Cp4.1LG06g06650.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06650.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA exonuclease 4
Location	Cp4.1LG06: 4144700 .. 4148786 (-)
Sequence length	1181
RNA-Seq Expression	Cp4.1LG06g06650.1
Synteny	Cp4.1LG06g06650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACGCACAAAGAATTACAAATTGGAACCCTTCTTCCTCTCTTTTCCCGTTTAGGGCCGCCGGGCGAGAAGACGGCCGAAGTCGACAGCTATCAGTAGTATGTGAATTGCGGAGTTGGCCTGCAAAGTGGAGCTTCAAGATTATGGAGTCTCAGCTCAAGAAGAGCGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAGTCATTCTTCTTCCCTCCATCCCTCCTTTTTCCAGTCTCTCTTTCTATCACTGATTTTCTTTGTTCTTCTGATCCTGCAGAAACTGAACCCTCATGGTTCAAAGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCGTCAAATACCCTTTTAGGTAACAGTTCTTCTACCCTGGGTTCATATTGCTTTCTTAGTTTCCCATTGATATTTATCTTGTTCGATGAACTCTGTGTTTTATGAAATTTATCTGGTTTCGTTAACTGAACCATGCTCTTGTTTGGTGAACTCTGTGTTACTTATTATCTTTACTTCTGTGTGATTGGCGACGTATGAGCTTCACTGATTCAAACACAGAAAGTGAAAACTGGGTTTTGCTTCAATCATCACTTTAGATGGTGTATGTTTGCGTTAAGCTTTTGATTTTTCTAATTATTTTATTGTGAAGTTCTTAGTTCACGAAATGTTTAGGCTTGTTTTTTGTTTCATTCTAATGAATCCACCTAGTTTTTGTTGTCATAATCAGTGTATTAAATTTCGATGGGTGACATTTTCATTGATATTTCCACATGTCCATGGATATTAACATAATGGGTGGATGAACATTTCCATTATATTGTGAAAAAATAGATGAAACATCAGATAAAAGTAACAAATTGTCACTAATGAGATCTCGACATTTTAAACTTTGATCATAATGTCATGATTTTGTTAACTTGTGCGACCTGGGTTTACAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGGTAATCTCTTAGAATTATTTTAGATTACTTGAAGGACATAGTAGTTGTTGTCTACTTACTGTAGATGCAAAGTGAAAAAAAAAAAAAAAAAGCTACTTGTATAATCACCAACTTCTGGCTAAAAAAGAAATTTAATTATAATTCAGTCCTCGACTATCATAAGTAGCAAGCAAGTTCATGGGACTAAATTATGAATTACCTTGGAATTAAACAAATCAAGTTCTGTGTGGCTTCTAGCCCCTTAGTATTGGCAAAATAATAATAAATCAAAGCTCGAATTTACTTGATTCCCTGCTTTTGTTTTCTTTGCCAAGAAAGAATCGAATTTAATACTCCAAATAACAACTCGTCGGGGTTAAAATCAGAAGAAACATCTAGAATAAATAGCTGGGTTCCTTTGGAAGTCTAGCTCAAAGAATTGACGACTAACTCACTTCAAACTTTTGCCAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTATTCAGTCTTTCATTCAATCCTTTTTGAATTTGATCACCTGTTATTCGTATCCATGTATTTGGTTTTTTAGCATACACGTGCAGAGGCAGACTCTTTATACCTCCTTCAATCAGGAGAGTGGATGGATTATTATTATTATTATTGTCTTTTTGGAGGGGTTGATAGTTAAAACTTTCATTGTCATATGTAGCTGCTTCTTGGGGCACCAAAGAGTGACGTTTAACTTTTATATATTATAGTTGCTAACAGTACTGCCAATTAATGACAGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGGTGACCTTAGTTTTCCTTATTTCTTGTAACATGTATATTTGGTTGTTTACATGTCTTAATACAATAGTACTTAGCTACCTAACATCTTTACCTAACAAAAAGCATTCTAGGGAAGAGATTGGAATCATCTGTTTCCTTGAAGAGTGTTTACAAGGATGCCTGATTTCTAGCTATGTACAATTATCTCTGAGAAAAGTAATGCTAGGTACTAAGAGGGAAGTGAAAGTGTGAAATCCCACATCGGTTGGAGAGGAGAACGAAACATTTTTTATAAAGGTGTGGAAACCTTTCTCTAGCAGACGCGTTTTAAAACCTTGAGGGAAAGCCCAGAAGGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCGGTTTCAGAAAGTTTGAGTAGGTAGATTAATGAAAAGTAAATTTAGGGTATTGTACTTTGCCCCTTGCTTTCAACAAGATGGCCTGGGATTTGGATTTTTTTAGTTCCTTGCGCTCAATCAGTCTTTCATCCTCTGATTTCCAATTGGGATTTACGTTTTTTACGTTTACTTTAGGTTTCGTTTCGTAATGCCATTGACGTAATTGATTTAATTTTTCAATTTCAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCGGAATTGATTAAGGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGTATCTGGATTAATGTAGTTTATGGTTTAAAGTATAAATCTGAACAGTTAAAGTAAAGTTCTTTTGACAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGTAATAATTTTGCTTCCCATTCAACTTTATAACTTCAACCTGTTCGATTCTACTTCGAAAAATATCCGTTCTCAAATGTTTGGTGACACAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTTAGTTTTCTGATCTTTTCACCCTTTATATTTTTAGCTCCTTTTGTTAAACCGCCAAAGAAATCTCTGGGTATTGATTAACGACATGAGTTGACGTAGTGGTCAATTACGGTCATAAAAATGAAAAGGCTTAGAAAGAATGGATTCAAGCCATGATGACAACCTACTTAGGATTTTATACCTGACTAGTTTTCTTGACAACCAAATATAATAGGGTTTAGCCGTTATCGTGAAACTAGTCGAAGTTTTTGCGAGCTATGTTACTTGTTTTCATCCTAAGATTCATGACCACCAAAAGCAAGGACTCCCATCTCGATGCAAATTACGTGCGATGTCTGACCTGATTTTGCAAATTCTGGGAATCTGTATATCGTTCAAGCTTCCTCTATTACTGTAACGGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGAGATTTCTCTTTCGGGCTTCCCCTCGAGGCTTTAAAACGCGTCTTTCAGAGTTACATAGCGGAACCTGTGCTCATCTAGATACTGTCTCTTTGGGCTTTCCCTTCCGGGCTTTCCCTCAAGGTTTTTGGGCTTTCCTGGGAAAGGTATCCACACCCTTATAAAGGGTGATTCGTTTTCCTCTCCAACCAACGTGGGATATCACAATCGATGCCAACAACTTGCAAGAAATTTTATTCCGATCGGCCTTTTAAATGTTGTACCGTTCTGTCATGGGACATTTTGTTTTGAAAGATCTGTGAAAATTTGGCTGAATTTTGTTCTGTAGGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATGAACGATCAAACTCCTAATATCTTAATCTGATGCAGATCTTACAAAAATGTGAAACTTGCTTGCTGTAGAATTGAGTAGATTATAGTCATTCTTTATTTTGAGTGAGACCATTGGCCTGTGTTCTTGGCCAAATTTTGATCTTCAAGCTCAAGAACTACTGGTTACTAATATTGTACGGATACGTCAACTTAATATCGTAAAGCAACTTTTAATCTCAAACACAAGCACGTGTCTCGTATTGATCTAA

mRNA sequence

TAAACGCACAAAGAATTACAAATTGGAACCCTTCTTCCTCTCTTTTCCCGTTTAGGGCCGCCGGGCGAGAAGACGGCCGAAGTCGACAGCTATCAGTAGTATGTGAATTGCGGAGTTGGCCTGCAAAGTGGAGCTTCAAGATTATGGAGTCTCAGCTCAAGAAGAGCGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAAGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCGTCAAATACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCGGAATTGATTAAGGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATGAACGATCAAACTCCTAATATCTTAATCTGATGCAGATCTTACAAAAATGTGAAACTTGCTTGCTGTAGAATTGAGTAGATTATAGTCATTCTTTATTTTGAGTGAGACCATTGGCCTGTGTTCTTGGCCAAATTTTGATCTTCAAGCTCAAGAACTACTGGTTACTAATATTGTACGGATACGTCAACTTAATATCGTAAAGCAACTTTTAATCTCAAACACAAGCACGTGTCTCGTATTGATCTAA

Coding sequence (CDS)

ATGGAGTCTCAGCTCAAGAAGAGCGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAAGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCGTCAAATACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCGGAATTGATTAAGGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATGA

Protein sequence

MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

Homology

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BLAST of Cp4.1LG06g06650.1 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-44
Identity = 93/196 (47.45%), Postives = 136/196 (69.39%), Query Frame = 0


Query: 64  KLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVD 123
           K+L+       LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D
Sbjct: 220 KILVKERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTD 279

Query: 124 FRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTS 183
           +RT +SGIRP D++K + F  VQK V+E+++GR LVGHA+ NDLK L L HPKK +RDT 
Sbjct: 280 YRTAVSGIRPEDVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQ 339

Query: 184 EYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 243
           +Y+ F++     R +L+ L  ++L V++Q GEHC V+DA++AM LY  + K WE ++KA+
Sbjct: 340 KYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWEVAIKAK 399

Query: 244 VK--LKLKQKKRKPRK 255
               + + +K + P+K
Sbjct: 400 YTGVMPVDRKSKGPQK 415

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 3.2e-43
Identity = 85/167 (50.90%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 75  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPC 134
           LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299

Query: 135 DLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFF--QRGG 194
           +L++ ++   VQK VAE++KGRILVGHAL NDLK L L HPKK +RDT +Y+ F  Q   
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKS 359

Query: 195 CRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK 239
            R +LR L+ ++LG+++Q  EHC ++DA++AM LY    KEWE   +
Sbjct: 360 GRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMAR 406

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 4.2e-43
Identity = 83/166 (50.00%), Postives = 123/166 (74.10%), Query Frame = 0


Query: 75  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPC 134
           LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309

Query: 135 DLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ---RG 194
           +L++ ++F  V+K VAE++KGRILVGHAL NDLK L L HPKK +RDT +++ F+   + 
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369

Query: 195 GCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKS 237
           G R +L+ L+ ++LG+ +Q  EHC ++DA++AM LY    +EWE S
Sbjct: 370 G-RPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESS 414

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy Swiss-Prot
Match: Q6DEW6 (RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.5e-43
Identity = 94/202 (46.53%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 56  EESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFV 115
           E +  + +K+L+       LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V
Sbjct: 206 ETAPPTAEKVLVKEKAFEGLTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYV 265

Query: 116 RPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHP 175
           RP ERV D+RT +SGIRP D++  + F  VQ  VAE+++GR LVGHA+ NDLK L L HP
Sbjct: 266 RPTERVTDYRTAVSGIRPDDIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHP 325

Query: 176 KKDVRDTSEYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKE 235
           KK +RDT +Y+ F+      R +L+ L  ++L V++Q GEHC V+DA++AM LY  + K 
Sbjct: 326 KKAIRDTQKYKPFKEKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKC 385

Query: 236 WEKSVKAEVKLKLKQKKRKPRK 255
           WE ++KA+       K + P+K
Sbjct: 386 WEAAIKAKYAGVTAAKAKGPQK 407

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.3e-40
Identity = 84/161 (52.17%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 79  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRK 138
           +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  ++ 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 139 AKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQR---GGCRR 198
           A  F   QK+ A++++GRILVGHAL++DL+AL+LSHPK  +RDTS +  F++    G   
Sbjct: 182 AITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTP 241

Query: 199 ALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           +L+ L  EVL + IQ GEH  VEDAR+ MLLY+K+  E+EK
Sbjct: 242 SLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 282

[Close]

BLAST of Cp4.1LG06g06650.1 vs. NCBI nr
Match: XP_023535411.1 (RNA exonuclease 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 507 bits (1306), Expect = 6.77e-181
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE
Sbjct: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
           VKLKLKQKKRKPRKKSKDGGGVE
Sbjct: 241 VKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. NCBI nr
Match: XP_022935723.1 (RNA exonuclease 4 [Cucurbita moschata])

HSP 1 Score: 505 bits (1300), Expect = 5.56e-180
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASS TLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE
Sbjct: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
           VKLKLKQKKRKPRKKSKDGGGVE
Sbjct: 241 VKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. NCBI nr
Match: KAG6591931.1 (RNA exonuclease 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024804.1 RNA exonuclease 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 502 bits (1292), Expect = 9.22e-179
Identity = 260/263 (98.86%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           MESQLKK AKPKLLNPNWALLQQKLNPHGS+RSSSVPKSEASS TLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE
Sbjct: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
           VKLKLKQKKRKPRKKSKDGGGVE
Sbjct: 241 VKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. NCBI nr
Match: XP_022976561.1 (RNA exonuclease 4 [Cucurbita maxima])

HSP 1 Score: 498 bits (1281), Expect = 4.38e-177
Identity = 258/263 (98.10%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           MESQLKKSAK KLLNPNWALLQQKLNPHGSKRSS+VPKSEASS TLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKSKLLNPNWALLQQKLNPHGSKRSSTVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIY+EFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYNEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQRGGCRR+LRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE
Sbjct: 181 TSEYQFFQRGGCRRSLRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
           VKLKLKQKKRKPRKKSKDGGGVE
Sbjct: 241 VKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. NCBI nr
Match: XP_004146040.1 (RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 454 bits (1167), Expect = 1.04e-159
Identity = 233/263 (88.59%), Postives = 247/263 (93.92%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           M+SQLKK+ KPKLLNPNWALLQQKLNPHGS  S++V KSEASS TLLGKRK+RSD ES+H
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           S K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIERV
Sbjct: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRD
Sbjct: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQ+ GC+RALRHLAAE L VEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE
Sbjct: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
            KLKLKQKKRKPRKKSKDGGG E
Sbjct: 241 QKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy TrEMBL
Match: A0A6J1FBB2 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1)

HSP 1 Score: 505 bits (1300), Expect = 2.69e-180
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASS TLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE
Sbjct: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
           VKLKLKQKKRKPRKKSKDGGGVE
Sbjct: 241 VKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy TrEMBL
Match: A0A6J1IH78 (RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111476919 PE=3 SV=1)

HSP 1 Score: 498 bits (1281), Expect = 2.12e-177
Identity = 258/263 (98.10%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           MESQLKKSAK KLLNPNWALLQQKLNPHGSKRSS+VPKSEASS TLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKSKLLNPNWALLQQKLNPHGSKRSSTVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIY+EFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYNEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQRGGCRR+LRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE
Sbjct: 181 TSEYQFFQRGGCRRSLRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
           VKLKLKQKKRKPRKKSKDGGGVE
Sbjct: 241 VKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy TrEMBL
Match: A0A0A0KZK3 (RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1)

HSP 1 Score: 454 bits (1167), Expect = 5.02e-160
Identity = 233/263 (88.59%), Postives = 247/263 (93.92%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60
           M+SQLKK+ KPKLLNPNWALLQQKLNPHGS  S++V KSEASS TLLGKRK+RSD ES+H
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           S K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIERV
Sbjct: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRD
Sbjct: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAE 240
           TSEYQFFQ+ GC+RALRHLAAE L VEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE
Sbjct: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240

Query: 241 VKLKLKQKKRKPRKKSKDGGGVE 263
            KLKLKQKKRKPRKKSKDGGG E
Sbjct: 241 QKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy TrEMBL
Match: E5GBF8 (RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 452 bits (1162), Expect = 3.12e-159
Identity = 234/265 (88.30%), Postives = 247/265 (93.21%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRS--SSVPKSEASSNTLLGKRKDRSDEES 60
           M SQLKK+ KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASS TLLGKRK+RSD ES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120
           +HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK 240
           RDTSEYQFFQ+ GC+RALRHLAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEVKLKLKQKKRKPRKKSKDGGGVE 263
           AE KLKLKQKKRKPRKKSKDGGG E
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy TrEMBL
Match: A0A1S3CJW0 (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1)

HSP 1 Score: 452 bits (1162), Expect = 3.12e-159
Identity = 234/265 (88.30%), Postives = 247/265 (93.21%), Query Frame = 0


Query: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRS--SSVPKSEASSNTLLGKRKDRSDEES 60
           M SQLKK+ KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASS TLLGKRK+RSD ES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120
           +HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK 240
           RDTSEYQFFQ+ GC+RALRHLAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEVKLKLKQKKRKPRKKSKDGGGVE 263
           AE KLKLKQKKRKPRKKSKDGGG E
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of Cp4.1LG06g06650.1 vs. TAIR 10
Match: AT3G15080.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 337.8 bits (865), Expect = 7.8e-93
Identity = 178/267 (66.67%), Postives = 212/267 (79.40%), Query Frame = 0


Query: 1   MESQLKKSAKPKL------LNPNWALLQQKL--NPHGSKRSSSVPKSEASSNTLLGKRKD 60
           M S LK+  K K+      LNPNW+LLQQKL  + HG+ R SS P++ +S   +LGKRK+
Sbjct: 1   MSSDLKRKPKKKITPKPVQLNPNWSLLQQKLKSDSHGNTRKSSNPENPSS---ILGKRKE 60

Query: 61  RSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDE 120
           R D E D      L PVNDD SLTD VAMDCEMVGV QG KSALGRVT+VNKWGNV+YDE
Sbjct: 61  RPDSEVDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDE 120

Query: 121 FVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLS 180
           FVRP+E VVDFRT ISGIRP DLRKAKDF   Q +VAELIKG+ILVGHAL NDLKALLL+
Sbjct: 121 FVRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLT 180

Query: 181 HPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKE 240
           HPKKD+RDT EYQ F +G  R++L+HLA+E+LG +IQNGEHCP++DAR+AM+LYQK  KE
Sbjct: 181 HPKKDIRDTGEYQPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKE 240

Query: 241 WEKSVKAEVKLKLKQKKRKPRKKSKDG 260
           WEK+VK + ++ LKQKKRKP+KK+K G
Sbjct: 241 WEKTVKDQTRMWLKQKKRKPKKKAKYG 264

[Close]

BLAST of Cp4.1LG06g06650.1 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-20
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 78  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLR 137
           VVA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R E +GIRP +LR
Sbjct: 135 VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLR 194

Query: 138 KAKDFPTVQKRVAELI--------------KGRILVGHALRNDLKALLLSHPKKDVRDTS 197
            A     VQ+++ E +              K RILVGH L +DL  L L +P   +RDT+
Sbjct: 195 DAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTA 254

Query: 198 EY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK 229
           +Y    +      +L++L    LG ++  G   P ED  + M LY +
Sbjct: 255 KYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTR 301

[Close]

BLAST of Cp4.1LG06g06650.1 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-19
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 78  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLR 137
           VVA+ C+MVG G  G+     RV + ++  NV++  +V+P   V ++R E++GIRP +LR
Sbjct: 126 VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENLR 185

Query: 138 KAKDFPTVQKRVAELI--------------KGRILVGHALRNDLKALLLSHPKKDVRDTS 197
            A      Q++V E +              K RILVGH L N L +L L +    +RDT+
Sbjct: 186 DAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDTA 245

Query: 198 EY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK 229
           EY    +      +L++L    LG +I  G   P ED  + M LY +
Sbjct: 246 EYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTR 292

[Close]

BLAST of Cp4.1LG06g06650.1 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-18
Identity = 62/173 (35.84%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 79  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRK 138
           +A+DCEMVG G  G       V +V+   NVI+   V+P+  V D+R EI+G+   DL+ 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 139 AKDFPTVQKRVAELIKG--------RILVGHALRNDLKALLLSHPKKDVRDTSEY-QFFQ 198
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    +
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 199 RGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK-KSKEWEKSVKAE 241
                ++L++L    LG +IQ G+H   ED  SAM LY++ + +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of Cp4.1LG06g06650.1 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-18
Identity = 62/173 (35.84%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 79  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRK 138
           +A+DCEMVG G  G       V +V+   NVI+   V+P+  V D+R EI+G+   DL+ 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 139 AKDFPTVQKRVAELIKG--------RILVGHALRNDLKALLLSHPKKDVRDTSEY-QFFQ 198
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    +
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 199 RGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK-KSKEWEKSVKAE 241
                ++L++L    LG +IQ G+H   ED  SAM LY++ + +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06650.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91560	3.8e-44	47.45	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
Q9GZR2	3.2e-43	50.90	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6PAQ4	4.2e-43	50.00	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]
Q6DEW6	5.5e-43	46.53	RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1	[more]
Q08237	3.3e-40	52.17	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]

BLAST of Cp4.1LG06g06650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535411.1	6.77e-181	100.00	RNA exonuclease 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022935723.1	5.56e-180	99.62	RNA exonuclease 4 [Cucurbita moschata]	[more]
KAG6591931.1	9.22e-179	98.86	RNA exonuclease 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024804.1...	[more]
XP_022976561.1	4.38e-177	98.10	RNA exonuclease 4 [Cucurbita maxima]	[more]
XP_004146040.1	1.04e-159	88.59	RNA exonuclease 4 [Cucumis sativus]	[more]

BLAST of Cp4.1LG06g06650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBB2	2.69e-180	99.62	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1	[more]
A0A6J1IH78	2.12e-177	98.10	RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111476919 PE=3 SV=1	[more]
A0A0A0KZK3	5.02e-160	88.59	RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1	[more]
E5GBF8	3.12e-159	88.30	RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3CJW0	3.12e-159	88.30	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1	[more]

BLAST of Cp4.1LG06g06650.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15080.1	7.8e-93	66.67	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G27970.1	5.2e-20	34.13	Exonuclease family protein	[more]
AT5G40310.1	4.4e-19	34.13	Exonuclease family protein	[more]
AT2G48100.1	3.7e-18	35.84	Exonuclease family protein	[more]
AT2G48100.2	3.7e-18	35.84	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 77..235 e-value: 1.5E-38 score: 144.1
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 79..226 e-value: 6.1E-14 score: 52.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 74..253 e-value: 1.2E-56 score: 193.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..263
None	No IPR available	PANTHER	PTHR12801:SF135	RNA EXONUCLEASE 4	coord: 45..254
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 45..254
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 79..227 e-value: 4.88311E-92 score: 266.304
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 78..232

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG06g06650	Cp4.1LG06g06650	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06650.1:three_prime_utr:001	Cp4.1LG06g06650.1:three_prime_utr:001	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06650.1:exon:009	Cp4.1LG06g06650.1:exon:009	exon
Cp4.1LG06g06650.1:exon:008	Cp4.1LG06g06650.1:exon:008	exon
Cp4.1LG06g06650.1:exon:007	Cp4.1LG06g06650.1:exon:007	exon
Cp4.1LG06g06650.1:exon:006	Cp4.1LG06g06650.1:exon:006	exon
Cp4.1LG06g06650.1:exon:005	Cp4.1LG06g06650.1:exon:005	exon
Cp4.1LG06g06650.1:exon:004	Cp4.1LG06g06650.1:exon:004	exon
Cp4.1LG06g06650.1:exon:003	Cp4.1LG06g06650.1:exon:003	exon
Cp4.1LG06g06650.1:exon:002	Cp4.1LG06g06650.1:exon:002	exon
Cp4.1LG06g06650.1:exon:001	Cp4.1LG06g06650.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06650.1:cds:001	Cp4.1LG06g06650.1:cds:001	CDS
Cp4.1LG06g06650.1:cds:002	Cp4.1LG06g06650.1:cds:002	CDS
Cp4.1LG06g06650.1:cds:003	Cp4.1LG06g06650.1:cds:003	CDS
Cp4.1LG06g06650.1:cds:004	Cp4.1LG06g06650.1:cds:004	CDS
Cp4.1LG06g06650.1:cds:005	Cp4.1LG06g06650.1:cds:005	CDS
Cp4.1LG06g06650.1:cds:006	Cp4.1LG06g06650.1:cds:006	CDS
Cp4.1LG06g06650.1:cds:007	Cp4.1LG06g06650.1:cds:007	CDS
Cp4.1LG06g06650.1:cds:008	Cp4.1LG06g06650.1:cds:008	CDS
Cp4.1LG06g06650.1:cds:009	Cp4.1LG06g06650.1:cds:009	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06650.1:five_prime_utr:001	Cp4.1LG06g06650.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06650.1	Cp4.1LG06g06650.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity