAGTTTTCCCTCTTGTCCTGTTGAGCTTTAGCTTTGGGTTGGTGATTCTACCTTTTTTAATGGCTAGGTTCTTATGGTTCCCTTATCCCTAATCCAAGGTGGTGGGGGGTTATATCTTAGGTGCATTCAAAATGTGGTTGAGCAGTAAATGTTCATTGAGAATTTGAAAGAACAATTTTGTTCGTGTGGCTGGAGAATTTTTAATTTTCATTTTCGTCAACCCATCTTTTAGTCTCTTGCGCGATGAAAGAGTGCACATTGCTTTTCCTTTTGTAGGACAAGACGAGACTATTTGAGGTCTCAGCATGAACGGTGGAATGACTGGATTTATTTTTGTTGTCGACTTTTTGGAAATTGTGGTAAAATATTTCTCGAGTGGATTGTGTTAGAAAACCATTCTTTTGTGGTGAATCCGAGCTCAGAGATTCA

mRNA sequence

AGAGTAAAACGTGAGGCGGTAAGCCAGCAAGGACATTGGGTCCCTAAAGGGTGGGTTGGAGAGGAAACGAAATGTTCCCTCTCATTGATGATGCACTCGGTATTCAAGAAGGTGGGTTGAAGAGGGAACAAACCATCCAGATGTATCTCTAGGGAGAATTTTGGCACTAAAGCCAAAAATTTATTAAAATAATTTAAATGAAGATGGATCCGAGGGTTTAATAGTAATTAGAGACGAGTCATCCAAATATTTGCGCCATTGGATCAGAGTGATCTGATCTCATAGGTTCTGAAGTATGTTCGTACGGTACGAGCGCATACACAAGAATACCTAAAAGCCGAAGTAAAGGGCTAAAACCTCAAGAAAACCCCAACGAAGAATTTCCGAATTCCTTTGCTAAATCCCTAAAGCATGTCCTCCGCCGCTGCCATGGCTGCTAGATCAGCCTTCAGATCAACCCTAGCCCGAGCCACTATCTCCCGCAGACTTACCAATGGTGCCAAAGTGAAATCACCCGCATCTCCGTTCAGCATCCCCAAGCAGAATCCACTCTCCCAGTCCCCTCGCATTTTGAGATCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACGTCTATGCTTTCCGTCTCTCGTCGTAGCTACGGTTGGACTTCTGAAGGACAAGACGAGACTATTTGAGGTCTCAGCATGAACGGTGGAATGACTGGATTTATTTTTGTTGTCGACTTTTTGGAAATTGTGGTAAAATATTTCTCGAGTGGATTGTGTTAGAAAACCATTCTTTTGTGGTGAATCCGAGCTCAGAGATTCA

Coding sequence (CDS)

ATGTCCTCCGCCGCTGCCATGGCTGCTAGATCAGCCTTCAGATCAACCCTAGCCCGAGCCACTATCTCCCGCAGACTTACCAATGGTGCCAAAGTGAAATCACCCGCATCTCCGTTCAGCATCCCCAAGCAGAATCCACTCTCCCAGTCCCCTCGCATTTTGAGATCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACGTCTATGCTTTCCGTCTCTCGTCGTAGCTACGGTTGGACTTCTGAAGGACAAGACGAGACTATTTGA

Protein sequence

MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEMSCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI
Homology
[Close]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-10
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0 

Query: 2   SSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEMS 61
           +SA    ARS  R+  +R+  +      ++ KS    F    +     SP  LR+PVE+S
Sbjct: 3   TSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSP--LRNPVELS 62

Query: 62  CCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 102
            CVESLLPYHSATASAL+TS LS+S ++YGW S+  ++ +
Sbjct: 63  FCVESLLPYHSATASALMTSKLSISGQTYGWLSDACNDDV 100

[Close]
BLAST of Cp4.1LG10g05240.1 vs. NCBI nr
Match: XP_023543073.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186 bits (472), Expect = 4.81e-59
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
           MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM
Sbjct: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60

Query: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101
           SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI
Sbjct: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101

[Close]
BLAST of Cp4.1LG10g05240.1 vs. NCBI nr
Match: XP_022926141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_022978785.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 182 bits (463), Expect = 1.13e-57
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
           MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQS RILRSPVEM
Sbjct: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101
           SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI
Sbjct: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101

[Close]
BLAST of Cp4.1LG10g05240.1 vs. NCBI nr
Match: XP_023543076.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176 bits (446), Expect = 3.93e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96

[Close]
BLAST of Cp4.1LG10g05240.1 vs. NCBI nr
Match: XP_023543071.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176 bits (446), Expect = 6.28e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96

[Close]
BLAST of Cp4.1LG10g05240.1 vs. NCBI nr
Match: XP_023543072.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174 bits (442), Expect = 1.81e-54
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0 

Query: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
           MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM
Sbjct: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60

Query: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101
           SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSE  ++ +
Sbjct: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDCNDDV 101

[Close]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy TrEMBL
Match: A0A6J1IR78 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111478642 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 5.49e-58
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
           MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQS RILRSPVEM
Sbjct: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101
           SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI
Sbjct: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101

[Close]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy TrEMBL
Match: A0A6J1EE17 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433337 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 5.49e-58
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
           MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQS RILRSPVEM
Sbjct: 1   MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101
           SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI
Sbjct: 61  SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDETI 101

[Close]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy TrEMBL
Match: A0A6J1IM18 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111478642 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 4.48e-54
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQS RILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96

[Close]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy TrEMBL
Match: A0A6J1EK68 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111433337 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 4.48e-54
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQS RILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96

[Close]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy TrEMBL
Match: A0A6J1IM12 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478642 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 7.40e-54
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQS RILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEG 96

[Close]
BLAST of Cp4.1LG10g05240.1 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-18
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 8   AARSAFRSTLARATISR-RLTNGAK--VKSPASPFSIPKQNPLSQSPRILRSPVEMSCCV 67
           AARS FRS  +RA+ +  R + G K    S  + F +PKQ+PL+   RI RSPVE+SCCV
Sbjct: 3   AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTN--RIFRSPVELSCCV 62

Query: 68  ESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDET 101
           E++LPYH+ATASALL SMLSVSRR  GW  +G DET
Sbjct: 63  ETMLPYHTATASALLNSMLSVSRR--GWIVDGLDET 94

[Close]
BLAST of Cp4.1LG10g05240.1 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-18
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 8   AARSAFRSTLARATISR-RLTNGAK--VKSPASPFSIPKQNPLSQSPRILRSPVEMSCCV 67
           AARS FRS  +RA+ +  R + G K    S  + F +PKQ+PL+   RI RSPVE+SCCV
Sbjct: 3   AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTN--RIFRSPVELSCCV 62

Query: 68  ESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDET 101
           E++LPYH+ATASALL SMLSVSRR  GW  +G DET
Sbjct: 63  ETMLPYHTATASALLNSMLSVSRR--GWIVDGLDET 94

[Close]
BLAST of Cp4.1LG10g05240.1 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-18
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 8   AARSAFRSTLARATISR-RLTNGAK--VKSPASPFSIPKQNPLSQSPRILRSPVEMSCCV 67
           AARS FRS  +RA+ +  R + G K    S  + F +PKQ+PL+   RI RSPVE+SCCV
Sbjct: 3   AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTN--RIFRSPVELSCCV 62

Query: 68  ESLLPYHSATASALLTSMLSVSRRSYGWTSEGQDET 101
           E++LPYH+ATASALL SMLSVSRR  GW  +G DET
Sbjct: 63  ETMLPYHTATASALLNSMLSVSRR--GWIVDGLDET 94

[Close]
BLAST of Cp4.1LG10g05240.1 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-18
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEMSCCVESL 67
          AARS FRS + RA ++   +      S  S F +PKQ+PLS   RI RSPVE+SCCVE++
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSH--RIFRSPVELSCCVETM 62

Query: 68 LPYHSATASALLTSMLSVSRRSYGWTSEG 97
          LPYH+ATASALL SMLSVS RS  WT +G
Sbjct: 63 LPYHTATASALLNSMLSVSGRSI-WTFQG 88

[Close]
BLAST of Cp4.1LG10g05240.1 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-17
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSPRILRSPVEMSCCVESL 67
          AARS FRS + RA ++   +      S  S F +PKQ+PLS   RI RSPVE+SCCVE++
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSH--RIFRSPVELSCCVETM 62

Query: 68 LPYHSATASALLTSMLSVSRRSYGWT 94
          LPYH+ATASALL SMLSVS RS  WT
Sbjct: 63 LPYHTATASALLNSMLSVSGRSI-WT 85

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g05240.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ34.0e-1043.00Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Cp4.1LG10g05240.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543073.14.81e-59100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
XP_022926141.11.13e-5799.01protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_023543076.13.93e-55100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 ... [more]
XP_023543071.16.28e-55100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_023543072.11.81e-5494.06protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
BLAST of Cp4.1LG10g05240.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IR785.49e-5899.01protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
A0A6J1EE175.49e-5899.01protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1IM184.48e-5498.96protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 ... [more]
A0A6J1EK684.48e-5498.96protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 ... [more]
A0A6J1IM127.40e-5498.96protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of Cp4.1LG10g05240.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28395.25.4e-1858.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.15.4e-1858.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.35.4e-1858.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G33847.29.2e-1858.43unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G33847.14.6e-1759.30unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..52
NoneNo IPR availablePANTHERPTHR33156:SF49SUBFAMILY NOT NAMEDcoord: 1..96
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..96

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG10g05240Cp4.1LG10g05240gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g05240.1:five_prime_utr:001Cp4.1LG10g05240.1:five_prime_utr:001five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g05240.1:exon:001Cp4.1LG10g05240.1:exon:001exon
Cp4.1LG10g05240.1:exon:002Cp4.1LG10g05240.1:exon:002exon
Cp4.1LG10g05240.1:exon:003Cp4.1LG10g05240.1:exon:003exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g05240.1:cds:003Cp4.1LG10g05240.1:cds:003CDS
Cp4.1LG10g05240.1:cds:002Cp4.1LG10g05240.1:cds:002CDS
Cp4.1LG10g05240.1:cds:001Cp4.1LG10g05240.1:cds:001CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g05240.1:three_prime_utr:001Cp4.1LG10g05240.1:three_prime_utr:001three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG10g05240.1Cp4.1LG10g05240.1-proteinpolypeptide