Cp4.1LG09g07860.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g07860.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Rho_N domain-containing protein
Location	Cp4.1LG09: 7412961 .. 7415478 (+)
Sequence length	1258
RNA-Seq Expression	Cp4.1LG09g07860.1
Synteny	Cp4.1LG09g07860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATCTATCACCACTGTCCATGAGACAAGGTCCTTGTCGGGTTGAAATTCTGGGAGATTGCAAAGAAGCTCCATGGCATTTTTAAGATCACCCACTTCACAAAACTCCATGCCTTTTCGAATTAGGTTTGACAAAGATGAAAGAACGCCGAAATTTCAAGCTCACTAAGCCAAGATGATAGTGCCCTGCCGGCGATATCCAGAACATCGGAGGGGTTCTGCTATCAGTACCATCATTTGCCGCAAATCCCAGTAAGAAACGGAAAAAACGGTGATGAATTTCAGCTATTAAACAAATAGCGGTAGCAATAATGGCGACAAATCAAAAGAAACGACGAACACTGAGATAGCCACGTGGGAGCACGAGATTCAGAAGCTTGTGGGCAGCCCACGTTATAACACACCCATACATTACACCTTGTGGATCAGATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACAAGGAGGAGACCCATTTTCACTTTGAAAGGTATGAATCTCCACATTTTATCAGATTCCCAGAAAAACCCATCTAGAATTCTTTTGTATTTCACGAGCTGAGGGATTAATTTTTATGCAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAACATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGCCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATTCTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGTAATTTCTTGATTGTCTCATCTGGTGCATTCGTGAGAAATTTGCCCCACCTTTGAATCCATCATTGCATCTTGCAAGAACTAAAGTCATTAACATAAACATCTCTTTCATGGTATACAAGAAGCAAGGAAAGAACCTTGATGATAAGTTACCAATATGGCTCCTGAACCATTGTTGTAAGTTGTCATGAAGTATAGGTTCATGCATCTTCGGTTTAAGATTGTTGGGAGTGAGTCCCACATTGGTTAATTTAGGGAATGATCATGAGTTTATAAGTAAAGGAATACATCTTCATTGGAATGAGGCTTTTTGGTGGAATGAGGCTTTTTGGAGAAACCAAAAGCAAAGCCATGGGAACTTATACTCAAAGTGGACAATATCATACCATTGTGATGAGTCGTAATTTCTAACATGGTATCAGAGTCATGCCCTTAACTTAGCCAATGTCAATAGAATCCTGAAATGTCGAACAAAAAAGTTGTGAGCCTCGATGGTATAGTCAAAAGTGACTCAAATGTCAAGCAAAGGGTGTACTTTGTTCGAGGGGAGAATTGTTGAAGAATACATCTCCATTGGTATATTGGGGAAGCCCAAAGCAGAGTCATGAGAGGTTATGCTCAAAGTGGACAATATCATACCCCATTGTGGAGAGTCATGATTCCTAACATCTCTTGTGCATGTATTGGCATTTAGTTGGTTCATAACTCTCATTTATTTGGTTCATAACCCTTTTGGTTCATCTTCCATTTTGATACACGAATCATCTTGATTCATGTATGACATTAACGTTTCTATGTCATATAAAGGGTTGTCTAGGATGGTTGAGATGCGTAGAGTTTGTTTGTTTGAGTGTCACTTTGTATTTGTTGAGTGACATTTAGGAAGAACTTTGTCGAGAGACTTTGTAGTGTGAGAGTGTAAGATATACACTTCGTAAACACTTTGATTATAGAGATTGGTAGCTACCCGTGGATATAGGGAAATTTCTTTTCTCCGAATCAAGTAAATCTTTGTGTCTCTTTGTTTAACTTCTGTTAGTAGGTGTGTGAGTGCGATCGTTCTCACTTCCGCTTTTTCGTTACAACAAAAGTATCGTGTTCCGACTGACTCTATGACTGAATGGATGTGCATTATAACTTGTATGGACAGGCAAAACTTTAAAGAATGCAGGAGGAGTTAAAGGGTTAAGAAGAAAAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCTCCGGCAGGAGGAAATGGTTCGCATCTTACAGTGGAGAATATGAAACTTAGGGAGCTGAAAGCAGTTGCAAAGTCTAGAGGAATTAAGGGTTACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCT

mRNA sequence

ATATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATCTATCACCACTGTCCATGAGACAAGGTCCTTGTCGGGTTGAAATTCTGGGAGATTGCAAAGAAGCTCCATGGCATTTTTAAGATCACCCACTTCACAAAACTCCATGCCTTTTCGAATTAGGTTTGACAAAGATGAAAGAACGCCGAAATTTCAAGCTCACTAAGCCAAGATGATAGTGCCCTGCCGGCGATATCCAGAACATCGGAGGGGTTCTGCTATCAGTACCATCATTTGCCGCAAATCCCAGTAAGAAACGGAAAAAACGGTGATGAATTTCAGCTATTAAACAAATAGCGGTAGCAATAATGGCGACAAATCAAAAGAAACGACGAACACTGAGATAGCCACGTGGGAGCACGAGATTCAGAAGCTTGTGGGCAGCCCACGTTATAACACACCCATACATTACACCTTGTGGATCAGATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACAAGGAGGAGACCCATTTTCACTTTGAAAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAACATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGCCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATTCTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGAGGAGTTAAAGGGTTAAGAAGAAAAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCTCCGGCAGGAGGAAATGGTTCGCATCTTACAGTGGAGAATATGAAACTTAGGGAGCTGAAAGCAGTTGCAAAGTCTAGAGGAATTAAGGGTTACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCT

Coding sequence (CDS)

ATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATTCTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGAGGAGTTAAAGGGTTAAGAAGAAAAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCTCCGGCAGGAGGAAATGGTTCGCATCTTACAGTGGAGAATATGAAACTTAGGGAGCTGAAAGCAGTTGCAAAGTCTAGAGGAATTAAGGGTTACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCT

Protein sequence

MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGGVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS

Homology

[Close]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy Swiss-Prot
Match: Q8L4E7 (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 103 VENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
           +  +K+ EL+ +AKSRGIKGYSK+KKN+L+ELL++
Sbjct: 339 LSTLKVTELRELAKSRGIKGYSKMKKNDLVELLSN 373

[Close]

BLAST of Cp4.1LG09g07860.1 vs. NCBI nr
Match: XP_023542167.1 (uncharacterized protein LOC111802132, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247 bits (631), Expect = 6.99e-80
Identity = 137/144 (95.14%), Postives = 137/144 (95.14%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG  
Sbjct: 152 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGKT 211

Query: 61  -----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKA 120
                GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKA
Sbjct: 212 LKNAGGVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKA 271

Query: 121 VAKSRGIKGYSKLKKNELLELLTS 137
           VAKSRGIKGYSKLKKNELLELLTS
Sbjct: 272 VAKSRGIKGYSKLKKNELLELLTS 295

[Close]

BLAST of Cp4.1LG09g07860.1 vs. NCBI nr
Match: XP_022994883.1 (uncharacterized protein LOC111490473 [Cucurbita maxima])

HSP 1 Score: 243 bits (619), Expect = 5.38e-79
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG  
Sbjct: 86  MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGKT 145

Query: 61  ----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAV 120
               GVKGLRRK TSEAAAEFKLVRPPSNFVKRSPIP+PAGGNGSHLTVENMKL+ELKAV
Sbjct: 146 LKNAGVKGLRRKDTSEAAAEFKLVRPPSNFVKRSPIPTPAGGNGSHLTVENMKLKELKAV 205

Query: 121 AKSRGIKGYSKLKKNELLELLTS 137
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 206 AKSRGIKGYSKLKKNELLELLTS 228

[Close]

BLAST of Cp4.1LG09g07860.1 vs. NCBI nr
Match: KAG6573318.1 (hypothetical protein SDJN03_27205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242 bits (617), Expect = 4.95e-78
Identity = 133/143 (93.01%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDED+NKDEDGTESILEALTESRKQVKG  
Sbjct: 133 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKT 192

Query: 61  ----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAV 120
               GVKGLRR GTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNG+HLTVENMKL+ELKAV
Sbjct: 193 LKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAV 252

Query: 121 AKSRGIKGYSKLKKNELLELLTS 137
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 253 AKSRGIKGYSKLKKNELLELLTS 275

[Close]

BLAST of Cp4.1LG09g07860.1 vs. NCBI nr
Match: XP_022954445.1 (uncharacterized protein LOC111456710, partial [Cucurbita moschata])

HSP 1 Score: 241 bits (615), Expect = 1.87e-77
Identity = 133/143 (93.01%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDE+SNKDEDGTESILEALTESRKQVKG  
Sbjct: 153 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDENSNKDEDGTESILEALTESRKQVKGKT 212

Query: 61  ----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAV 120
               GVKGLRR GTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNG+HLTVENMKL+ELKAV
Sbjct: 213 LKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAV 272

Query: 121 AKSRGIKGYSKLKKNELLELLTS 137
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 273 AKSRGIKGYSKLKKNELLELLTS 295

[Close]

BLAST of Cp4.1LG09g07860.1 vs. NCBI nr
Match: KAG7012488.1 (hypothetical protein SDJN02_25240, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240 bits (612), Expect = 8.48e-77
Identity = 132/143 (92.31%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDED+NKDEDGTESILEALTESRKQVKG  
Sbjct: 168 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDTNKDEDGTESILEALTESRKQVKGKT 227

Query: 61  ----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAV 120
               GVKGLRR GTSEAA EFKLVRPPSNFVKRSPIPSPAGGNG+HLTVENMKL+ELKAV
Sbjct: 228 LKNAGVKGLRRTGTSEAAPEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAV 287

Query: 121 AKSRGIKGYSKLKKNELLELLTS 137
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 288 AKSRGIKGYSKLKKNELLELLTS 310

[Close]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy TrEMBL
Match: A0A6J1K6B8 (uncharacterized protein LOC111490473 OS=Cucurbita maxima OX=3661 GN=LOC111490473 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 2.60e-79
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG  
Sbjct: 86  MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGKT 145

Query: 61  ----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAV 120
               GVKGLRRK TSEAAAEFKLVRPPSNFVKRSPIP+PAGGNGSHLTVENMKL+ELKAV
Sbjct: 146 LKNAGVKGLRRKDTSEAAAEFKLVRPPSNFVKRSPIPTPAGGNGSHLTVENMKLKELKAV 205

Query: 121 AKSRGIKGYSKLKKNELLELLTS 137
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 206 AKSRGIKGYSKLKKNELLELLTS 228

[Close]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy TrEMBL
Match: A0A6J1GSF6 (uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC111456710 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 9.05e-78
Identity = 133/143 (93.01%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDE+SNKDEDGTESILEALTESRKQVKG  
Sbjct: 153 MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDENSNKDEDGTESILEALTESRKQVKGKT 212

Query: 61  ----GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAV 120
               GVKGLRR GTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNG+HLTVENMKL+ELKAV
Sbjct: 213 LKNAGVKGLRRTGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGTHLTVENMKLKELKAV 272

Query: 121 AKSRGIKGYSKLKKNELLELLTS 137
           AKSRGIKGYSKLKKNELLELLTS
Sbjct: 273 AKSRGIKGYSKLKKNELLELLTS 295

[Close]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy TrEMBL
Match: A0A6J1CGN3 (uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.54e-53
Identity = 112/170 (65.88%), Postives = 122/170 (71.76%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +K PKSNNQEEIIALFRKIQTSIA+++A++ DEDS++DE G ESILE+L ESRKQVKG  
Sbjct: 79  LKNPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRT 138

Query: 61  ----GVKGLRRKGTSEA--------AAEFKLVRPPSNFVKRSPIPSPAGGNGSHL----- 120
               GVK LRRKG SE         AAEFKLVRPPS FVKRSPIPSP G NGS       
Sbjct: 139 SKKAGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREE 198

Query: 121 --------------TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 137
                         +VENMKL ELKAVAKSRGIKGYSKLKKNELLELL S
Sbjct: 199 PSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 248

[Close]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy TrEMBL
Match: A0A6J1CF22 (uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 2.84e-53
Identity = 112/170 (65.88%), Postives = 122/170 (71.76%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +K PKSNNQEEIIALFRKIQTSIA+++A++ DEDS++DE G ESILE+L ESRKQVKG  
Sbjct: 100 LKNPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRT 159

Query: 61  ----GVKGLRRKGTSEA--------AAEFKLVRPPSNFVKRSPIPSPAGGNGSHL----- 120
               GVK LRRKG SE         AAEFKLVRPPS FVKRSPIPSP G NGS       
Sbjct: 160 SKKAGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREE 219

Query: 121 --------------TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 137
                         +VENMKL ELKAVAKSRGIKGYSKLKKNELLELL S
Sbjct: 220 PSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 269

[Close]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 2.58e-44
Identity = 100/161 (62.11%), Postives = 113/161 (70.19%), Query Frame = 0


Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +KK K N+QEEIIALFRKIQ SIA+E+ASSIDE+S+KDE G  SILE L E RKQ+KG  
Sbjct: 114 IKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSILETLREPRKQLKGKT 173

Query: 61  ----GVKGLRRKGTSEA----------AAEFKLVRPPSNFVKRSPIP-----SPAGGNGS 120
               G K  R KGTSE           AA+FKLVRPPS FVKRSPIP     S A     
Sbjct: 174 SKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPPKVDASQAIAESR 233

Query: 121 HL---TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 137
            L   ++ENMKL ELKA+AKSRGIKGYSKLKKNEL+E+L S
Sbjct: 234 ELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELMEILRS 274

[Close]

BLAST of Cp4.1LG09g07860.1 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21
Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 4   PKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDG-----TESILEALTESRKQVKG 63
           P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE       T++IL+ L +SRK+ +G
Sbjct: 90  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 149

Query: 64  GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVEN------------- 123
               ++ K       + +L RPPS+FVKR+P+ S A G    L V N             
Sbjct: 150 DT-SVKEKPPKR---QVELPRPPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEE 209

Query: 124 -------MKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
                  MKL ELK VAK+RGIKGYSKL+K+ELLEL+ S
Sbjct: 210 KASLIETMKLAELKEVAKNRGIKGYSKLRKSELLELIRS 244

[Close]

BLAST of Cp4.1LG09g07860.1 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-20
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 4   PKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDG-----TESILEALTESRKQVKG 63
           P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE       T++IL+ L +SRK+ +G
Sbjct: 90  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 149

Query: 64  GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAVAKSR 123
               ++ K       + +L RPPS+FVKR+P+ S A G            RELK VAK+R
Sbjct: 150 DT-SVKEKPPKR---QVELPRPPSSFVKRTPLSSSASGP-----------RELKEVAKNR 209

Query: 124 GIKGYSKLKKNELLELLTS 138
           GIKGYSKL+K+ELLEL+ S
Sbjct: 210 GIKGYSKLRKSELLELIRS 213

[Close]

BLAST of Cp4.1LG09g07860.1 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-20
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 4   PKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDG-----TESILEALTESRKQVKG 63
           P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE       T++IL+ L +SRK+ +G
Sbjct: 65  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 124

Query: 64  GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAVAKSR 123
               ++ K       + +L RPPS+FVKR+P+ S A G            RELK VAK+R
Sbjct: 125 DT-SVKEKPPKR---QVELPRPPSSFVKRTPLSSSASGP-----------RELKEVAKNR 184

Query: 124 GIKGYSKLKKNELLELLTS 138
           GIKGYSKL+K+ELLEL+ S
Sbjct: 185 GIKGYSKLRKSELLELIRS 188

[Close]

BLAST of Cp4.1LG09g07860.1 vs. TAIR 10
Match: AT1G06190.1 (Rho termination factor )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 103 VENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
           +  +KL EL+ +AKSRG+KG SK+KK EL+ELL S
Sbjct: 364 LSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g07860.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4E7	1.5e-04	60.00	SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV...	[more]

BLAST of Cp4.1LG09g07860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542167.1	6.99e-80	95.14	uncharacterized protein LOC111802132, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022994883.1	5.38e-79	93.71	uncharacterized protein LOC111490473 [Cucurbita maxima]	[more]
KAG6573318.1	4.95e-78	93.01	hypothetical protein SDJN03_27205, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954445.1	1.87e-77	93.01	uncharacterized protein LOC111456710, partial [Cucurbita moschata]	[more]
KAG7012488.1	8.48e-77	92.31	hypothetical protein SDJN02_25240, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG09g07860.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6B8	2.60e-79	93.71	uncharacterized protein LOC111490473 OS=Cucurbita maxima OX=3661 GN=LOC111490473...	[more]
A0A6J1GSF6	9.05e-78	93.01	uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC1114567...	[more]
A0A6J1CGN3	1.54e-53	65.88	uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CF22	2.84e-53	65.88	uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7UMB7	2.58e-44	62.11	SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]

BLAST of Cp4.1LG09g07860.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18740.1	1.9e-21	41.51	Rho termination factor	[more]
AT4G18740.2	2.7e-20	43.88	Rho termination factor	[more]
AT4G18740.3	2.7e-20	43.88	Rho termination factor	[more]
AT1G06190.1	2.1e-04	60.00	Rho termination factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011112	Rho termination factor, N-terminal	PFAM	PF07498	Rho_N	coord: 104..132 e-value: 2.1E-8 score: 34.0
None	No IPR available	GENE3D	1.10.720.10		coord: 101..132 e-value: 3.3E-6 score: 28.9
None	No IPR available	PANTHER	PTHR34449	RHO TERMINATION FACTOR	coord: 2..137
None	No IPR available	PANTHER	PTHR34449:SF2	RHO TERMINATION FACTOR	coord: 2..137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g07860	Cp4.1LG09g07860	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g07860.1:exon:001	Cp4.1LG09g07860.1:exon:001	exon
Cp4.1LG09g07860.1:exon:002	Cp4.1LG09g07860.1:exon:002	exon
Cp4.1LG09g07860.1:exon:003	Cp4.1LG09g07860.1:exon:003	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g07860.1:five_prime_utr:001	Cp4.1LG09g07860.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG09g07860.1:five_prime_utr:002	Cp4.1LG09g07860.1:five_prime_utr:002	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g07860.1:cds:001	Cp4.1LG09g07860.1:cds:001	CDS
Cp4.1LG09g07860.1:cds:002	Cp4.1LG09g07860.1:cds:002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g07860.1	Cp4.1LG09g07860.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination