Cp4.1LG09g06540.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g06540.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	heterogeneous nuclear ribonucleoprotein 1-like
Location	Cp4.1LG09: 4942778 .. 4947289 (+)
Sequence length	1404
RNA-Seq Expression	Cp4.1LG09g06540.1
Synteny	Cp4.1LG09g06540.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTAAGTTTTTTGAATTCTTCTTTTGATTTTGCTAATCAATATGCTCATGGAAGGATCATGGTTTTCTTGATTGTTCTTTGGTGTTCATCATGATTGAAACTTGTCAGAACTCTTCTTACATTTACATTTTTTTGAGTTCCACAACTCGGGGATGAGAATTTGAATATCTTGTTGAGGATTGTTGGGAGGGAGTCGTACATTGGCTAATTTAGGGAATGATACTGAGTTTATAATTAAGGAATACATCTCTATTAGTATGAGGCCGTTTTGGGAAGCCAAAAGCAAACTAACGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGGGATTCCTAACATGGTATCAAAGTCATGCCCTTAACTTAGCCATGTGAATAGAATTCTCAAATGTCGAATAAAGAAGTTGTGAGCCTCGAAGGTGTAGTTAAAAGTGACTCAAGTGTTGAACAAAGGGTGTGTCCTACATTGGCTAATTTAGGGGTTTATAAGTAAGGAATACATCCCCATTGGTATGAGGCCTTACGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGGTCTGTGATTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGCCATATCAATAGAAAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGGTGTGTCCCACATTGGCTAATTTAGGGGTATATAAGTAACGAATACATCTCCATTAGTATGAGACCTTTTGGGGAAACCAAACAGTACACAATCATACCATTGTGGAGAGTCGTGGTTCCTAACACTAGTTAACGTCGAATCACTTTTGTGTTGAAAAACATATAAACTATAATTTTCCTTTGGAGCTTTGGATGGGAAGATTTGGCTGTCTGCATTTTATCAGGGTGAATTTTGTTTCATGTGGCTGTTCATATTTTTGTGGAAGTACAATGCCGCCTGCATTTGCCCCGAATTTCAATCGTTTCGGGAACCGATTGTTTATACATGTTCTAGAAAAGGTAATAAGCACGATGACAGTAAAGGAATGGTTTGAAACTAGTCCAAGTGAGCATAACTCAATGGTAACTAGCTATACCCTCGACCGAGAAAGGACATCGGAAGAATTGAAACTCAGATTTGTGAAAATTCGGGGGCTCGATATCTTATGGAGTTCGTGGATGCACGGACATTAGGATTTACATGTGATGTTCACTGCTTATATTAAAATGATACATTTTGTTGCGTCAAGATATATCTATTTGTATCGTAATTAGAGTAAAGTTTATCATGTTCATGTTTCGATATTGATTTTTTTGTTTTAGGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTCAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGTTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTGAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAATGCCTCGCACCTGAGGACGTTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACGCAGGTTCTTCTCCATTCAATGGTGCTGGTAATGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCTGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGTGTTTCTAATACACAGTCGAATAGAGGTGAATCTCTCTCTATCTCTTTCGTTCTTTTATCGTCGTTACATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAGAGTGTGGAAACCTCTCCCCAGTAGACGTGTTTTCAAAACCTTGAGGGTAAGTTCGAAGGGGAAATCCTAAGGAGGACAATATCTGCTAGCGGTGGGGTTGGGTTGTTACAACTGATATCAGAGCTAGACACTAGGCGATGTGCCAATGGGGAGGTTGTTCCTTGAAGGGGGTAGACACAAGGCGATGTGCCAGTAAAGACGCTAGGCCCTGAAGGGGGGTGGATTTGGTAGGAGTCCCACATCGATTGGAGAAAGGAATGAGTGCCAGCGATAACGTTGGGCCCTGAAGGGGGTGGATTGTTTGAGATCCCACATCAGTTGGAGAGGAGAACAAAACACCCTTTATAAGAGTGTGGAAACCTCTCGCTAGTAGATGCGTTTTAAAATCCTTGAGGGTAAGCCCGAAAGGGAAAACCCAAAGAGGACAATATCTACTAGCGGTGGGAACGGGCTATTACAAATGGTATCAAAGCCAAACATCGGGCAATGTGCCAGCTAAGAGGCTGTTCTCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGTTGGACCCCGAAGGGGGTGGATTTGGTAGGGGTCCCACATCGATTGAAGAAAGGAATGAGTGTCAGCGAGGACGCTGGACCCTGAAGGGGGTGGATTATGAGATCCCACATCAGTTGGGGGGGAGGAGAACGAAACACTCTCTACAGGGTGTGGAAACCTCTCCCTAGTAGTAGACGTGTTTTAAAATCTTTGAGGGTAAACTCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGCATTACATCTCTACAAACATTAGATCTTCGAGCTTATTGATATCAGTTTAAGCATGATTAAAACGCAACGACGTTACTTGAACAAGATCTGTTTATGAATGGTGAAATGTTTGTTTGATTCAGGAATTGCTGCTNCGAGGGCTTGGGAGTTAGCAAACTCTCTATAACAGTATTGACACTCGTATTTCCTCTCACCGGATGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCACCTCCGCCTCCTCCTCCTCCTCCCCCTCCTCCCATATGATAATATGATACTGTGAGAGCTAATTTGTTTTCTGTTTTGAGAAAGTGTCCCATAAAAGAAAGCAGGTTCCAGAGGGTTTGGTTTTTGGATTGAGCTTGAAAATATAGGTATTTTCTTCCTTTCTTTACTTGTAATTTGATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTCTGATCATACGTTACTCCGACAAAGAAACGGTGTCACACGAACGAATCGACATCATATTTTTTCTTCTTTTCTTTGGTTTCGGGTTCGTTTTAGAACAACTCATTCAGGCTTTCTTCTTGTTGTTTCATCTCTTGTTATTATTATTAGCGGTTCTGGGTTTTTACTTCTCATGTGATTGATTGTATGAAACTGAGGTTGATTTATTTAGACATAGATCATACTCTCCATCTACCTTCCTTCCAATTCTTTCTTACTTTACAGCAAAAACGGATCTACAAATTATCTGCGATTACTTTATGCATGTGCTATGGTTTTTATTTACAATGCTACCATCAACTGGGTGCAATGGTGCGTTGTCTTTACCTAAAACAAAAGAGTAGCATATGCTTTGAATATTTTAACGGTTACAGGGTGCATTGCCTTTATCTAA

mRNA sequence

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTCAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGTTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTGAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAATGCCTCGCACCTGAGGACGTTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACGCAGGTTCTTCTCCATTCAATGGTGCTGGTAATGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCTGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGGTGCATTGCCTTTATCTAA

Coding sequence (CDS)

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTCAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGTTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTGAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAATGCCTCGCACCTGAGGACGTTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACGCAGGTTCTTCTCCATTCAATGGTGCTGGTAATGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCTGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGGTGCATTGCCTTTATCTAA

Protein sequence

SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYGCIAFI

Homology

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BLAST of Cp4.1LG09g06540.1 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-61
Identity = 172/442 (38.91%), Postives = 235/442 (53.17%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLF+GGISW+TDED+L+++F  YGEV + ++MRD+ TGR RGFGFV+FSDP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 124
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +F++YF+ +G +TD  +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 185 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRF-SPVTVG 244
           RA+PK+ +P       G    S G  GS   GY QGY        G     RF    +VG
Sbjct: 184 RALPKDANP-------GGGGRSMGGGGS--GGY-QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 245 RGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVY 304
            G  S  S GYG G          YG G NG+    YG      Y G+   YG+ +   Y
Sbjct: 244 NGLPSYGSSGYGAG----------YGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGY 303

Query: 305 GGGS---GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG 364
           G  +    G GS    + +N W    +S   N  +     GSG  H+G          +G
Sbjct: 304 GATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSG----------YG 363

Query: 365 VGHGENAGSSPFNGAGNVEFGNG---GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 424
           V        SP +G  N  +G G   GS  GYG        + + Y          G+N 
Sbjct: 364 VPGAAPPTQSP-SGYSNQGYGYGGYSGSDSGYG--------NQAAYGVVGGRPSGGGSNN 396

Query: 425 EGN-----SFYGHSSWQSLPTE 431
            G+       YG  SW+S P++
Sbjct: 424 PGSGGYMGGGYGDGSWRSDPSQ 396

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BLAST of Cp4.1LG09g06540.1 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.6e-45
Identity = 123/323 (38.08%), Postives = 173/323 (53.56%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  D L+ YF  +GE+ E M+MRD  T R+RGFGFV F+DP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKE-LSPVPNRNQLGAYPYS-------FGRVG--SYLSGYNQGYNTTSVGGYGLRSDGRF 244
           PKE + P   R +    PY+        G +G  ++++ Y +GY       YG +  G F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 245 SPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGS 304
                G    + ++   G G N            P   ++L YG     S  GN     S
Sbjct: 259 PAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADL-YGPASQDSGVGNYISAAS 318

Query: 305 PSPMVYGGGSGGNGSILSSSVQN 317
           P P   G G G  G +++++  N
Sbjct: 319 PQP-GSGFGHGIAGPLIATAFTN 325

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-44
Identity = 126/340 (37.06%), Postives = 176/340 (51.76%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  D L+ YF  +GE+ E M+MRD  T R+RGFGFV F+DP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKE-LSPVPNRNQLGAYPYS-------FGRVG--SYLSGYNQGYNTTSVGGYGLRSDGRF 244
           PKE + P   R +    PY+        G +G  ++++ Y +GY       YG +  G F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 245 SPVTVGRGGLSPISPGYGIGLN-LDAGLNLNYGTGPNGSSNL----------------IY 304
                G    + ++   G  LN   A  N      P GS+                  +Y
Sbjct: 259 PAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPVADLY 318

Query: 305 GRVMSSSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQN 317
           G     S  GN     SP P   G G G  G +++++  N
Sbjct: 319 GPASQDSGVGNYISAASPQP-GSGFGHGIAGPLIATAFTN 343

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-44
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  + L+ YF  YG++ E M+M+D  T R+RGFGFV FSDP    +V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +DG+ V+ K A PR       R +  ++     TRTKKIFVGGL++  T  D 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDV 146

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K YF+QFG I DA++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKEL 188
           PKE+
Sbjct: 207 PKEV 198

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.0e-44
Identity = 102/228 (44.74%), Postives = 143/228 (62.72%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D  KLF+GGI+ +T E+ LKQYF  YG V+E ++ +++ TG+ RGFGFV F++     + 
Sbjct: 4   DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDD-----------QNILSRNNTGI--LGSPGPT-RTKKIF 124
           + + H I G+ V+ +KA+ + +           +  + + N G+  + S G T RTKKIF
Sbjct: 64  LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123

Query: 125 VGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFH 184
           VGGL+S  TE +FK YF++FG  TD VVM+D  T RPRGFGF+TY+SE+SVE V+   FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183

Query: 185 ELNGKMVEVKRAVPKELSPVPNRNQLGAYP-YSFGRVGSYLSGYNQGY 218
           EL+ K VEVKRA+PKE     N N +   P YS  +   Y+   N GY
Sbjct: 184 ELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQN-GY 230

[Close]

BLAST of Cp4.1LG09g06540.1 vs. NCBI nr
Match: XP_023542103.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 905 bits (2339), Expect = 0.0
Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 459

[Close]

BLAST of Cp4.1LG09g06540.1 vs. NCBI nr
Match: XP_022966755.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 903 bits (2334), Expect = 0.0
Identity = 457/459 (99.56%), Postives = 458/459 (99.78%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGEN 
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRS+RSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSVRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 459

[Close]

BLAST of Cp4.1LG09g06540.1 vs. NCBI nr
Match: KAG6573534.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 903 bits (2333), Expect = 0.0
Identity = 457/462 (98.92%), Postives = 460/462 (99.57%), Query Frame = 0


Query: 1   SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV 60
           SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFV+FSDPVV
Sbjct: 20  SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVLFSDPVV 79

Query: 61  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 120
           AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE
Sbjct: 80  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 139

Query: 121 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 180
           SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK
Sbjct: 140 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 199

Query: 181 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR 240
           RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFS VTVGR
Sbjct: 200 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSRVTVGR 259

Query: 241 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 300
           GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG
Sbjct: 260 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 319

Query: 301 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 360
           GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG
Sbjct: 320 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 379

Query: 361 ENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 420
           EN GSSPFNG+GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG
Sbjct: 380 ENTGSSPFNGSGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 439

Query: 421 HSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           HSSWQSLPTELEDSSS+GFGLGNAASDVISRNNASGYTVGYG
Sbjct: 440 HSSWQSLPTELEDSSSVGFGLGNAASDVISRNNASGYTVGYG 481

[Close]

BLAST of Cp4.1LG09g06540.1 vs. NCBI nr
Match: XP_022925356.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 902 bits (2332), Expect = 0.0
Identity = 457/459 (99.56%), Postives = 458/459 (99.78%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIG+NLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGVNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGEN 
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 459

[Close]

BLAST of Cp4.1LG09g06540.1 vs. NCBI nr
Match: KAG7012649.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 880 bits (2273), Expect = 0.0
Identity = 446/447 (99.78%), Postives = 446/447 (99.78%), Query Frame = 0


Query: 1   SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV 60
           SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV
Sbjct: 1   SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV 60

Query: 61  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 120
           AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE
Sbjct: 61  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 120

Query: 121 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 180
           SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK
Sbjct: 121 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 180

Query: 181 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR 240
           RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR
Sbjct: 181 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR 240

Query: 241 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 300
           GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG
Sbjct: 241 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 300

Query: 301 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 360
           GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG
Sbjct: 301 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 360

Query: 361 ENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 420
           EN GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG
Sbjct: 361 ENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 420

Query: 421 HSSWQSLPTELEDSSSIGFGLGNAASD 447
           HSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 HSSWQSLPTELEDSSSIGFGLGNAASD 447

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy TrEMBL
Match: A0A6J1HSH2 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466370 PE=4 SV=1)

HSP 1 Score: 903 bits (2334), Expect = 0.0
Identity = 457/459 (99.56%), Postives = 458/459 (99.78%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGEN 
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRS+RSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSVRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 459

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy TrEMBL
Match: A0A6J1EBZ7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111432644 PE=4 SV=1)

HSP 1 Score: 902 bits (2332), Expect = 0.0
Identity = 457/459 (99.56%), Postives = 458/459 (99.78%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIG+NLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGVNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGEN 
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 459

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy TrEMBL
Match: A0A6J1CL94 (heterogeneous nuclear ribonucleoprotein 1 OS=Momordica charantia OX=3673 GN=LOC111012638 PE=4 SV=1)

HSP 1 Score: 806 bits (2083), Expect = 1.41e-292
Identity = 415/469 (88.49%), Postives = 437/469 (93.18%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YFQ++GEVVEVMIMRDR TGRARGFGFVVF+DPV+AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVIAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITD VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQLG YPY FGRVGSYL+GYNQGYN  SVGGYGLRSDGRFSP++VGRGGL
Sbjct: 181 PKESSPVPNRNQLGGYPYGFGRVGSYLNGYNQGYNPASVGGYGLRSDGRFSPISVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLD GL+ NYG GPNG+SNL YGRVMS SYG NLNRYGSP+PM+YGGGS
Sbjct: 241 SPISPGYGIGLNLDTGLSPNYGAGPNGNSNLSYGRVMSPSYGVNLNRYGSPNPMLYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNVGNSAG N+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGANSSHLRTFPGSGGVHTGTNSLNSIGGLWGASASLGH 360

Query: 364 GENAGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GENAGS PFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENAGS-PFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRN+A GYTVGYG
Sbjct: 421 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNSA-GYTVGYG 466

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy TrEMBL
Match: A0A1S3CK54 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501720 PE=4 SV=1)

HSP 1 Score: 800 bits (2065), Expect = 7.19e-290
Identity = 414/469 (88.27%), Postives = 433/469 (92.32%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YPY+FGRVGSYL+GYNQGYN TSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+G+NLD GLN NYGTGP  SSNL YGRVMS SYGGNLNRYGSP+PMVYGGG 
Sbjct: 241 SPISPGYGMGINLDTGLNPNYGTGP--SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV NSAGTN+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 364 GENAGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN GS PFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENGGS-PFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA GYTVGYG
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA-GYTVGYG 464

[Close]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy TrEMBL
Match: A0A5D3E516 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00810 PE=4 SV=1)

HSP 1 Score: 800 bits (2065), Expect = 2.86e-289
Identity = 414/469 (88.27%), Postives = 433/469 (92.32%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 38  MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 97

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 98  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 157

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 158 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 217

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YPY+FGRVGSYL+GYNQGYN TSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 218 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 277

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+G+NLD GLN NYGTGP  SSNL YGRVMS SYGGNLNRYGSP+PMVYGGG 
Sbjct: 278 SPISPGYGMGINLDTGLNPNYGTGP--SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 337

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV NSAGTN+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 338 GGNGSILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 397

Query: 364 GENAGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN GS PFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 398 GENGGS-PFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 457

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGYTVGYG 462
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA GYTVGYG
Sbjct: 458 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNA-GYTVGYG 501

[Close]

BLAST of Cp4.1LG09g06540.1 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 431.8 bits (1109), Expect = 7.0e-121
Identity = 264/486 (54.32%), Postives = 324/486 (66.67%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDT+E+RLK+YF ++GEV+E +I++DR TGRARGFGFVVF+DP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 124
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 125 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 184
           FK YF+QFGT TD VVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 185 VPKELSPVPNRNQLGA-YPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRG 244
           VPKELSP P+R+ LGA Y Y   RV + L+GY QG+N  +VGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 245 GLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGG 304
           G +  S GYG+ +N D GL   +  G N + N+ YGR MS  Y GN NR+G P+    GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 305 GSGGNGSILSSSVQNLWGNVG----NSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGV 364
             GGN S  SS  +NLWGN G    N+  TN S+  T+   GG  +G ++L+G  G  GV
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTN-SNSNTY--MGGSSSGNNTLSGPFGNSGV 363

Query: 365 GHGENAGSSPFNGAGNVEFGNGGS--------VVGY-----GRSIRSNVSSASLYSAPNI 424
             G   G +      NV+FG GG+          GY     G +  +  SS S  SA N 
Sbjct: 364 NWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNN 423

Query: 425 --YD-----EVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNA--ASDVISRNNAS 462
             YD     E +GN     + Y   +W+S   E E  +   +G+G    +SDV +R+++ 
Sbjct: 424 TGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSP 481

[Close]

BLAST of Cp4.1LG09g06540.1 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 431.8 bits (1109), Expect = 7.0e-121
Identity = 264/486 (54.32%), Postives = 324/486 (66.67%), Query Frame = 0


Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDT+E+RLK+YF ++GEV+E +I++DR TGRARGFGFVVF+DP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 124
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 125 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 184
           FK YF+QFGT TD VVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 185 VPKELSPVPNRNQLGA-YPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRG 244
           VPKELSP P+R+ LGA Y Y   RV + L+GY QG+N  +VGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 245 GLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGG 304
           G +  S GYG+ +N D GL   +  G N + N+ YGR MS  Y GN NR+G P+    GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 305 GSGGNGSILSSSVQNLWGNVG----NSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGV 364
             GGN S  SS  +NLWGN G    N+  TN S+  T+   GG  +G ++L+G  G  GV
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTN-SNSNTY--MGGSSSGNNTLSGPFGNSGV 363

Query: 365 GHGENAGSSPFNGAGNVEFGNGGS--------VVGY-----GRSIRSNVSSASLYSAPNI 424
             G   G +      NV+FG GG+          GY     G +  +  SS S  SA N 
Sbjct: 364 NWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNN 423

Query: 425 --YD-----EVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNA--ASDVISRNNAS 462
             YD     E +GN     + Y   +W+S   E E  +   +G+G    +SDV +R+++ 
Sbjct: 424 TGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSP 481

[Close]

BLAST of Cp4.1LG09g06540.1 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 375.2 bits (962), Expect = 7.8e-104
Identity = 225/456 (49.34%), Postives = 290/456 (63.60%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVL KH+IDG+ VEAKKAVPRDD  + +++N+ + GSPGP+ +KKIFVGGLAS+VTE++F
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V+KVL KTFHELNGKMVEVK AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PK+++    RNQ+    +   R+ S L+ Y QG++ + + GYG++ + R+SP    RGG 
Sbjct: 183 PKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SP   GYGI LN +     NYG+G +G     +GR  S  Y  +L R+G  S M  GG S
Sbjct: 243 SPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFSPGYAASLGRFG--SQMESGGAS 302

Query: 304 GGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSGGVHTGTSSLNGIGGLWGVGHGE 363
            GNGS+L+++ +N LWGN G    +N+   R +F G+ G+    SSL  IG  WG     
Sbjct: 303 VGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGM----SSLGSIGDNWGTVARA 362

Query: 364 NAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGH 423
            +      G   +E   G  V GY        S +S+               E +S Y  
Sbjct: 363 RSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL--------------EADSLYSD 420

Query: 424 SSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGY 458
           S W SLP + E+      GLG    D +SR  A GY
Sbjct: 423 SMWLSLPAKAEE------GLGMGPLDFMSRGPA-GY 420

[Close]

BLAST of Cp4.1LG09g06540.1 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 375.2 bits (962), Expect = 7.8e-104
Identity = 225/456 (49.34%), Postives = 290/456 (63.60%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVL KH+IDG+ VEAKKAVPRDD  + +++N+ + GSPGP+ +KKIFVGGLAS+VTE++F
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V+KVL KTFHELNGKMVEVK AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PK+++    RNQ+    +   R+ S L+ Y QG++ + + GYG++ + R+SP    RGG 
Sbjct: 183 PKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SP   GYGI LN +     NYG+G +G     +GR  S  Y  +L R+G  S M  GG S
Sbjct: 243 SPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFSPGYAASLGRFG--SQMESGGAS 302

Query: 304 GGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSGGVHTGTSSLNGIGGLWGVGHGE 363
            GNGS+L+++ +N LWGN G    +N+   R +F G+ G+    SSL  IG  WG     
Sbjct: 303 VGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGM----SSLGSIGDNWGTVARA 362

Query: 364 NAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGH 423
            +      G   +E   G  V GY        S +S+               E +S Y  
Sbjct: 363 RSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL--------------EADSLYSD 420

Query: 424 SSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGY 458
           S W SLP + E+      GLG    D +SR  A GY
Sbjct: 423 SMWLSLPAKAEE------GLGMGPLDFMSRGPA-GY 420

[Close]

BLAST of Cp4.1LG09g06540.1 vs. TAIR 10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 362.8 bits (930), Expect = 4.0e-100
Identity = 225/478 (47.07%), Postives = 290/478 (60.67%), Query Frame = 0


Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 123
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 124 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESV 183
           GP+ +KKIFVGGLAS+VTE++FKKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 184 EKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTS 243
           +KVL KTFHELNGKMVEVK AVPK+++    RNQ+    +   R+ S L+ Y QG++ + 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 244 VGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMS 303
           + GYG++ + R+SP    RGG SP   GYGI LN +     NYG+G +G     +GR  S
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFS 302

Query: 304 SSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSG 363
             Y  +L R+G  S M  GG S GNGS+L+++ +N LWGN G    +N+   R +F G+ 
Sbjct: 303 PGYAASLGRFG--SQMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 364 GVHTGTSSLNGIGGLWGVGHGENAGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLY 423
           G+    SSL  IG  WG      +      G   +E   G  V GY        S +S+ 
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL 422

Query: 424 SAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNNASGY 458
                         E +S Y  S W SLP + E+      GLG    D +SR  A GY
Sbjct: 423 --------------EADSLYSDSMWLSLPAKAEE------GLGMGPLDFMSRGPA-GY 442

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06540.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	2.1e-61	38.91	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q96DH6	3.6e-45	38.08	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1	[more]
Q920Q6	1.8e-44	37.06	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1	[more]
Q9VVE5	1.8e-44	50.00	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R...	[more]
Q9C652	3.0e-44	44.74	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1	[more]

BLAST of Cp4.1LG09g06540.1 vs. NCBI nr


Match Name	Identity	Description
XP_023542103.1	100.00	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022966755.1	99.56	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima]	[more]
KAG6573534.1	98.92	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_022925356.1	99.56	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata]	[more]
KAG7012649.1	99.78	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Cp4.1LG09g06540.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSH2	0.0	99.56	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EBZ7	0.0	99.56	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CL94	1.41e-292	88.49	heterogeneous nuclear ribonucleoprotein 1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A1S3CK54	7.19e-290	88.27	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350172...	[more]
A0A5D3E516	2.86e-289	88.27	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Cp4.1LG09g06540.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07810.1	7.0e-121	54.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	7.0e-121	54.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.1	7.8e-104	49.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.2	7.8e-104	49.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.4	4.0e-100	47.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..79 e-value: 2.8E-22 score: 90.0 coord: 108..180 e-value: 4.1E-24 score: 96.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..74 e-value: 1.5E-15 score: 56.8 coord: 109..167 e-value: 2.4E-16 score: 59.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 107..184 score: 17.676954
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..83 score: 17.728121
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..89 e-value: 1.8E-26 score: 94.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 104..190 e-value: 2.1E-26 score: 93.9
None	No IPR available	PANTHER	PTHR48032:SF1	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE	coord: 4..462
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 4..462
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 105..184 e-value: 2.62384E-48 score: 158.683
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..102
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 103..205

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g06540	Cp4.1LG09g06540	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06540.1:exon:003	Cp4.1LG09g06540.1:exon:003	exon
Cp4.1LG09g06540.1:exon:002	Cp4.1LG09g06540.1:exon:002	exon
Cp4.1LG09g06540.1:exon:001	Cp4.1LG09g06540.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06540.1:cds:003	Cp4.1LG09g06540.1:cds:003	CDS
Cp4.1LG09g06540.1:cds:002	Cp4.1LG09g06540.1:cds:002	CDS
Cp4.1LG09g06540.1:cds:001	Cp4.1LG09g06540.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g06540.1	Cp4.1LG09g06540.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding