Cp4.1LG09g06840.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g06840.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Cytochrome c oxidase biogenesis protein Cmc1-like
Location	Cp4.1LG09: 5963214 .. 5963498 (-)
Sequence length	285
RNA-Seq Expression	Cp4.1LG09g06840.1
Synteny	Cp4.1LG09g06840.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCGGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAAGCGGAGGCGGTGCGAACACTCTGCTCTAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAACAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

mRNA sequence

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCGGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAAGCGGAGGCGGTGCGAACACTCTGCTCTAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAACAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Coding sequence (CDS)

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCGGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAAGCGGAGGCGGTGCGAACACTCTGCTCTAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAACAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Protein sequence

MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL

Homology

[Close]

BLAST of Cp4.1LG09g06840.1 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (499), Expect = 2.19e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
          AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

[Close]

BLAST of Cp4.1LG09g06840.1 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 193 bits (491), Expect = 3.64e-62
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
          AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

[Close]

BLAST of Cp4.1LG09g06840.1 vs. NCBI nr
Match: XP_022955041.1 (uncharacterized protein LOC111457119 [Cucurbita moschata])

HSP 1 Score: 192 bits (488), Expect = 1.05e-61
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
          AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

[Close]

BLAST of Cp4.1LG09g06840.1 vs. NCBI nr
Match: KAG6573459.1 (hypothetical protein SDJN03_27346, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012607.1 hypothetical protein SDJN02_25359, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191 bits (484), Expect = 4.26e-61
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLE+ALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
          AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

[Close]

BLAST of Cp4.1LG09g06840.1 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 169 bits (428), Expect = 1.49e-52
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Cp4.1LG09g06840.1 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 1.76e-62
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
          AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

[Close]

BLAST of Cp4.1LG09g06840.1 vs. ExPASy TrEMBL
Match: A0A6J1GSM0 (uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC111457119 PE=4 SV=1)

HSP 1 Score: 192 bits (488), Expect = 5.06e-62
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
          AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

[Close]

BLAST of Cp4.1LG09g06840.1 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 169 bits (428), Expect = 7.23e-53
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Cp4.1LG09g06840.1 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 1.11e-50
Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1   MVPTGKAPI--GGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNE 60
           M+PTG+API  GG GGCERLEQALRDCH+R+P+GPARRS C HLNRS AECLVAT CPNE
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61  AEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
           AEAVRTLCS+ GTALKRSQC+QAKFS S CLSSLQL
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 109

[Close]

BLAST of Cp4.1LG09g06840.1 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 4.03e-50
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Cp4.1LG09g06840.1 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-29
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 15  CERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEQAKFSFSLCLSSLQ 94
           R QCE A+ S SLCLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06840.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542217.1	2.19e-63	100.00	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]
XP_022994930.1	3.64e-62	98.94	uncharacterized protein LOC111490507 [Cucurbita maxima]	[more]
XP_022955041.1	1.05e-61	97.87	uncharacterized protein LOC111457119 [Cucurbita moschata]	[more]
KAG6573459.1	4.26e-61	96.81	hypothetical protein SDJN03_27346, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004145445.1	1.49e-52	83.87	uncharacterized protein LOC101219184 [Cucumis sativus]	[more]

BLAST of Cp4.1LG09g06840.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K2P5	1.76e-62	98.94	uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507...	[more]
A0A6J1GSM0	5.06e-62	97.87	uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]
A0A0A0LYC1	7.23e-53	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
A0A6J1CN74	1.11e-50	82.29	uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5D3CLT3	4.03e-50	81.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG09g06840.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31175.1	3.7e-29	70.89	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g06840	Cp4.1LG09g06840	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06840.1:exon:001	Cp4.1LG09g06840.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06840.1:cds:001	Cp4.1LG09g06840.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06840.1	Cp4.1LG09g06840.1-protein	polypeptide