Cp4.1LG05g05270.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g05270.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	Cp4.1LG05: 3135461 .. 3136528 (+)
Sequence length	765
RNA-Seq Expression	Cp4.1LG05g05270.1
Synteny	Cp4.1LG05g05270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGGTAACGAGTGGTCACAATAAGTGCTAAACCAATCACTACCACCCACTCTCTTTAATTCCCATTCACCATAAAAACCCACTGCCCCTTCTCCCCGCCCACTCCGCCCAATTCCCAGTGCCACCGCTCCCTCCAAAGCAATCATGACCTCCAAATCGCCTTCAACTAATTTGGCTATGTCATGCGCCCTGGCGCTGCTCTTCCTGGGCTTGGTGACCTCAAACGTAGACCAGGACAGAGCCGAGTGCACAGACCAAGTGGTCGGGCTAGCGACTTGCCTGCCGTACGTGGGCGGCGAGGCGAAAGCGCCTACACCCGACTGCTGCAGCGGCCTCAGGCTTGTGGTTCAAAAGAGCATGAAATGTCTCTGCGTGCTGATAAAGGACCGTAATGACCCCACCCTGGGCCTCAAAGTGAACCTTACACTCGCTCTTGGACTACCTAATGTATGCCACACCCCGGCCAATATAACAGATTGTATCGGTAATTGATTCGTTCGTGATTCATATGTCGTATCATTATTAATGTAATCTGTGTGACGTTAATTGTTGGAGTATGTGAACTACAGGGCTTCTCCATCTGCCGCCCAACTCCGCAGAAGCCAAGGATTTTTTGGGGCTAAGCGCCAAGGGAGCAAACGTTACATCTGCTCCCACGGGTAATGATACTTATTAATTTCTTTTAGAGTAAGAACAGTAATTAGATGTATTTCTATTTGATCTTGACATTAATTAATCGTTAACGTACGCTAATTAGTCTAACAAAACATGTTTTAATTTGTTGCAGCGAGCAGTAATCCCACAGAAAAGCCTGACGTAAAAAATGACGGTGGAATGAGAAAACAACGGATGGGGGTCGAGATTTTCATTTCATGTATTGTTCTATTCACTTCTATTTGGTAGTGTACCATTTTTAGTTCTCCCAAACTCTCCATAAATAAAATAAATATTTAATTAATTAATCATGTGATAACGGGATTATTATCGATATAGTCCATATTGGTCGCTCGTTTTTTTGATATTGTTATAGAATAAATGTTTTTTAATTTTATCAAAAAATTTGAAGA

mRNA sequence

TGAAGGTAACGAGTGGTCACAATAAGTGCTAAACCAATCACTACCACCCACTCTCTTTAATTCCCATTCACCATAAAAACCCACTGCCCCTTCTCCCCGCCCACTCCGCCCAATTCCCAGTGCCACCGCTCCCTCCAAAGCAATCATGACCTCCAAATCGCCTTCAACTAATTTGGCTATGTCATGCGCCCTGGCGCTGCTCTTCCTGGGCTTGGTGACCTCAAACGTAGACCAGGACAGAGCCGAGTGCACAGACCAAGTGGTCGGGCTAGCGACTTGCCTGCCGTACGTGGGCGGCGAGGCGAAAGCGCCTACACCCGACTGCTGCAGCGGCCTCAGGCTTGTGGTTCAAAAGAGCATGAAATGTCTCTGCGTGCTGATAAAGGACCGTAATGACCCCACCCTGGGCCTCAAAGTGAACCTTACACTCGCTCTTGGACTACCTAATGTATGCCACACCCCGGCCAATATAACAGATTGTATCGCGAGCAGTAATCCCACAGAAAAGCCTGACGTAAAAAATGACGGTGGAATGAGAAAACAACGGATGGGGGTCGAGATTTTCATTTCATGTATTGTTCTATTCACTTCTATTTGGTAGTGTACCATTTTTAGTTCTCCCAAACTCTCCATAAATAAAATAAATATTTAATTAATTAATCATGTGATAACGGGATTATTATCGATATAGTCCATATTGGTCGCTCGTTTTTTTGATATTGTTATAGAATAAATGTTTTTTAATTTTATCAAAAAATTTGAAGA

Coding sequence (CDS)

ATGACCTCCAAATCGCCTTCAACTAATTTGGCTATGTCATGCGCCCTGGCGCTGCTCTTCCTGGGCTTGGTGACCTCAAACGTAGACCAGGACAGAGCCGAGTGCACAGACCAAGTGGTCGGGCTAGCGACTTGCCTGCCGTACGTGGGCGGCGAGGCGAAAGCGCCTACACCCGACTGCTGCAGCGGCCTCAGGCTTGTGGTTCAAAAGAGCATGAAATGTCTCTGCGTGCTGATAAAGGACCGTAATGACCCCACCCTGGGCCTCAAAGTGAACCTTACACTCGCTCTTGGACTACCTAATGTATGCCACACCCCGGCCAATATAACAGATTGTATCGCGAGCAGTAATCCCACAGAAAAGCCTGACGTAAAAAATGACGGTGGAATGAGAAAACAACGGATGGGGGTCGAGATTTTCATTTCATGTATTGTTCTATTCACTTCTATTTGGTAG

Protein sequence

MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSIW

Homology

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy Swiss-Prot
Match: O64865 (Non-specific lipid transfer protein GPI-anchored 14 OS=Arabidopsis thaliana OX=3702 GN=LTPG14 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-31
Identity = 60/106 (56.60%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 12  MSCALALLFLGLVTSNVD---QDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVV 71
           M+ A+AL+ + +V +  D   +D+ ECT+Q+VG+ATCLPYV G+AK+PTPDCCSGL+ V+
Sbjct: 9   MATAIALIVVAMVVAAADDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVL 68

Query: 72  QKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIA 115
             + KCLCV+I+DRNDP LGL++N++LAL LP+VCH  A++T C A
Sbjct: 69  NSNKKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPA 114

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy Swiss-Prot
Match: O64864 (Non-specific lipid transfer protein GPI-anchored 13 OS=Arabidopsis thaliana OX=3702 GN=LTPG13 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-30
Identity = 60/107 (56.07%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 12  MSCALALLFLGLVT----SNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLV 71
           M+ A+AL+ + +V     ++  +D+ ECT Q+VG+ATCLPYV G+AK+PTPDCCSGL+ V
Sbjct: 9   MATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQV 68

Query: 72  VQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIA 115
           +   MKCLC++I++RNDP LGL+VN++LAL LP+VCH  A+IT C A
Sbjct: 69  INSDMKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPA 115

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy Swiss-Prot
Match: F4I082 (Non-specific lipid transfer protein GPI-anchored 6 OS=Arabidopsis thaliana OX=3702 GN=LTPG6 PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 10  LAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVVQ 69
           L ++  +  + LG   S++ QDR ECT+Q++ L+TC+PYVGG+AKAPT DCC+G   V++
Sbjct: 8   LFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQVIR 67

Query: 70  KSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCH-TPANITDCIA-------------- 129
           KS KC+C+L++D++DP LG+K+N TLA  LP+ CH T  NITDCI+              
Sbjct: 68  KSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPRNSTLAKEF 127

Query: 130 -----------SSNPTE----------KPDVKNDGGMRKQRMGVEIFISCIV 146
                      S++PT+             VK++G   K  +GVE+ I  +V
Sbjct: 128 ENLGRIEDNYNSTSPTQIHKDGTGGGKAEPVKSNGWKEKSWLGVELLIYLLV 179

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy Swiss-Prot
Match: Q9M2G1 (Non-specific lipid transfer protein GPI-anchored 22 OS=Arabidopsis thaliana OX=3702 GN=LTPG22 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 10  LAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVVQ 69
           LA+   +A++FLG V S + QD   C D +  L +CLP+V  +AKAP   CCS L++ + 
Sbjct: 14  LALCITVAVMFLG-VRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKID 73

Query: 70  K--SMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDC 113
           K  + KCLC L+KDR+DP LG KV+   A+ LP+ CH PANI+ C
Sbjct: 74  KGQTRKCLCTLVKDRDDPGLGFKVDANRAMSLPSACHVPANISQC 117

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy Swiss-Prot
Match: Q9C9B1 (Non-specific lipid transfer protein GPI-anchored 10 OS=Arabidopsis thaliana OX=3702 GN=LTPG10 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 10  LAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVVQ 69
           + +  +L+  FL +V + V    A C  +++ LA C P+V G A+ P   CC  L  +  
Sbjct: 8   ITLLISLSAFFLRMVLAQVP---ATCASRLLSLAPCGPFVQGFAQLPAQPCCDSLNQIYS 67

Query: 70  KSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIASSNPTEKP 123
           +   CLC+ + + +  +    +N TLAL LP +C+ PAN + C +SS P E P
Sbjct: 68  QEATCLCLFLNNTSTLSPAFPINQTLALQLPPLCNIPANSSTC-SSSFPGEAP 116

[Close]

BLAST of Cp4.1LG05g05270.1 vs. NCBI nr
Match: XP_023534119.1 (protein YLS3-like [Cucurbita pepo subsp. pepo] >KAG6605872.1 Protein YLS3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035823.1 Protein YLS3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296 bits (758), Expect = 1.31e-100
Identity = 151/181 (83.43%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI------- 120
           CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI       
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIGLLHLPP 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI 151
                                  ASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI
Sbjct: 121 NSAEAKDFLGLSAKGANVTSAPTASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. NCBI nr
Match: XP_022958128.1 (protein YLS3-like [Cucurbita moschata])

HSP 1 Score: 290 bits (741), Expect = 5.12e-98
Identity = 148/181 (81.77%), Postives = 149/181 (82.32%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI------- 120
           CSGLRLVVQKSMKCLCVLIKDRNDPTL LKVNLTLALGLPNVCHTPANITDCI       
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLALKVNLTLALGLPNVCHTPANITDCIGLLHLPP 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI 151
                                  ASSNPTEKPDVKNDGGMRKQ +GVEIFISCIVLFTSI
Sbjct: 121 NSAEAKDFLGLSAKGANVTSAPAASSNPTEKPDVKNDGGMRKQWLGVEIFISCIVLFTSI 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. NCBI nr
Match: XP_022995769.1 (protein YLS3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 288 bits (738), Expect = 1.47e-97
Identity = 146/181 (80.66%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI------- 120
           CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPAN+TDCI       
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANVTDCIGLLHLPP 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI 151
                                  ASSNPT+KP+VKNDGGMRKQ +GVEIFISCIVLFTSI
Sbjct: 121 NSAEAKDFLGLSAKGANVTSAPAASSNPTQKPEVKNDGGMRKQWVGVEIFISCIVLFTSI 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. NCBI nr
Match: XP_022995770.1 (protein YLS3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 234 bits (596), Expect = 2.10e-76
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI 113
           CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPAN+TDCI
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANVTDCI 113

[Close]

BLAST of Cp4.1LG05g05270.1 vs. NCBI nr
Match: XP_022986687.1 (protein YLS3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 209 bits (531), Expect = 5.26e-66
Identity = 109/184 (59.24%), Postives = 128/184 (69.57%), Query Frame = 0


Query: 1   MTSKSPSTNLA--MSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTP 60
           M SKS STN    +SCA+ALLF+G V+SNVDQDRAEC DQVVGLATCLPYVGGEA+APTP
Sbjct: 1   MASKSSSTNYTALISCAIALLFVGFVSSNVDQDRAECADQVVGLATCLPYVGGEARAPTP 60

Query: 61  DCCSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI----- 120
           DCCSGL++V++KS KCLCVLIKDRNDP+LGLKVNLTLALGLPN CH PANI DCI     
Sbjct: 61  DCCSGLKVVLEKSKKCLCVLIKDRNDPSLGLKVNLTLALGLPNACHAPANIQDCIGLLHL 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCI---VLF 151
                                  A  N T+ P ++   GMR Q +G E+FI+ +   +LF
Sbjct: 121 SPNSQDAKDFMGSKGANTTAAPAAPGNSTQTP-MEKGSGMRNQWLGAEMFIAFLTSSLLF 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy TrEMBL
Match: A0A6J1H2A2 (protein YLS3-like OS=Cucurbita moschata OX=3662 GN=LOC111459449 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 2.48e-98
Identity = 148/181 (81.77%), Postives = 149/181 (82.32%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI------- 120
           CSGLRLVVQKSMKCLCVLIKDRNDPTL LKVNLTLALGLPNVCHTPANITDCI       
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLALKVNLTLALGLPNVCHTPANITDCIGLLHLPP 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI 151
                                  ASSNPTEKPDVKNDGGMRKQ +GVEIFISCIVLFTSI
Sbjct: 121 NSAEAKDFLGLSAKGANVTSAPAASSNPTEKPDVKNDGGMRKQWLGVEIFISCIVLFTSI 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy TrEMBL
Match: A0A6J1K6V2 (protein YLS3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491205 PE=4 SV=1)

HSP 1 Score: 288 bits (738), Expect = 7.11e-98
Identity = 146/181 (80.66%), Postives = 150/181 (82.87%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI------- 120
           CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPAN+TDCI       
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANVTDCIGLLHLPP 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCIVLFTSI 151
                                  ASSNPT+KP+VKNDGGMRKQ +GVEIFISCIVLFTSI
Sbjct: 121 NSAEAKDFLGLSAKGANVTSAPAASSNPTQKPEVKNDGGMRKQWVGVEIFISCIVLFTSI 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy TrEMBL
Match: A0A6J1K4W0 (protein YLS3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491205 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 1.02e-76
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60
           MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC
Sbjct: 1   MTSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDC 60

Query: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI 113
           CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPAN+TDCI
Sbjct: 61  CSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANVTDCI 113

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy TrEMBL
Match: A0A6J1J894 (protein YLS3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484364 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 2.55e-66
Identity = 109/184 (59.24%), Postives = 128/184 (69.57%), Query Frame = 0


Query: 1   MTSKSPSTNLA--MSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTP 60
           M SKS STN    +SCA+ALLF+G V+SNVDQDRAEC DQVVGLATCLPYVGGEA+APTP
Sbjct: 1   MASKSSSTNYTALISCAIALLFVGFVSSNVDQDRAECADQVVGLATCLPYVGGEARAPTP 60

Query: 61  DCCSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI----- 120
           DCCSGL++V++KS KCLCVLIKDRNDP+LGLKVNLTLALGLPN CH PANI DCI     
Sbjct: 61  DCCSGLKVVLEKSKKCLCVLIKDRNDPSLGLKVNLTLALGLPNACHAPANIQDCIGLLHL 120

Query: 121 -----------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCI---VLF 151
                                  A  N T+ P ++   GMR Q +G E+FI+ +   +LF
Sbjct: 121 SPNSQDAKDFMGSKGANTTAAPAAPGNSTQTP-MEKGSGMRNQWLGAEMFIAFLTSSLLF 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy TrEMBL
Match: A0A6J1JBX4 (protein YLS3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484364 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 5.48e-66
Identity = 109/186 (58.60%), Postives = 128/186 (68.82%), Query Frame = 0


Query: 1   MTSKSPSTNLA--MSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTP 60
           M SKS STN    +SCA+ALLF+G V+SNVDQDRAEC DQVVGLATCLPYVGGEA+APTP
Sbjct: 1   MASKSSSTNYTALISCAIALLFVGFVSSNVDQDRAECADQVVGLATCLPYVGGEARAPTP 60

Query: 61  DCCSGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCI----- 120
           DCCSGL++V++KS KCLCVLIKDRNDP+LGLKVNLTLALGLPN CH PANI DCI     
Sbjct: 61  DCCSGLKVVLEKSKKCLCVLIKDRNDPSLGLKVNLTLALGLPNACHAPANIQDCIGLLHL 120

Query: 121 -------------------------ASSNPTEKPDVKNDGGMRKQRMGVEIFISCI---V 151
                                    A  N T+ P ++   GMR Q +G E+FI+ +   +
Sbjct: 121 SPNSQDAKDFMGSKGANTTAAPATAAPGNSTQTP-MEKGSGMRNQWLGAEMFIAFLTSSL 180

[Close]

BLAST of Cp4.1LG05g05270.1 vs. TAIR 10
Match: AT2G44300.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32
Identity = 60/106 (56.60%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 12  MSCALALLFLGLVTSNVD---QDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVV 71
           M+ A+AL+ + +V +  D   +D+ ECT+Q+VG+ATCLPYV G+AK+PTPDCCSGL+ V+
Sbjct: 9   MATAIALIVVAMVVAAADDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVL 68

Query: 72  QKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIA 115
             + KCLCV+I+DRNDP LGL++N++LAL LP+VCH  A++T C A
Sbjct: 69  NSNKKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPA 114

[Close]

BLAST of Cp4.1LG05g05270.1 vs. TAIR 10
Match: AT1G55260.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 69/177 (38.98%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 2   TSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCC 61
           T +  +  L ++  +  + LG   S++ QDR ECT+Q++ L+TC+PYVGG+AKAPT DCC
Sbjct: 43  TMEKSTRTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCC 102

Query: 62  SGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCH-TPANITDCIA------ 121
           +G   V++KS KC+C+L++D++DP LG+K+N TLA  LP+ CH T  NITDCI+      
Sbjct: 103 AGFGQVIRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPR 162

Query: 122 -------------------SSNPTE-------KPDVKNDGGMRKQRMGVEIFISCIV 146
                              S++PT+          VK++G   K  +GVE+ I  +V
Sbjct: 163 NSTLAKEFENLGRIEDNYNSTSPTQIHKGGGKAEPVKSNGWKEKSWLGVELLIYLLV 219

[Close]

BLAST of Cp4.1LG05g05270.1 vs. TAIR 10
Match: AT2G44290.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 60/107 (56.07%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 12  MSCALALLFLGLVT----SNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLV 71
           M+ A+AL+ + +V     ++  +D+ ECT Q+VG+ATCLPYV G+AK+PTPDCCSGL+ V
Sbjct: 9   MATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQV 68

Query: 72  VQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDCIA 115
           +   MKCLC++I++RNDP LGL+VN++LAL LP+VCH  A+IT C A
Sbjct: 69  INSDMKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPA 115

[Close]

BLAST of Cp4.1LG05g05270.1 vs. TAIR 10
Match: AT1G55260.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-31
Identity = 69/180 (38.33%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 2   TSKSPSTNLAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCC 61
           T +  +  L ++  +  + LG   S++ QDR ECT+Q++ L+TC+PYVGG+AKAPT DCC
Sbjct: 43  TMEKSTRTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCC 102

Query: 62  SGLRLVVQKSMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCH-TPANITDCIA------ 121
           +G   V++KS KC+C+L++D++DP LG+K+N TLA  LP+ CH T  NITDCI+      
Sbjct: 103 AGFGQVIRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPR 162

Query: 122 -------------------SSNPTE----------KPDVKNDGGMRKQRMGVEIFISCIV 146
                              S++PT+             VK++G   K  +GVE+ I  +V
Sbjct: 163 NSTLAKEFENLGRIEDNYNSTSPTQIHKDGTGGGKAEPVKSNGWKEKSWLGVELLIYLLV 222

[Close]

BLAST of Cp4.1LG05g05270.1 vs. TAIR 10
Match: AT3G58550.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-22
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 10  LAMSCALALLFLGLVTSNVDQDRAECTDQVVGLATCLPYVGGEAKAPTPDCCSGLRLVVQ 69
           LA+   +A++FLG V S + QD   C D +  L +CLP+V  +AKAP   CCS L++ + 
Sbjct: 14  LALCITVAVMFLG-VRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKID 73

Query: 70  K--SMKCLCVLIKDRNDPTLGLKVNLTLALGLPNVCHTPANITDC 113
           K  + KCLC L+KDR+DP LG KV+   A+ LP+ CH PANI+ C
Sbjct: 74  KGQTRKCLCTLVKDRDDPGLGFKVDANRAMSLPSACHVPANISQC 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64865	2.8e-31	56.60	Non-specific lipid transfer protein GPI-anchored 14 OS=Arabidopsis thaliana OX=3...	[more]
O64864	3.1e-30	56.07	Non-specific lipid transfer protein GPI-anchored 13 OS=Arabidopsis thaliana OX=3...	[more]
F4I082	2.0e-29	39.53	Non-specific lipid transfer protein GPI-anchored 6 OS=Arabidopsis thaliana OX=37...	[more]
Q9M2G1	4.4e-21	47.62	Non-specific lipid transfer protein GPI-anchored 22 OS=Arabidopsis thaliana OX=3...	[more]
Q9C9B1	1.4e-11	33.63	Non-specific lipid transfer protein GPI-anchored 10 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cp4.1LG05g05270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534119.1	1.31e-100	83.43	protein YLS3-like [Cucurbita pepo subsp. pepo] >KAG6605872.1 Protein YLS3, parti...	[more]
XP_022958128.1	5.12e-98	81.77	protein YLS3-like [Cucurbita moschata]	[more]
XP_022995769.1	1.47e-97	80.66	protein YLS3-like isoform X1 [Cucurbita maxima]	[more]
XP_022995770.1	2.10e-76	99.12	protein YLS3-like isoform X2 [Cucurbita maxima]	[more]
XP_022986687.1	5.26e-66	59.24	protein YLS3-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g05270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2A2	2.48e-98	81.77	protein YLS3-like OS=Cucurbita moschata OX=3662 GN=LOC111459449 PE=4 SV=1	[more]
A0A6J1K6V2	7.11e-98	80.66	protein YLS3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491205 PE=4 SV...	[more]
A0A6J1K4W0	1.02e-76	99.12	protein YLS3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491205 PE=4 SV...	[more]
A0A6J1J894	2.55e-66	59.24	protein YLS3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484364 PE=4 SV...	[more]
A0A6J1JBX4	5.48e-66	58.60	protein YLS3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484364 PE=4 SV...	[more]

BLAST of Cp4.1LG05g05270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44300.1	2.0e-32	56.60	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G55260.2	2.2e-31	38.98	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G44290.1	2.2e-31	56.07	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G55260.1	4.9e-31	38.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G58550.1	3.2e-22	47.62	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 35..112 e-value: 3.8E-5 score: 33.1
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 24..112 e-value: 1.2E-12 score: 47.8
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 32..112 e-value: 1.5E-13 score: 52.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 34..112
IPR043325	Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein	PANTHER	PTHR33044	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 10..121
None	No IPR available	PANTHER	PTHR33044:SF194	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 10..121
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 42..104 e-value: 7.35524E-17 score: 68.2222

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g05270	Cp4.1LG05g05270	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05270.1:five_prime_utr:001	Cp4.1LG05g05270.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05270.1:exon:001	Cp4.1LG05g05270.1:exon:001	exon
Cp4.1LG05g05270.1:exon:002	Cp4.1LG05g05270.1:exon:002	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05270.1:cds:001	Cp4.1LG05g05270.1:cds:001	CDS
Cp4.1LG05g05270.1:cds:002	Cp4.1LG05g05270.1:cds:002	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05270.1:three_prime_utr:001	Cp4.1LG05g05270.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05270.1	Cp4.1LG05g05270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005886	plasma membrane