Cp4.1LG04g16290.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g16290.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 12589551 .. 12593125 (+)
Sequence length2084
RNA-Seq ExpressionCp4.1LG04g16290.1
SyntenyCp4.1LG04g16290.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAGGGGTATAAGAATTAAATAGTTGAATAATGTAATAAAGGGGTTTAGCGCCACATTCGAGTAGCAAGGCGTGGTCGCCCCATTCTAAATTGGCCAACGAAGAGGTTTTGGAAAACCCTAGCTGCCTTCTCCCTTCCCTGTTTCACCCAATAGGACAGACTCTACGGCCTCCACTAATAGCTCCAATGCTCCATCTCTTTCCTTCTCCCTCCCGTTTTGCGTTCAATGGTGTACCTCAATGTCTGAATTGCATTTTGTTTGTCTTACAGCGGTTTTGATCTGGTAGCAACAAGCGAGAACAAGAAGATCGGGAGGTCCGCTCCTACTCCGACGAAATCTATCTCAAGCTCTTCGTCAAGGTAGGCTTTTTAACAATCACTGTTTCTGCTGAACTAATAGCAGGAGCCAGCACTTGCATTTACAGTTTTCTTTTCTCCGAGAATCTAGTTGATTTGTGTTCGTTTGTTTATGACGAAATAATTAGTTAGTTGACTGGAGGCATCAACCTAATTTTTAAAGCATCAACCTAATTTTCAAAGCATCAACCTAATTTTCAAAGCATCAACCTAATTTTCAAAGCATCAACCCGAACTCCAGCTACTTGTTTTTTATTTTTAAAATTTTATATGACATCTTAGAGACAATTAGGTCGGGTATGTTCTGCACCTACTTTTAAAGGAAAAAAGAAATCGTATATTTCCACACTCAAAATTTACTACTGTTCTCCTATGTATTCCATTCCAGTTTTGGAACGAATGTAAATTAATAAATGCGTGAATTGTCAATTTTAGTCCAGCGCTATGTTTCAAATATCCAACACCATCTCAACTCTTTGACAACTGTTTGACATGAATCTAATATACTAATTAAATGTAGGGACGCATATTCAATGAGTATTGGGCTGTTCTTCGTGAACTGCACATAGATACACGACCCAAGCTAAAGTATCCGTGGTTGATTGATTCTTACTTTGATTCCTTTTCGTAGTTTTTCGGCATCTTGCAACTGTAGTAGACAATTGAAGCAACCAACTTTATTGAACCTAAACGTTGGTTTATATTGACACCAAGCTAGGAGCACTCTAGGAATGAGTTCTTTATTTTTATTACTGAATGCTTGTTTATTACTCCGCCTTGGACTTCATGAATATTGGAGAAATGTGAAAATTGTGTGTCAAAAAGTTTCATTCACTTGCTCTACCACATGGTCTCCATTGTTTATTTGTGTTGCTGCAATTAGAGAAAGATACGGAAGTGAAGAATGCCTACTTCCTGATATTCTCACGTCTTTTACTTGTTCGTTATCTCAGTTTGTACATTTTCTTTTGGTGAAAGTTTGTTTTCCTTATCTCTGGTTGTAACTAAGTGAATAATTTTTGGACTAAGTGGTGAGATTAATTCTGCAGATGAAAACCAAAAAGTCGAAGACAGCTACAACTTCCGTCTCTATTGTTGATTTGAAGTCCATCATTCATCAGCATGCAATGTTCTTCGACAAGTTAGTGGAGCTCATCCCTGCAAGATTCTACTTACCCAATGACGAAAACGACAAACCTTGGTTTCAGGGCCTTAGCAACACCGAGAAGGCTTTGGCTAAGAAGGAATCAAAGGAAAATCTTAAGAAAGCTCGAAGAGATCGAATGGATCCTGAAAAGTCAGCTAGATCAACCGTTGATTTGCTGAAGCAAAACTTGGAAAAGAACAAGTTAAAAGATGAAAGCGATGATAATGAAATGGATGTTAAGCCAGTAACGTCTGGGTTGGATGGTGATGTTCAATCAGTTACATATGAAGAGCTTCGACAACGTCTTCATCGAAAGATTGAAGAGTTCCGAGCAAATAGAAATACAGGATGTTCGAATAGGGAAAAGAAGAGGAATGAAAGAAATGAGAGGAGGGAACTTATTCAGAAGAAACGCAAGAGAGAACATGGTCCTGAGGAAAAGAAATTAGCAGGGCACCACTCAAGAGATGAAGTGGAGAAGAATGTAGATGAAGCCTCTAAAGAACTTGCATTCAGTCATGTCAAACTCGGGACTGAAGAAGAGCATGGGAAGAAAAAGAAGAGAAAGCTCTCCAAGTTGGAGGAGCTTGAAAGGGCTAAAAAATTAGACGAAGCAAAGAGAGATCCTGAGAAAGGCGAGATAATCTCAAAGAAGCATTCTTGGAAAGCAGCCACAAGTAGAGCTGCGGGGGCTAAGGTTCACGATGATCCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAGCTGAAGAATGTCGAGAAATGGAAGGATAGGATTGAAACAACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGGTCAGAAAACATTTCACACAAAATTCATGATAAGAAGATGCGGCGAATTGCAAAGAGGGAGAAGAAACTTATGCGTCCTGGCTTTGAAGGTCGTAAAGAAGGTTTCATCAACGGAAGCACCCCATAAAGTGAAAGCAGGTTTTGTTTTACCTTTGAAATGCAGTTGCTGCCCTGTTTTTCCTTAGTAGCTTTAACATATTTGTGTTTCTTTCTCAGTGAAAACAATTGAGAACGAAAAACAAGAAATTGTTTTAAACCACGTCCCTTGTTCTTCACTTGAAGCAAAAAAAAGAGCCATACAATGTCTTGAGTAATATTTTTCCACCGTAAATGATAATCTTAGAATTAAGGTATAGAAATTTGTTAGGTAAATAAATACACATCGAATGGAGGAGGCAAGAATGGTGAGCAGGAAAGCGTAGGGGTTGGGGGGTCGGTCAAATGGTGTTACGACAGAGGAGTGGACAAGTTCACCGACCAGGACCAGCAGGAAAGGAAGGAACACGTGAATTAAGATGGGGTAATCAAAGTTTTAAGTTTTAACTTAACAATAATATTTCAACGAATTGGTGCTAAATTAAAAGACACGCGAGGAAGGAAGAATTATTGTTTTTGTATGAGGGTTTTCCTTTTCTTCTTCTTTTTTGGCTAATTAACTTGTAATCTCTGTTTTCAATAACATCGAAATTGGACGATGAGCAGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCATGGAGATGGTTGTTCTGCAACCTTTGTTAGAGTGGTGAGTGGAAATTCTAGATTCCCCCCTTTTTGTTTTCAATAACATGGTTTTAATTCGTGGCTGAAAGAACAGTGACAGCTTCATTATTTGCGTTGCAGGATAGCAGTTTGGTATTGGGTGAAATTGGTATTTGGGGCATGGCTGGTTCTGCCACAGGTGCAGCTTTCTTGTATGAAAGATTCGTGAGGCTGCAGACATGTTTCGGGAAGCAATTCTCCTGATGCGTTGATTCACTAACTGGTACACACGTCTCTTGTTTTCGTATGGTGTGCGAAAATAATTGGTATTGGGTTTGTATATAGACAGTTTAAAGAATTTCAATTCATCCAAAACTGTGTATAAGTTGCACATCTTTTCATTTTAGTATTACTGCGTTGTAAGAGAGTTAATATGACGGTCTCTGCCTAACCCCACATTTCTCTTACTTTCTGTACCTATTACCCTCTCTTCTTCACTCTTACCCTTT

mRNA sequence

TGTAGGGGTATAAGAATTAAATAGTTGAATAATGTAATAAAGGGGTTTAGCGCCACATTCGAGTAGCAAGGCGTGGTCGCCCCATTCTAAATTGGCCAACGAAGAGCGGTTTTGATCTGGTAGCAACAAGCGAGAACAAGAAGATCGGGAGGTCCGCTCCTACTCCGACGAAATCTATCTCAAGCTCTTCGTCAAGATGAAAACCAAAAAGTCGAAGACAGCTACAACTTCCGTCTCTATTGTTGATTTGAAGTCCATCATTCATCAGCATGCAATGTTCTTCGACAAGTTAGTGGAGCTCATCCCTGCAAGATTCTACTTACCCAATGACGAAAACGACAAACCTTGGTTTCAGGGCCTTAGCAACACCGAGAAGGCTTTGGCTAAGAAGGAATCAAAGGAAAATCTTAAGAAAGCTCGAAGAGATCGAATGGATCCTGAAAAGTCAGCTAGATCAACCGTTGATTTGCTGAAGCAAAACTTGGAAAAGAACAAGTTAAAAGATGAAAGCGATGATAATGAAATGGATGTTAAGCCAGTAACGTCTGGGTTGGATGGTGATGTTCAATCAGTTACATATGAAGAGCTTCGACAACGTCTTCATCGAAAGATTGAAGAGTTCCGAGCAAATAGAAATACAGGATGTTCGAATAGGGAAAAGAAGAGGAATGAAAGAAATGAGAGGAGGGAACTTATTCAGAAGAAACGCAAGAGAGAACATGGTCCTGAGGAAAAGAAATTAGCAGGGCACCACTCAAGAGATGAAGTGGAGAAGAATGTAGATGAAGCCTCTAAAGAACTTGCATTCAGTCATGTCAAACTCGGGACTGAAGAAGAGCATGGGAAGAAAAAGAAGAGAAAGCTCTCCAAGTTGGAGGAGCTTGAAAGGGCTAAAAAATTAGACGAAGCAAAGAGAGATCCTGAGAAAGGCGAGATAATCTCAAAGAAGCATTCTTGGAAAGCAGCCACAAGTAGAGCTGCGGGGGCTAAGGTTCACGATGATCCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAGCTGAAGAATGTCGAGAAATGGAAGGATAGGATTGAAACAACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGGTCAGAAAACATTTCACACAAAATTCATGATAAGAAGATGCGGCGAATTGCAAAGAGGGAGAAGAAACTTATGCGTCCTGGCTTTGAAGGTCGTAAAGAAGGTTTCATCAACGGAAGCACCCCATAAAGTGAAAGCAGGTTTTGTTTTACCTTTGAAATGCAGTTGCTGCCCTGTTTTTCCTTAGTAGCTTTAACATATTTGTGTTTCTTTCTCAGTGAAAACAATTGAGAACGAAAAACAAGAAATTGTTTTAAACCACGTCCCTTGTTCTTCACTTGAAGCAAAAAAAAGAGCCATACAATGTCTTGAGTAATATTTTTCCACCGTAAATGATAATCTTAGAATTAAGGTATAGAAATTTGTTAGGTAAATAAATACACATCGAATGGAGGAGGCAAGAATGGTGAGCAGGAAAGCGTAGGGGTTGGGGGGTCGGTCAAATGGTGTTACGACAGAGGAGTGGACAAGTTCACCGACCAGGACCAGCAGGAAAGGAAGGAACACGTGAATTAAGATGGGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCATGGAGATGGTTGTTCTGCAACCTTTGTTAGAGTGGATAGCAGTTTGGTATTGGGTGAAATTGGTATTTGGGGCATGGCTGGTTCTGCCACAGGTGCAGCTTTCTTGTATGAAAGATTCGTGAGGCTGCAGACATGTTTCGGGAAGCAATTCTCCTGATGCGTTGATTCACTAACTGGTACACACGTCTCTTGTTTTCGTATGGTGTGCGAAAATAATTGGTATTGGGTTTGTATATAGACAGTTTAAAGAATTTCAATTCATCCAAAACTGTGTATAAGTTGCACATCTTTTCATTTTAGTATTACTGCGTTGTAAGAGAGTTAATATGACGGTCTCTGCCTAACCCCACATTTCTCTTACTTTCTGTACCTATTACCCTCTCTTCTTCACTCTTACCCTTT

Coding sequence (CDS)

ATGGTGTTACGACAGAGGAGTGGACAAGTTCACCGACCAGGACCAGCAGGAAAGGAAGGAACACGTGAATTAAGATGGGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCATGGAGATGGTTGTTCTGCAACCTTTGTTAGAGTGGATAGCAGTTTGGTATTGGGTGAAATTGGTATTTGGGGCATGGCTGGTTCTGCCACAGGTGCAGCTTTCTTGTATGAAAGATTCGTGAGGCTGCAGACATGTTTCGGGAAGCAATTCTCCTGA

Protein sequence

MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSHGDGCSATFVRVDSSLVLGEIGIWGMAGSATGAAFLYERFVRLQTCFGKQFS
Homology
[Close]
BLAST of Cp4.1LG04g16290.1 vs. NCBI nr
Match: KAG7021386.1 (hypothetical protein SDJN02_15111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161 bits (408), Expect = 5.16e-49
Identity = 78/83 (93.98%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 1  MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSHGDGCSATFVRVDSSLVLGEI 60
          MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHS GDGC ATFVRVDSSLVLGEI
Sbjct: 1  MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI 60

Query: 61 GIWGMAGSATGAAFLYERFVRLQ 83
           IWGMAGSATG AFLYE FVRLQ
Sbjct: 61 SIWGMAGSATGPAFLYEGFVRLQ 83

[Close]
BLAST of Cp4.1LG04g16290.1 vs. NCBI nr
Match: KAG6587400.1 (Protein DEK, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 4.86e-44
Identity = 78/83 (93.98%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 1  MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSHGDGCSATFVRVDSSLVLGEI 60
          MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHS GDGC ATFVRVDSSLVLGEI
Sbjct: 1  MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI 60

Query: 61 GIWGMAGSATGAAFLYERFVRLQ 83
           IWGMAGSATG AFLYE FVRLQ
Sbjct: 61 SIWGMAGSATGPAFLYEGFVRLQ 83

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g16290.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g16290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021386.15.16e-4993.98hypothetical protein SDJN02_15111, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6587400.14.86e-4493.98Protein DEK, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cp4.1LG04g16290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g16290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG04g16290Cp4.1LG04g16290gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g16290.1:exon:001Cp4.1LG04g16290.1:exon:001exon
Cp4.1LG04g16290.1:exon:002Cp4.1LG04g16290.1:exon:002exon
Cp4.1LG04g16290.1:exon:003Cp4.1LG04g16290.1:exon:003exon
Cp4.1LG04g16290.1:exon:004Cp4.1LG04g16290.1:exon:004exon
Cp4.1LG04g16290.1:exon:005Cp4.1LG04g16290.1:exon:005exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g16290.1:five_prime_utr:001Cp4.1LG04g16290.1:five_prime_utr:001five_prime_UTR
Cp4.1LG04g16290.1:five_prime_utr:002Cp4.1LG04g16290.1:five_prime_utr:002five_prime_UTR
Cp4.1LG04g16290.1:five_prime_utr:003Cp4.1LG04g16290.1:five_prime_utr:003five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g16290.1:cds:001Cp4.1LG04g16290.1:cds:001CDS
Cp4.1LG04g16290.1:cds:002Cp4.1LG04g16290.1:cds:002CDS
Cp4.1LG04g16290.1:cds:003Cp4.1LG04g16290.1:cds:003CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g16290.1:three_prime_utr:001Cp4.1LG04g16290.1:three_prime_utr:001three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG04g16290.1Cp4.1LG04g16290.1-proteinpolypeptide