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Cp4.1LG03g17410.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCATTGGCGCTTACTTCCTCCGTTGTAGTATATATATAAAAACCATGCATTTCCAAATTGGAGTAAAAATAACAAAAAAGAAAAACGAAAAAGCTTTGAAGCTTGCTTGATTGCTTGTCAATGGCGGAGCTAGAGGACCCAACTGTCATGGCGAAGCTGATCGATTTCCTCTCTCGTCTCCTCCAACGAGTGGCCGAATCCAATGATCGAAGCCTCTCTGTTCATCTTCAACCCCACAAAATCTCAGCCTTCCATGGCTTAACTCGCCCCACCATTTCCATCCAAAGCTACTTAGACAGAATCTTGAAGTACGCCAATTGCAGCCCCTGTTGCTTCGTCATTGCCTACGTTTATCTCGATCGCTTCGTTCAAAGACAACCCTCCTTCCCCATCAATTCCTTCAATGTTCATCGCTTGCTCATCACCAGCGTTCTTATTGCTGCTAAATTTATGGATGATACGTGAGTTTCTAATCTGCTTGACAGGGATTTTTTTTAATATTTGGGGCATTTTTGAGTTTGCCTGCCAAATGTTTGATGAAATGCCTCAATGAACTCTGTTTTAAGAATTTGGGGCATTTTTGAGTTTGCCTGCCAAGTGTTTGATGAAATGCCTGAATGAACTCTGTTTAAGAATTTGGGGAATTTGAGTTGAATTTTACTGAAATATGTAGTGGAATTCTTTTCAGGTGCTATAACAATGCATATTATGCAAAGGTGGGAGGGATCAGCACAATTGAAATGAACTTTCTTGAAGTGGATTTTCTGTTTGGTTTGGGATTTCGTTTGAATGTCACTCCCACCACGTTCCATTCTTATTACTCATATCTTCAAAGACAGATGCTTCTGCTGCAGCCTCCTTTAATGAGCGCTGCTTCTTCAAAATCAGAGCTGCTTAGTTCAGCAAGAGCTTTGAAATCCCACTTCTGTTTTGATGAAGATGAAGCTTCCCTTACGAAGCAACAACTTGCAGCTGTTTGAACAAATTCCAACACAAATTTGGATTCAAACTTTGAAGAATTCAGCTCAAATGGAGCAAAACCCAGGTTTCAAAAGCATGAATTGGTTCTGTTGTTTGCCTGATTAGATAGTAATATTCAGCCTCTGACTGGATGAGCCTGTAATGTAGGGGTATCTCTCTCACACACACACACACACACACACCAACACAGCTTTGCAATTTTGGCTATGGCTGATTTGGGTCCTCGCCCTTTCATGATCGTCAGATCTTTGTTCTGTTTCTGATCTGATCTGTTTCTGTTCTGTTTGTGGGTTCTTGGGTTTCAAATTGTGTACAGATTAGATTCTTTTGGCGTTTTTAAAGATTTTGCAGCGTTTTGATGGAAATGGTATGGTTATTGAACACTCGAAGTCTCTGGTTTTGAGTTGATAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA CCATTGGCGCTTACTTCCTCCGTTGTAGTATATATATAAAAACCATGCATTTCCAAATTGGAGTAAAAATAACAAAAAAGAAAAACGAAAAAGCTTTGAAGCTTGCTTGATTGCTTGTCAATGGCGGAGCTAGAGGACCCAACTGTCATGGCGAAGCTGATCGATTTCCTCTCTCGTCTCCTCCAACGAGTGGCCGAATCCAATGATCGAAGCCTCTCTGTTCATCTTCAACCCCACAAAATCTCAGCCTTCCATGGCTTAACTCGCCCCACCATTTCCATCCAAAGCTACTTAGACAGAATCTTGAAGTACGCCAATTGCAGCCCCTGTTGCTTCGTCATTGCCTACGTTTATCTCGATCGCTTCGTTCAAAGACAACCCTCCTTCCCCATCAATTCCTTCAATGTTCATCGCTTGCTCATCACCAGCGTTCTTATTGCTGCTAAATTTATGGATGATACGTGCTATAACAATGCATATTATGCAAAGGTGGGAGGGATCAGCACAATTGAAATGAACTTTCTTGAAGTGGATTTTCTGTTTGGTTTGGGATTTCGTTTGAATGTCACTCCCACCACGTTCCATTCTTATTACTCATATCTTCAAAGACAGATGCTTCTGCTGCAGCCTCCTTTAATGAGCGCTGCTTCTTCAAAATCAGAGCTGCTTAGTTCAGCAAGAGCTTTGAAATCCCACTTCTGTTTTGATGAAGATGAAGCTTCCCTTACGAAGCAACAACTTGCAGCTGTTTGAACAAATTCCAACACAAATTTGGATTCAAACTTTGAAGAATTCAGCTCAAATGGAGCAAAACCCAGGTTTCAAAAGCATGAATTGGTTCTGTTGTTTGCCTGATTAGATAGTAATATTCAGCCTCTGACTGGATGAGCCTGTAATGTAGGGGTATCTCTCTCACACACACACACACACACACACCAACACAGCTTTGCAATTTTGGCTATGGCTGATTTGGGTCCTCGCCCTTTCATGATCGTCAGATCTTTGTTCTGTTTCTGATCTGATCTGTTTCTGTTCTGTTTGTGGGTTCTTGGGTTTCAAATTGTGTACAGATTAGATTCTTTTGGCGTTTTTAAAGATTTTGCAGCGTTTTGATGGAAATGGTATGGTTATTGAACACTCGAAGTCTCTGGTTTTGAGTTGATAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ATGGCGGAGCTAGAGGACCCAACTGTCATGGCGAAGCTGATCGATTTCCTCTCTCGTCTCCTCCAACGAGTGGCCGAATCCAATGATCGAAGCCTCTCTGTTCATCTTCAACCCCACAAAATCTCAGCCTTCCATGGCTTAACTCGCCCCACCATTTCCATCCAAAGCTACTTAGACAGAATCTTGAAGTACGCCAATTGCAGCCCCTGTTGCTTCGTCATTGCCTACGTTTATCTCGATCGCTTCGTTCAAAGACAACCCTCCTTCCCCATCAATTCCTTCAATGTTCATCGCTTGCTCATCACCAGCGTTCTTATTGCTGCTAAATTTATGGATGATACGTGCTATAACAATGCATATTATGCAAAGGTGGGAGGGATCAGCACAATTGAAATGAACTTTCTTGAAGTGGATTTTCTGTTTGGTTTGGGATTTCGTTTGAATGTCACTCCCACCACGTTCCATTCTTATTACTCATATCTTCAAAGACAGATGCTTCTGCTGCAGCCTCCTTTAATGAGCGCTGCTTCTTCAAAATCAGAGCTGCTTAGTTCAGCAAGAGCTTTGAAATCCCACTTCTGTTTTGATGAAGATGAAGCTTCCCTTACGAAGCAACAACTTGCAGCTGTTTGA MAELEDPTVMAKLIDFLSRLLQRVAESNDRSLSVHLQPHKISAFHGLTRPTISIQSYLDRILKYANCSPCCFVIAYVYLDRFVQRQPSFPINSFNVHRLLITSVLIAAKFMDDTCYNNAYYAKVGGISTIEMNFLEVDFLFGLGFRLNVTPTTFHSYYSYLQRQMLLLQPPLMSAASSKSELLSSARALKSHFCFDEDEASLTKQQLAAV Homology
BLAST of Cp4.1LG03g17410.1 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 1.2e-72 Identity = 139/206 (67.48%), Postives = 164/206 (79.61%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 1.4e-52 Identity = 102/171 (59.65%), Postives = 139/171 (81.29%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy Swiss-Prot
Match: Q9FKF6 (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 2.3e-52 Identity = 113/211 (53.55%), Postives = 153/211 (72.51%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 5.7e-51 Identity = 97/163 (59.51%), Postives = 126/163 (77.30%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy Swiss-Prot
Match: Q75HV0 (Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 7.5e-35 Identity = 76/161 (47.20%), Postives = 107/161 (66.46%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. NCBI nr
Match: XP_023526632.1 (cyclin-U4-1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 415 bits (1067), Expect = 3.14e-146 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. NCBI nr
Match: XP_022980409.1 (cyclin-U4-1-like [Cucurbita maxima]) HSP 1 Score: 410 bits (1054), Expect = 3.02e-144 Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. NCBI nr
Match: KAG6582537.1 (Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018921.1 Cyclin-U4-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 410 bits (1053), Expect = 4.29e-144 Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. NCBI nr
Match: XP_022924651.1 (cyclin-U4-1-like [Cucurbita moschata]) HSP 1 Score: 410 bits (1053), Expect = 4.29e-144 Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. NCBI nr
Match: XP_008438223.1 (PREDICTED: cyclin-U4-1 [Cucumis melo] >KAA0049071.1 cyclin-U4-1 [Cucumis melo var. makuwa] >TYK17491.1 cyclin-U4-1 [Cucumis melo var. makuwa]) HSP 1 Score: 381 bits (979), Expect = 8.50e-133 Identity = 194/211 (91.94%), Postives = 201/211 (95.26%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy TrEMBL
Match: A0A6J1IZ73 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111479783 PE=3 SV=1) HSP 1 Score: 410 bits (1054), Expect = 1.46e-144 Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy TrEMBL
Match: A0A6J1EA16 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111432083 PE=3 SV=1) HSP 1 Score: 410 bits (1053), Expect = 2.08e-144 Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy TrEMBL
Match: A0A5A7U636 (Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003560 PE=3 SV=1) HSP 1 Score: 381 bits (979), Expect = 4.11e-133 Identity = 194/211 (91.94%), Postives = 201/211 (95.26%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy TrEMBL
Match: A0A1S3AWI3 (Cyclin OS=Cucumis melo OX=3656 GN=LOC103483393 PE=3 SV=1) HSP 1 Score: 381 bits (979), Expect = 4.11e-133 Identity = 194/211 (91.94%), Postives = 201/211 (95.26%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. ExPASy TrEMBL
Match: A0A0A0L3W4 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_3G127030 PE=3 SV=1) HSP 1 Score: 372 bits (956), Expect = 1.32e-129 Identity = 190/211 (90.05%), Postives = 200/211 (94.79%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 ) HSP 1 Score: 274.2 bits (700), Expect = 8.4e-74 Identity = 139/206 (67.48%), Postives = 164/206 (79.61%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 ) HSP 1 Score: 207.6 bits (527), Expect = 9.7e-54 Identity = 102/171 (59.65%), Postives = 139/171 (81.29%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 ) HSP 1 Score: 206.8 bits (525), Expect = 1.7e-53 Identity = 113/211 (53.55%), Postives = 153/211 (72.51%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 ) HSP 1 Score: 142.5 bits (358), Expect = 3.8e-34 Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 0
BLAST of Cp4.1LG03g17410.1 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 ) HSP 1 Score: 142.1 bits (357), Expect = 5.0e-34 Identity = 64/127 (50.39%), Postives = 89/127 (70.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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