Cp4.1LG07g07710.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g07710.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG07: 6821547 .. 6825462 (+)
Sequence length	735
RNA-Seq Expression	Cp4.1LG07g07710.1
Synteny	Cp4.1LG07g07710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTTAGTGTCATAATCACACTTTTCTAATGACGGGACAACGTTGGTGTGTGACAGGTGTTCTCACCTCACGAGCAAGTCAATTGTGCAAAACTTGGGCTTTATGGACAATCTCAATGTTGGATTTATAAAACGTGAGAGAGAAAATGAGTTGAATTTCGCCGGTTGCATTAAAACATATAGGCAAGAGAGTTTACGAACTCTTTGTTGGTGGAGGTTTGACAATTACTTAGTCTTCATGGTATGATCGAGGATGGCTTGAGTATGCGGCCTTAAGCGACATTGCTGCGGACAAGCATACCCGAGGCACTTAGTACATGTAGGAGGCTGGTTGTGCACTCGTCTCCAAAGTCCACACTCCTTTCTTCTGCACCCACATTATCTGTGAGATCCCGAGAGGGGAGCGAAACATTCTTTAAAAGGGCGTGGAAACCTCTCTCTATCAAAGTGGATAACATATGCTAGCGATAGACTTGAACTGTTACATCATGTCTTGATAATTGAATTTGCAAGGATTAAATTTTTTTTTAAAATTTTTTATTAACTCATTTCAAATATTTATAATTTAATTTTAGTTAAATTCATAAATATATCCTTAAATTTTGTATTTTATCTTAAAAATATTTTAATCTTTTTTGAAAATTTCAATAATATTCATAAAACTTCAAAAATCGTTATGAATATTCATGAGATGGATTTTTCGTCGGAGATGTGAGCGGTGGTTCGTCTGAATTCCGACGATCTTTACGGCCATCTGAACCGAGAATCGTTTCATGATGGAATTGAACTCTCTTGTTGCAGCGGTAGCAAATCCGCACTGCTTTCCGACAAATTTGAAACAGAAACGCCCAATTTTGTTCCAGCAGAGACGCCCCGCAGGTCGAGCGTCGGCTCGTAAGGTACGCCTCAATCACGGAAGTAATTTAGCAGTTTGAATTCAGATTCTGATGATTAATTTTCAGTTTCTTCCGCTTTTATCGTCATTTGTTGGTTTGTGGTTAGATAAAATTTGGGGGGAAATGGAAAATTGTGATAAATACGCGGATGTTATATTATCATGTTATCCAGAACTCGAATGATAATTTGTGTGTATGAACTGCTGTGATGATTGATTGTTAATTTAGATTAAGCCTAAGTTCTGAAGAATCGGTTCTGAATGTGTTGTCTTGAAACTTGGAGATGATTAATTGTATGAACTGTTAAGTAGTCTCATCAGGGACTTTGATGTTACTAGGGATTGTTCTTGTAAATAAAATTGAATGCAAAAGGTCCTCTTTGAAGTGGCTTGCTCATGATAAGATGAGGGTTTGAGGCTGTGGGTGGATGCCAGGTTAAATCTCCTTTAGGACCATGTTAGGCTAGTGGCTTGGACCTTCGTTCCAATGTTGAGTTAGAGTGAATCTAATCCTTTGATTTATTCTTGACGTTTCAAGATTGATGATAACTCTCTGCAAGAACTTAGCAGGGCATAGTTTAGGCATTATCAATACTTGAAATTAAAATCACGTTCTTTCATTTTCAAGTAAGATTTAGATCAGTTTGGGTTTAGTTCTTGATCATGTTTAGAGGTAAGAGCCCTAGCCCTTGGAAAGACCTCACTAATTGGCTTTCGTTGTTATCTGATAATTATTTGAAGTTGGGGATCGGTCAAGTCACAGATCTTTTTCTGGAAGAACAATGTGTGGGGACTGTGTTCCTTGTGGAGTTTGTCTAGAATGTACTTGTTGATATTACTCTTCAGTGACCTATGGCTATGGCTATGGCTATAGCTATGGCTTTTACGGGGGAAATTATTGCATGAAATACATTATTCAAGAGAGATGAGATTTATGCAACTGCTAGCCGATATTGTCCTCTTTGAGCTTTCCCTTGAAGTTTTTAAAACCCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCAATGTGGGATCTCACAATCCATCCCCTTCGGGGCCCAGCATCCTTGCTGGCACACCGCCTCGTGTCCACCCCCCTTCGGGACTCAGTCTCCTCGCTGGCATGTTGCCCAGTGTCTGGCTCTGATACCATTTGGAACGGCCCAAGCCTACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCTTTTTGGGTTTCTTCTCAAGGTTGTTAAAACTCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCAATGTGGGATCTCACAATCCATCCCCTTCGGGGCCCAGCATCCTTGCTGGCACACCGCCTCGTGTCCACCCCCCTTCGGGACTCAGTCTCCTCGCTGGCATGTTGCCCAGTGTCTGGCTCTGATACCATTTGGAACGGCCCAAGCCTACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCTTTTTGGGTTTCTTCTCAAGGTTGTTAAAACTCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTCCGTTCTCCTCTCCAACTGACATGGGATCTCACAATTTATGAGTGGACAGATAACGCATTCGATTCAAGGAAAATACTCTGAGATGAAGGCATATTAACAAAAGGACTTACATATCACAATTATTTCTTGGGGAAATCCGTACAGCTAATGGAGATCTGTACAATTTGGAGCTTTAAAGTAACAAAACAGAAATAGAGTGATTTATCAACTGATGAACATGTTATAGATATTCACACTTCCCTAATTTTGTTTATTTTATACGCAATGTACTTAGGATAGATACTCCGGCAGAACAAAGAAAAAGGAAGCTTTGCTGGCGATGATTTTTCTATCAACCATTCCCAAGTGATTGAGAAATTGAGCCAAAGAAGAACGCCTGTTTTAGCTCAAGAGATTTTCTTGGAGCTGAAACCTGAAGAATTTCCATTAAACAACTCGACGTTGTCTTCTCTTATGGTACGCTACATAGATGGTGGTCTTCTCCTCCAAGCAGAAGCAATTTGGGAAGAAATGTTAAACAGTTGTTTCGTGCCTTCCGTTTTAGTAATTTCAAAGTTACTTAACACATACGGAAAGATGAGACGCTTCGATGATATAATTAAAGTTCTGGATCAGGTAAAGATAAGGTATTTACACTTACTCCCTGAGGCATACTCATTAGCCATATCATGTTTTGGGAAGCATGGTCAATTAGAATTGATGGAAAACACTTTGAGGGAAATGGTTTCCAGTGGTGTTCCAGTTGATTCCCGTACAGGAAATTCCTTTATTGTATACTACAGCATTTTTGGTTCTTTGATGGAGATGGAAACCGCCTATGGCCGCCTTAAAAGGTCTCGATTTCTAATCGAGAAGGAAGGCATCCTGGCAATGGCGTTCGCCTACATAAGGGAAAGAAAATTTTACAGATTAGGGGAATTTCTTAGGGATGTTGGTCTTAGAAGGAAAAACGTGGGGAATCTGTTATGGAATCTTCTACTTTTATCTTATGCTGCAAATTTCAAAATGAAAAGCTTGCAGCGTGAGTTTCTGGCAATGGTTGAAGCTGGATTTAATCCGGATATTACAACGTTTAATATTAGAGCTGTGGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACATATGAAACACATGAAGATCGAACCCGATCTCGTGTCGTACGGTTGTGTTGTTGATGCATATGTAGATAGAAGACTTGGAAGGAATTTGGAATTCGTTTTGAGCAAAATGAATCCAGATCAACCACCAATATCATTAACTGATCCGTTTGTTTTTGAGGCATTGGGTAAAGGAGATTTCCACATGAGCTCTGAGGCGTTCATGCAGTTCCAGAAGCAGAAGAAATGGACTTACAGAGAGTTGATATCATTGTATCTGAAAAAGCAACACAGAAGAGATCAAGTCTTTTGGAATTACTAG

mRNA sequence

ATGGCGGTAGCAAATCCGCACTGCTTTCCGACAAATTTGAAACAGAAACGCCCAATTTTGTTCCAGCAGAGACGCCCCGCAGGTCGAGCGTCGGCTCGTAAGATGGAAACCGCCTATGGCCGCCTTAAAAGGTCTCGATTTCTAATCGAGAAGGAAGGCATCCTGGCAATGGCGTTCGCCTACATAAGGGAAAGAAAATTTTACAGATTAGGGGAATTTCTTAGGGATGTTGGTCTTAGAAGGAAAAACGTGGGGAATCTGTTATGGAATCTTCTACTTTTATCTTATGCTGCAAATTTCAAAATGAAAAGCTTGCAGCGTGAGTTTCTGGCAATGGTTGAAGCTGGATTTAATCCGGATATTACAACGTTTAATATTAGAGCTGTGGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACATATGAAACACATGAAGATCGAACCCGATCTCGTGTCGTACGGTTGTGTTGTTGATGCATATGTAGATAGAAGACTTGGAAGGAATTTGGAATTCGTTTTGAGCAAAATGAATCCAGATCAACCACCAATATCATTAACTGATCCGTTTGTTTTTGAGGCATTGGGTAAAGGAGATTTCCACATGAGCTCTGAGGCGTTCATGCAGTTCCAGAAGCAGAAGAAATGGACTTACAGAGAGTTGATATCATTGTATCTGAAAAAGCAACACAGAAGAGATCAAGTCTTTTGGAATTACTAG

Coding sequence (CDS)

ATGGCGGTAGCAAATCCGCACTGCTTTCCGACAAATTTGAAACAGAAACGCCCAATTTTGTTCCAGCAGAGACGCCCCGCAGGTCGAGCGTCGGCTCGTAAGATGGAAACCGCCTATGGCCGCCTTAAAAGGTCTCGATTTCTAATCGAGAAGGAAGGCATCCTGGCAATGGCGTTCGCCTACATAAGGGAAAGAAAATTTTACAGATTAGGGGAATTTCTTAGGGATGTTGGTCTTAGAAGGAAAAACGTGGGGAATCTGTTATGGAATCTTCTACTTTTATCTTATGCTGCAAATTTCAAAATGAAAAGCTTGCAGCGTGAGTTTCTGGCAATGGTTGAAGCTGGATTTAATCCGGATATTACAACGTTTAATATTAGAGCTGTGGCATTTTCAAGAATGGATTTGTTATGGGATCTTCATCTTAGCCTTGAACATATGAAACACATGAAGATCGAACCCGATCTCGTGTCGTACGGTTGTGTTGTTGATGCATATGTAGATAGAAGACTTGGAAGGAATTTGGAATTCGTTTTGAGCAAAATGAATCCAGATCAACCACCAATATCATTAACTGATCCGTTTGTTTTTGAGGCATTGGGTAAAGGAGATTTCCACATGAGCTCTGAGGCGTTCATGCAGTTCCAGAAGCAGAAGAAATGGACTTACAGAGAGTTGATATCATTGTATCTGAAAAAGCAACACAGAAGAGATCAAGTCTTTTGGAATTACTAG

Protein sequence

MAVANPHCFPTNLKQKRPILFQQRRPAGRASARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHMKIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY

Homology

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy Swiss-Prot
Match: Q9M2A1 (Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana OX=3702 GN=At3g42630 PE=2 SV=2)

HSP 1 Score: 304.7 bits (779), Expect = 9.5e-82
Identity = 142/214 (66.36%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  KME AYGR+K+   +IE+E I A+  AY+++RKFYRL EFL DVGL R+N+GN+LWN
Sbjct: 202 SLDKMEKAYGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWN 261

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
            +LLSYAA+FKMKSLQREF+ M++AGF+PD+TTFNIRA+AFSRM L WDLHL+LEHM+ +
Sbjct: 262 SVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRL 321

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
            I PDLV++GCVVDAY+D+RL RNLEFV ++MN D  P+ LTDP  FE LGKGDFH+SSE
Sbjct: 322 NIVPDLVTFGCVVDAYMDKRLARNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSE 381

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 245
           A ++F  +K WTYR+LI +YLKK+ RRDQ+FWNY
Sbjct: 382 AVLEFSPRKNWTYRKLIGVYLKKKLRRDQIFWNY 415

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy Swiss-Prot
Match: O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 31/101 (30.69%), Postives = 48/101 (47.52%), Query Frame = 0


Query: 89  WNLLLLSYAANFKMKSL---QREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLE 148
           W LL     ANFK ++L   +R F    + G+ PD+  FN     F+R ++       LE
Sbjct: 596 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILE 655

Query: 149 HMKHMKIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQ 187
            ++   + PDLV+Y  ++D YV R      E +L  +   Q
Sbjct: 656 SIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy Swiss-Prot
Match: B8Y6I0 (Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=4577 GN=PPR10 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.5e-05
Identity = 44/187 (23.53%), Postives = 82/187 (43.85%), Query Frame = 0


Query: 57  MAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWNLLLLSYAANFKMKSLQREFLAMVEAG 116
           +  A  + R+   +    ++V  R  N   +++N +L  YA N         F ++  +G
Sbjct: 567 LVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSG 626

Query: 117 FNPDITTFNIRAVAFSRMDLLWDLHLSLEHMK-HMKIEPDLVSYGCVVDAYVDRRLGRNL 176
            +PD+ T+N     +++    W+    L  +K    ++PD+VSY  V++ +  + L +  
Sbjct: 627 LSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEA 686

Query: 177 EFVLSKMNPD-QPPISLTDPFVFEAL--GKGDFHMSSEA-------FMQFQKQKKWTYRE 233
           + VLS+M  D   P ++T    +  L  G     M SEA            K  + TYR 
Sbjct: 687 QRVLSEMVADGMAPCAVT----YHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRR 746

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy Swiss-Prot
Match: Q8GW57 (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 4.7e-04
Identity = 34/159 (21.38%), Postives = 66/159 (41.51%), Query Frame = 0


Query: 84  VGNLLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLS 143
           +GN LWNL++L                     G  P++TTFN+R          WD +  
Sbjct: 230 IGNGLWNLMVLK--------------------GCKPNLTTFNVRIQFLVNRRRAWDANDL 289

Query: 144 LEHMKHMKIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPD--QPPISLTDPFVFEALG 203
           L  M  +++EPD ++Y  V+  +   R     E V + M+    +P + +    +     
Sbjct: 290 LLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCK 349

Query: 204 KGDFHMSSEAFMQFQKQKKWTYRELISLYLKKQHRRDQV 241
            G+F ++        ++K +   + + + LK   ++ Q+
Sbjct: 350 AGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQL 368

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy Swiss-Prot
Match: Q9CA58 (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana OX=3702 GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.0e-04
Identity = 24/78 (30.77%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 89  WNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMK 148
           +N LL       K + +   +  MVE G  P++ TFNI   +  R   L +    LE MK
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMK 558

Query: 149 HMKIEPDLVSYGCVVDAY 167
           +  + PD V++G ++D +
Sbjct: 559 NKSVNPDAVTFGTLIDGF 576

[Close]

BLAST of Cp4.1LG07g07710.1 vs. NCBI nr
Match: XP_023536679.1 (pentatricopeptide repeat-containing protein At3g42630 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421 bits (1082), Expect = 1.32e-144
Identity = 211/214 (98.60%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN
Sbjct: 214 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 273

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM
Sbjct: 274 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 333

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE
Sbjct: 334 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 393

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 394 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 427

[Close]

BLAST of Cp4.1LG07g07710.1 vs. NCBI nr
Match: KAG7020945.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 417 bits (1072), Expect = 4.22e-143
Identity = 208/214 (97.20%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN
Sbjct: 213 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 272

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRA+AFSRMDLLWDLHLSLEHMKH+
Sbjct: 273 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHV 332

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE
Sbjct: 333 KIEPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 392

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 393 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 426

[Close]

BLAST of Cp4.1LG07g07710.1 vs. NCBI nr
Match: KAG6586124.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 417 bits (1072), Expect = 4.22e-143
Identity = 208/214 (97.20%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN
Sbjct: 213 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 272

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRA+AFSRMDLLWDLHLSLEHMKH+
Sbjct: 273 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHV 332

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE
Sbjct: 333 KIEPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 392

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 393 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 426

[Close]

BLAST of Cp4.1LG07g07710.1 vs. NCBI nr
Match: XP_022937749.1 (pentatricopeptide repeat-containing protein At3g42630 [Cucurbita moschata])

HSP 1 Score: 416 bits (1070), Expect = 8.48e-143
Identity = 207/214 (96.73%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGN+LWN
Sbjct: 213 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWN 272

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRA+AFSRMDLLWDLHLSLEHMKH+
Sbjct: 273 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHV 332

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE
Sbjct: 333 KIEPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 392

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 393 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 426

[Close]

BLAST of Cp4.1LG07g07710.1 vs. NCBI nr
Match: XP_022966074.1 (pentatricopeptide repeat-containing protein At3g42630 [Cucurbita maxima])

HSP 1 Score: 407 bits (1045), Expect = 5.31e-139
Identity = 204/214 (95.33%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN
Sbjct: 213 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 272

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRA+AFSRMDLLWDLHLSLEHMKH+
Sbjct: 273 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHV 332

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYV+RRLGRNLEFVLSKMNPDQPPI  TD FVFEALGKGDFHMSSE
Sbjct: 333 KIEPDLVTYGCVVDAYVNRRLGRNLEFVLSKMNPDQPPILSTDLFVFEALGKGDFHMSSE 392

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 393 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 426

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy TrEMBL
Match: A0A6J1FC40 (pentatricopeptide repeat-containing protein At3g42630 OS=Cucurbita moschata OX=3662 GN=LOC111444056 PE=4 SV=1)

HSP 1 Score: 416 bits (1070), Expect = 4.11e-143
Identity = 207/214 (96.73%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGN+LWN
Sbjct: 213 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNMLWN 272

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRA+AFSRMDLLWDLHLSLEHMKH+
Sbjct: 273 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHV 332

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE
Sbjct: 333 KIEPDLVTYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 392

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 393 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 426

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy TrEMBL
Match: A0A6J1HSM5 (pentatricopeptide repeat-containing protein At3g42630 OS=Cucurbita maxima OX=3661 GN=LOC111465788 PE=4 SV=1)

HSP 1 Score: 407 bits (1045), Expect = 2.57e-139
Identity = 204/214 (95.33%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN
Sbjct: 213 SLMEMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 272

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRA+AFSRMDLLWDLHLSLEHMKH+
Sbjct: 273 LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAMAFSRMDLLWDLHLSLEHMKHV 332

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYV+RRLGRNLEFVLSKMNPDQPPI  TD FVFEALGKGDFHMSSE
Sbjct: 333 KIEPDLVTYGCVVDAYVNRRLGRNLEFVLSKMNPDQPPILSTDLFVFEALGKGDFHMSSE 392

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY
Sbjct: 393 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 426

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy TrEMBL
Match: A0A5D3CAE3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00220 PE=4 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 2.83e-136
Identity = 195/210 (92.86%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 35  METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWNLLLL 94
           METAYGRLKRSRFLIEK+GI+AMAFAYIR+RKFYRLGEFLRDVGL RKNVGNLLWNLLLL
Sbjct: 145 METAYGRLKRSRFLIEKKGIMAMAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLL 204

Query: 95  SYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHMKIEP 154
           SYAANFKMKSLQREFL MVEAGFNPD+TTFNIRA+AFSRMDLLWDLHLSLEHMKHM IEP
Sbjct: 205 SYAANFKMKSLQREFLQMVEAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEP 264

Query: 155 DLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQ 214
           DLV+YGCVVDAYVDRRLGRNLEF+LSKMNP QPP+SLTD FVFEALGKGDFHMSSEAFMQ
Sbjct: 265 DLVTYGCVVDAYVDRRLGRNLEFILSKMNPVQPPVSLTDSFVFEALGKGDFHMSSEAFMQ 324

Query: 215 FQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           F+KQKKWTYRELISLYLKKQHRR+QVFWNY
Sbjct: 325 FRKQKKWTYRELISLYLKKQHRRNQVFWNY 354

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy TrEMBL
Match: A0A1S3BP30 (pentatricopeptide repeat-containing protein At3g42630-like OS=Cucumis melo OX=3656 GN=LOC103492176 PE=4 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 3.12e-135
Identity = 195/210 (92.86%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 35  METAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWNLLLL 94
           METAYGRLKRSRFLIEK+GI+AMAFAYIR+RKFYRLGEFLRDVGL RKNVGNLLWNLLLL
Sbjct: 216 METAYGRLKRSRFLIEKKGIMAMAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLL 275

Query: 95  SYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHMKIEP 154
           SYAANFKMKSLQREFL MVEAGFNPD+TTFNIRA+AFSRMDLLWDLHLSLEHMKHM IEP
Sbjct: 276 SYAANFKMKSLQREFLQMVEAGFNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEP 335

Query: 155 DLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSEAFMQ 214
           DLV+YGCVVDAYVDRRLGRNLEF+LSKMNP QPP+SLTD FVFEALGKGDFHMSSEAFMQ
Sbjct: 336 DLVTYGCVVDAYVDRRLGRNLEFILSKMNPVQPPVSLTDSFVFEALGKGDFHMSSEAFMQ 395

Query: 215 FQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           F+KQKKWTYRELISLYLKKQHRR+QVFWNY
Sbjct: 396 FRKQKKWTYRELISLYLKKQHRRNQVFWNY 425

[Close]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy TrEMBL
Match: A0A6J1D9V6 (pentatricopeptide repeat-containing protein At3g42630 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018218 PE=4 SV=1)

HSP 1 Score: 389 bits (998), Expect = 4.22e-133
Identity = 190/214 (88.79%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  +METAYGRLKRSRFLIEKEGI+AMAFAY+R+RKFYRLGEFLRDVGL R+NVGNLLWN
Sbjct: 150 SLMEMETAYGRLKRSRFLIEKEGIMAMAFAYLRKRKFYRLGEFLRDVGLGRRNVGNLLWN 209

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
           LLLLSYAANFKMKSLQREFL MVEAGF+PD+TTFNIRA+AFSRMDLLWDLHLSLEHM+H+
Sbjct: 210 LLLLSYAANFKMKSLQREFLRMVEAGFHPDLTTFNIRALAFSRMDLLWDLHLSLEHMEHV 269

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
           KIEPDLV+YGCVVDAYVDRRLGRNL+F LSKMNPDQ P+SLT+ FVFEALGKGDFHMSSE
Sbjct: 270 KIEPDLVTYGCVVDAYVDRRLGRNLDFALSKMNPDQTPVSLTESFVFEALGKGDFHMSSE 329

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 244
           AFMQFQ+QKKWTYRELISLYLK+Q+RRDQVFWNY
Sbjct: 330 AFMQFQRQKKWTYRELISLYLKRQYRRDQVFWNY 363

[Close]

BLAST of Cp4.1LG07g07710.1 vs. TAIR 10
Match: AT3G42630.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 304.7 bits (779), Expect = 6.8e-83
Identity = 142/214 (66.36%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 31  SARKMETAYGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWN 90
           S  KME AYGR+K+   +IE+E I A+  AY+++RKFYRL EFL DVGL R+N+GN+LWN
Sbjct: 202 SLDKMEKAYGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWN 261

Query: 91  LLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHM 150
            +LLSYAA+FKMKSLQREF+ M++AGF+PD+TTFNIRA+AFSRM L WDLHL+LEHM+ +
Sbjct: 262 SVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRL 321

Query: 151 KIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQPPISLTDPFVFEALGKGDFHMSSE 210
            I PDLV++GCVVDAY+D+RL RNLEFV ++MN D  P+ LTDP  FE LGKGDFH+SSE
Sbjct: 322 NIVPDLVTFGCVVDAYMDKRLARNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSE 381

Query: 211 AFMQFQKQKKWTYRELISLYLKKQHRRDQVFWNY 245
           A ++F  +K WTYR+LI +YLKK+ RRDQ+FWNY
Sbjct: 382 AVLEFSPRKNWTYRKLIGVYLKKKLRRDQIFWNY 415

[Close]

BLAST of Cp4.1LG07g07710.1 vs. TAIR 10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-07
Identity = 31/101 (30.69%), Postives = 48/101 (47.52%), Query Frame = 0


Query: 89  WNLLLLSYAANFKMKSL---QREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLE 148
           W LL     ANFK ++L   +R F    + G+ PD+  FN     F+R ++       LE
Sbjct: 596 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILE 655

Query: 149 HMKHMKIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPDQ 187
            ++   + PDLV+Y  ++D YV R      E +L  +   Q
Sbjct: 656 SIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

[Close]

BLAST of Cp4.1LG07g07710.1 vs. TAIR 10
Match: AT1G80150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05
Identity = 34/159 (21.38%), Postives = 66/159 (41.51%), Query Frame = 0


Query: 84  VGNLLWNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLS 143
           +GN LWNL++L                     G  P++TTFN+R          WD +  
Sbjct: 230 IGNGLWNLMVLK--------------------GCKPNLTTFNVRIQFLVNRRRAWDANDL 289

Query: 144 LEHMKHMKIEPDLVSYGCVVDAYVDRRLGRNLEFVLSKMNPD--QPPISLTDPFVFEALG 203
           L  M  +++EPD ++Y  V+  +   R     E V + M+    +P + +    +     
Sbjct: 290 LLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCK 349

Query: 204 KGDFHMSSEAFMQFQKQKKWTYRELISLYLKKQHRRDQV 241
            G+F ++        ++K +   + + + LK   ++ Q+
Sbjct: 350 AGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQL 368

[Close]

BLAST of Cp4.1LG07g07710.1 vs. TAIR 10
Match: AT1G74580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-05
Identity = 24/78 (30.77%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 89  WNLLLLSYAANFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMK 148
           +N LL       K + +   +  MVE G  P++ TFNI   +  R   L +    LE MK
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMK 558

Query: 149 HMKIEPDLVSYGCVVDAY 167
           +  + PD V++G ++D +
Sbjct: 559 NKSVNPDAVTFGTLIDGF 576

[Close]

BLAST of Cp4.1LG07g07710.1 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 9.7e-05
Identity = 35/144 (24.31%), Postives = 58/144 (40.28%), Query Frame = 0


Query: 39  YGRLKRSRFLIEKEGILAMAFAYIRERKFYRLGEFLRDVGLRRKNVGNLLWNLLLLSYAA 98
           + R+KR R     E    M   Y +  K Y   +   ++   +       +  L+ ++A 
Sbjct: 252 FQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAR 311

Query: 99  NFKMKSLQREFLAMVEAGFNPDITTFNIRAVAFSRMDLLWDLHLSLEHMKHMKIEPDLVS 158
               +  +  F  + E G  PD+  +N    ++SR    +        M+HM  EPD  S
Sbjct: 312 EGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRAS 371

Query: 159 YGCVVDAYVDRRLGRNLEFVLSKM 183
           Y  +VDAY    L  + E V  +M
Sbjct: 372 YNIMVDAYGRAGLHSDAEAVFEEM 395

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g07710.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2A1	9.5e-82	66.36	Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana OX...	[more]
O64624	1.1e-05	30.69	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop...	[more]
B8Y6I0	2.5e-05	23.53	Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=457...	[more]
Q8GW57	4.7e-04	21.38	Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidop...	[more]
Q9CA58	8.0e-04	30.77	Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis th...	[more]

BLAST of Cp4.1LG07g07710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536679.1	1.32e-144	98.60	pentatricopeptide repeat-containing protein At3g42630 [Cucurbita pepo subsp. pep...	[more]
KAG7020945.1	4.22e-143	97.20	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6586124.1	4.22e-143	97.20	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022937749.1	8.48e-143	96.73	pentatricopeptide repeat-containing protein At3g42630 [Cucurbita moschata]	[more]
XP_022966074.1	5.31e-139	95.33	pentatricopeptide repeat-containing protein At3g42630 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG07g07710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC40	4.11e-143	96.73	pentatricopeptide repeat-containing protein At3g42630 OS=Cucurbita moschata OX=3...	[more]
A0A6J1HSM5	2.57e-139	95.33	pentatricopeptide repeat-containing protein At3g42630 OS=Cucurbita maxima OX=366...	[more]
A0A5D3CAE3	2.83e-136	92.86	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BP30	3.12e-135	92.86	pentatricopeptide repeat-containing protein At3g42630-like OS=Cucumis melo OX=36...	[more]
A0A6J1D9V6	4.22e-133	88.79	pentatricopeptide repeat-containing protein At3g42630 isoform X2 OS=Momordica ch...	[more]

BLAST of Cp4.1LG07g07710.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42630.1	6.8e-83	66.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G18940.1	7.9e-07	30.69	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80150.1	3.3e-05	21.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74580.1	5.7e-05	30.77	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G35130.1	9.7e-05	24.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 60..240 e-value: 7.1E-11 score: 44.0
None	No IPR available	PANTHER	PTHR47493:SF1	OS08G0520200 PROTEIN	coord: 31..244
None	No IPR available	PANTHER	PTHR47493	OS08G0520200 PROTEIN	coord: 31..244

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG07g07710	Cp4.1LG07g07710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g07710.1:exon:001	Cp4.1LG07g07710.1:exon:001	exon
Cp4.1LG07g07710.1:exon:002	Cp4.1LG07g07710.1:exon:002	exon
Cp4.1LG07g07710.1:exon:003	Cp4.1LG07g07710.1:exon:003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g07710.1:cds:001	Cp4.1LG07g07710.1:cds:001	CDS
Cp4.1LG07g07710.1:cds:002	Cp4.1LG07g07710.1:cds:002	CDS
Cp4.1LG07g07710.1:cds:003	Cp4.1LG07g07710.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g07710.1	Cp4.1LG07g07710.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding