Cp4.1LG03g08190.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g08190.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG03: 2929562 .. 2930419 (-)
Sequence length	858
RNA-Seq Expression	Cp4.1LG03g08190.1
Synteny	Cp4.1LG03g08190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTACTCCGGCTCCGGCATGGTCGATCAAGCTATCCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAGATTGGTGTTACTCCGACGGTGGTTTCGCACAATCTGGTGTTGAAGGCTTTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTGTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTACAATTTCGCTAGTTACAATTACAGGATTTTGAGGATGTGCAAGAACATGGAGTGTGCACGGGCCAAGAAAATGCTAGATGAGATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATGGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGCCTGGTTCGTGGATTGGTGGGTATATCAAAGGTTGAAGAGGCAAAAGAGATTGTTGAGAAGATGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

mRNA sequence

ATGCTCTACTCCGGCTCCGGCATGGTCGATCAAGCTATCCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAGATTGGTGTTACTCCGACGGTGGTTTCGCACAATCTGGTGTTGAAGGCTTTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTGTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTACAATTTCGCTAGTTACAATTACAGGATTTTGAGGATGTGCAAGAACATGGAGTGTGCACGGGCCAAGAAAATGCTAGATGAGATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATGGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGCCTGGTTCGTGGATTGGTGGGTATATCAAAGGTTGAAGAGGCAAAAGAGATTGTTGAGAAGATGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

Coding sequence (CDS)

ATGCTCTACTCCGGCTCCGGCATGGTCGATCAAGCTATCCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAGATTGGTGTTACTCCGACGGTGGTTTCGCACAATCTGGTGTTGAAGGCTTTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTGTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTACAATTTCGCTAGTTACAATTACAGGATTTTGAGGATGTGCAAGAACATGGAGTGTGCACGGGCCAAGAAAATGCTAGATGAGATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATGGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGCCTGGTTCGTGGATTGGTGGGTATATCAAAGGTTGAAGAGGCAAAAGAGATTGTTGAGAAGATGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

Protein sequence

MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEFTCREIIKRRWVPPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL

Homology

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy Swiss-Prot
Match: Q8LE47 (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-34
Identity = 91/293 (31.06%), Postives = 163/293 (55.63%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRT---LDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPE 60
           +LY+ + M+D ++R    L++  +++    + KSL A+L   L     ++   ++  +P+
Sbjct: 124 VLYAQANMLDHSLRVFRDLEKFEISR----TVKSLNALLFACLVAKDYKEAKRVYIEMPK 183

Query: 61  KIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYW--NK 120
             G+ P + ++N ++K F +     S+ + + E+ +   K  PN  S+ +++  ++  +K
Sbjct: 184 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIK--PNSSSFGLMISGFYAEDK 243

Query: 121 GDLVGFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSY 180
            D VG   ++  +  RG+    ++YN RI  +CK  +   AK +LD M+S G+KPN+ +Y
Sbjct: 244 SDEVG--KVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTY 303

Query: 181 DAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREII 240
             +IHG+ N  D E A K+ K M+  G   P S  Y+ LI  + K G+F      C+E +
Sbjct: 304 SHLIHGFCNEDDFEEAKKLFKIMVNRG-CKPDSECYFTLIYYLCKGGDFETALSLCKESM 363

Query: 241 KRRWVPPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAAL 284
           ++ WVP F  M+ LV GL   SKVEEAKE++ ++K+      ++ W ++EAAL
Sbjct: 364 EKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFT-RNVELWNEVEAAL 406

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy Swiss-Prot
Match: Q9SAB4 (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-30
Identity = 80/293 (27.30%), Postives = 160/293 (54.61%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRT---LDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPE 60
           +LY  + M+D++I+T   L+Q  + +    + KSL A+L   L     ++ + ++  +P+
Sbjct: 119 ILYGRANMLDRSIQTFRNLEQYEIPR----TVKSLNALLFACLMAKDYKEANRVYLEMPK 178

Query: 61  KIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGD 120
             G+ P + ++N +++   +     S+ + + E+ +   K  P   S+ +++  ++ +  
Sbjct: 179 MYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIK--PTAASFGLMIDGFYKEEK 238

Query: 121 LVGFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDA 180
                 +++ + + G+    A+YN  I  +CK  + A AK ++D ++S  ++PNS +Y  
Sbjct: 239 FDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSL 298

Query: 181 IIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKR 240
           +IHG+ +  +++ A  + + M+ +G+  P S  Y+ LI  + K G+F      CRE +++
Sbjct: 299 LIHGFCSEENLDEAMNLFEVMVCNGY-KPDSECYFTLIHCLCKGGDFETALILCRESMEK 358

Query: 241 RWVPPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 286
            WVP F  M+ LV GL   SKV+EAKE++  +K+      +D W ++EAAL L
Sbjct: 359 NWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFT-RNVDLWNEVEAALPL 403

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy Swiss-Prot
Match: Q9LK58 (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX=3702 GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-26
Identity = 77/271 (28.41%), Postives = 146/271 (53.87%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQV-ILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKI 60
           +LY  SGM + A +  D++  LN  C+ + KS  A+LS Y+N+   ++  + F+ +PEK+
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELN--CERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKL 189

Query: 61  GVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLV 120
           G+TP +V++N ++KA  ++  ++   +  +EL K+  +  P++ S+N LL  ++ +   V
Sbjct: 190 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFE--PDLISFNTLLEEFYRRELFV 249

Query: 121 GFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAII 180
             D I   +  + L  N  SYN R+  + +N +   A  ++D M ++G+ P+  +Y+A+I
Sbjct: 250 EGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALI 309

Query: 181 HGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRW 240
             Y    ++E   K    M E G ++P +  Y  LI  + K+G+         E IK + 
Sbjct: 310 TAYRVDNNLEEVMKCYNEMKEKG-LTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKL 369

Query: 241 VPPFEAMEGLVRGLVGISKVEEAKEIVEKMK 266
           +      + +V  L+G  K++EA ++V+  K
Sbjct: 370 LSRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy Swiss-Prot
Match: Q9LG23 (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-23
Identity = 75/269 (27.88%), Postives = 140/269 (52.04%), Query Frame = 0


Query: 2   LYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGV 61
           LY  +GM + A +  ++ + N+ C  S  S  A+LS Y  +   + V E+F  +P K+ +
Sbjct: 118 LYGKAGMFENAQKVFEE-MPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSI 177

Query: 62  TPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGF 121
            P +VS+N ++KA  +++ L  A   +DE+     K  P+I ++N LL + + KG     
Sbjct: 178 KPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLK--PDIVTFNTLLLSSYLKGQFELG 237

Query: 122 DGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIHG 181
           + I  ++ ++ +  +  +YN R+L +    +      +  E+ + G+KP+  S++A+I G
Sbjct: 238 EEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRG 297

Query: 182 YGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEFTC-----REIIKRRWVP 241
             N G ++ A    K +++ G+  P    +  L+ +M K G+F       +E   +R++ 
Sbjct: 298 SINEGKMDEAEAWYKEIVKHGY-RPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLV 357

Query: 242 PFEAMEGLVRGLVGISKVEEAKEIVEKMK 266
               ++ LV  LV  SK EEA+EIV+  K
Sbjct: 358 GQTTLQQLVDELVKGSKREEAEEIVKIAK 382

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy Swiss-Prot
Match: Q9M065 (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.5e-22
Identity = 75/289 (25.95%), Postives = 149/289 (51.56%), Query Frame = 0


Query: 3   YSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG-V 62
           Y  + M + A+RT +Q+        S  S  A+L+  L++   +KV ++F  IP++   +
Sbjct: 112 YGQASMFNHAMRTFEQMD-QYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKI 171

Query: 63  TPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGF 122
            P  +S+ +++K++      E A   + ++     +V     ++  +L + + KG+L   
Sbjct: 172 IPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEV--TTIAFTTILSSLYKKGELEVA 231

Query: 123 DGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIHG 182
           D +  E+ K+G E + A+YN RI+   K     R K++++EM S G+KP++ SY+ ++  
Sbjct: 232 DNLWNEMVKKGCELDNAAYNVRIMSAQKESP-ERVKELIEEMSSMGLKPDTISYNYLMTA 291

Query: 183 YGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLI-----RSMVKEGEFTCREIIKRRWVP 242
           Y   G ++ A KV +  LE  + +P++  +  LI       + ++G    ++ +    +P
Sbjct: 292 YCERGMLDEAKKVYEG-LEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIP 351

Query: 243 PFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 286
            F  ++ LV GLV   K ++AK ++  +KK      +++W K+E  L L
Sbjct: 352 DFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395

[Close]

BLAST of Cp4.1LG03g08190.1 vs. NCBI nr
Match: XP_022983790.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 538 bits (1386), Expect = 1.62e-190
Identity = 270/285 (94.74%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS SGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG
Sbjct: 117 MLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 176

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTVVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG
Sbjct: 177 VTPTVVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 236

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FDGIVKEISKRGLE+N A+YNYRILR+CKN ECARAKK+LDEMVSKGVKPNSSSYDAII+
Sbjct: 237 FDGIVKEISKRGLEFNLATYNYRILRLCKNKECARAKKLLDEMVSKGVKPNSSSYDAIIY 296

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEFTCREIIKRRWVPPFEA 240
           GYGNVGDIELATKVLKSMLEDGHVS SSRIYY LIRSMVKEGEFTCREIIKRRWVPPFEA
Sbjct: 297 GYGNVGDIELATKVLKSMLEDGHVSLSSRIYYSLIRSMVKEGEFTCREIIKRRWVPPFEA 356

Query: 241 MEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           MEGLVRGLVGISKVEEAKE+VEKMKKMLKGPA+DSWGKIEAALSL
Sbjct: 357 MEGLVRGLVGISKVEEAKEVVEKMKKMLKGPAVDSWGKIEAALSL 401

[Close]

BLAST of Cp4.1LG03g08190.1 vs. NCBI nr
Match: XP_022983789.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 532 bits (1370), Expect = 5.27e-188
Identity = 270/290 (93.10%), Postives = 277/290 (95.52%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS SGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG
Sbjct: 117 MLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 176

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTVVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG
Sbjct: 177 VTPTVVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 236

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FDGIVKEISKRGLE+N A+YNYRILR+CKN ECARAKK+LDEMVSKGVKPNSSSYDAII+
Sbjct: 237 FDGIVKEISKRGLEFNLATYNYRILRLCKNKECARAKKLLDEMVSKGVKPNSSSYDAIIY 296

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GYGNVGDIELATKVLKSMLEDGHVS SSRIYY LIRSMVKEGEF     TCREIIKRRWV
Sbjct: 297 GYGNVGDIELATKVLKSMLEDGHVSLSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWV 356

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFEAMEGLVRGLVGISKVEEAKE+VEKMKKMLKGPA+DSWGKIEAALSL
Sbjct: 357 PPFEAMEGLVRGLVGISKVEEAKEVVEKMKKMLKGPAVDSWGKIEAALSL 406

[Close]

BLAST of Cp4.1LG03g08190.1 vs. NCBI nr
Match: XP_038906046.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 489 bits (1259), Expect = 4.24e-171
Identity = 243/290 (83.79%), Postives = 266/290 (91.72%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS +GMVDQA+ TLDQVIL+KPCDLSEKSL AVLSV+L+NSMPEKVHEMFR+IPEKI 
Sbjct: 118 MLYSSAGMVDQALHTLDQVILHKPCDLSEKSLSAVLSVFLDNSMPEKVHEMFRSIPEKIS 177

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTVVS+N V KAFVQQNDL+SARNWIDE+YKDDAKVVPNIDSYNILLGA+WN GDLVG
Sbjct: 178 VTPTVVSYNQVSKAFVQQNDLQSARNWIDEMYKDDAKVVPNIDSYNILLGAHWNNGDLVG 237

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FDGIVKEISKRGL++N A+YNYRILR+CKN ECARAKK++DEMVSKGVKPNS  YDAIIH
Sbjct: 238 FDGIVKEISKRGLDFNLATYNYRILRLCKNKECARAKKVMDEMVSKGVKPNSGCYDAIIH 297

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GY NVGDIE A K+LKSMLEDG+ SPSSR YY LIRSMVKEGEF     TCREIIKRRWV
Sbjct: 298 GYCNVGDIESAMKILKSMLEDGYASPSSRSYYSLIRSMVKEGEFDLALETCREIIKRRWV 357

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFEAMEGLVRGLV +S++EEAKE+VEKMKK LKGPA+DSWGKIEAALSL
Sbjct: 358 PPFEAMEGLVRGLVDMSRIEEAKEVVEKMKKRLKGPAVDSWGKIEAALSL 407

[Close]

BLAST of Cp4.1LG03g08190.1 vs. NCBI nr
Match: XP_008443376.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis melo] >KAA0053787.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25614.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 468 bits (1204), Expect = 9.15e-163
Identity = 229/290 (78.97%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS  GMV QA+  LDQ IL+KPC+LSEKSLCA+LSVYL+NSMPEKVHEMFR+ PEKIG
Sbjct: 116 MLYSSVGMVSQALHILDQAILHKPCNLSEKSLCAILSVYLDNSMPEKVHEMFRSTPEKIG 175

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTV+SHNLVLKAFV+QNDL SARNWIDELYKDDAKV+PNIDSY ILLGAYW+ GD+VG
Sbjct: 176 VTPTVISHNLVLKAFVRQNDLPSARNWIDELYKDDAKVIPNIDSYTILLGAYWSNGDMVG 235

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FD I+KEI  RGLE+N A+YNYRI R+CKN ECARAKK+LDEM+SKGVKPNSSSYD+IIH
Sbjct: 236 FDEIMKEILNRGLEFNIATYNYRISRLCKNKECARAKKILDEMISKGVKPNSSSYDSIIH 295

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GY +VGDIE A K+LK MLEDGHVSP+SRIY+ LIRSMVKEGEF     TCR+++KRRWV
Sbjct: 296 GYCDVGDIESAMKILKGMLEDGHVSPTSRIYFRLIRSMVKEGEFDLALDTCRQMLKRRWV 355

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFE ME LVRGLV +SKVEEAKE+VEKMKK LKGPA+DSW KIEA L+L
Sbjct: 356 PPFETMEALVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWRKIEATLAL 405

[Close]

BLAST of Cp4.1LG03g08190.1 vs. NCBI nr
Match: XP_004136798.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucumis sativus] >KGN59539.1 hypothetical protein Csa_001938 [Cucumis sativus])

HSP 1 Score: 465 bits (1196), Expect = 1.51e-161
Identity = 231/290 (79.66%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS  GMV+QA+  LDQ IL+K C+LSEKSLCA+LSV+L+NSMPEKVHEMFR+IPEKIG
Sbjct: 116 MLYSSVGMVNQALYILDQAILHKSCNLSEKSLCAILSVFLDNSMPEKVHEMFRSIPEKIG 175

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPT VSHNLVLKAFV+QNDL SARNWIDEL KDDAKV+PNIDS+ ILLGAYW+ GD++G
Sbjct: 176 VTPTAVSHNLVLKAFVRQNDLPSARNWIDELCKDDAKVIPNIDSFTILLGAYWSNGDMIG 235

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FD I KEISKRGLE+N A+YNYRI R+CKN ECARAKK+LDEM+SKGVKPNSSSYD+IIH
Sbjct: 236 FDEIEKEISKRGLEFNLATYNYRISRLCKNKECARAKKILDEMISKGVKPNSSSYDSIIH 295

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GY +VGDIE A K+LK +LEDGHVSP+SRIYY LIRSMVKEGEF     TCRE IKRRWV
Sbjct: 296 GYCDVGDIESAMKILKGILEDGHVSPTSRIYYRLIRSMVKEGEFEMALETCRETIKRRWV 355

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFEAME LVRGLV +SKVEEAKE+VEKMKK LKGPA+DSW KIEAAL L
Sbjct: 356 PPFEAMEALVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWRKIEAALPL 405

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy TrEMBL
Match: A0A6J1J6X0 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482304 PE=4 SV=1)

HSP 1 Score: 538 bits (1386), Expect = 7.83e-191
Identity = 270/285 (94.74%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS SGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG
Sbjct: 117 MLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 176

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTVVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG
Sbjct: 177 VTPTVVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 236

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FDGIVKEISKRGLE+N A+YNYRILR+CKN ECARAKK+LDEMVSKGVKPNSSSYDAII+
Sbjct: 237 FDGIVKEISKRGLEFNLATYNYRILRLCKNKECARAKKLLDEMVSKGVKPNSSSYDAIIY 296

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEFTCREIIKRRWVPPFEA 240
           GYGNVGDIELATKVLKSMLEDGHVS SSRIYY LIRSMVKEGEFTCREIIKRRWVPPFEA
Sbjct: 297 GYGNVGDIELATKVLKSMLEDGHVSLSSRIYYSLIRSMVKEGEFTCREIIKRRWVPPFEA 356

Query: 241 MEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           MEGLVRGLVGISKVEEAKE+VEKMKKMLKGPA+DSWGKIEAALSL
Sbjct: 357 MEGLVRGLVGISKVEEAKEVVEKMKKMLKGPAVDSWGKIEAALSL 401

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy TrEMBL
Match: A0A6J1J8H6 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482304 PE=4 SV=1)

HSP 1 Score: 532 bits (1370), Expect = 2.55e-188
Identity = 270/290 (93.10%), Postives = 277/290 (95.52%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS SGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG
Sbjct: 117 MLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 176

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTVVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG
Sbjct: 177 VTPTVVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 236

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FDGIVKEISKRGLE+N A+YNYRILR+CKN ECARAKK+LDEMVSKGVKPNSSSYDAII+
Sbjct: 237 FDGIVKEISKRGLEFNLATYNYRILRLCKNKECARAKKLLDEMVSKGVKPNSSSYDAIIY 296

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GYGNVGDIELATKVLKSMLEDGHVS SSRIYY LIRSMVKEGEF     TCREIIKRRWV
Sbjct: 297 GYGNVGDIELATKVLKSMLEDGHVSLSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWV 356

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFEAMEGLVRGLVGISKVEEAKE+VEKMKKMLKGPA+DSWGKIEAALSL
Sbjct: 357 PPFEAMEGLVRGLVGISKVEEAKEVVEKMKKMLKGPAVDSWGKIEAALSL 406

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy TrEMBL
Match: A0A5A7UGZ0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007730 PE=4 SV=1)

HSP 1 Score: 468 bits (1204), Expect = 4.43e-163
Identity = 229/290 (78.97%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS  GMV QA+  LDQ IL+KPC+LSEKSLCA+LSVYL+NSMPEKVHEMFR+ PEKIG
Sbjct: 116 MLYSSVGMVSQALHILDQAILHKPCNLSEKSLCAILSVYLDNSMPEKVHEMFRSTPEKIG 175

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTV+SHNLVLKAFV+QNDL SARNWIDELYKDDAKV+PNIDSY ILLGAYW+ GD+VG
Sbjct: 176 VTPTVISHNLVLKAFVRQNDLPSARNWIDELYKDDAKVIPNIDSYTILLGAYWSNGDMVG 235

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FD I+KEI  RGLE+N A+YNYRI R+CKN ECARAKK+LDEM+SKGVKPNSSSYD+IIH
Sbjct: 236 FDEIMKEILNRGLEFNIATYNYRISRLCKNKECARAKKILDEMISKGVKPNSSSYDSIIH 295

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GY +VGDIE A K+LK MLEDGHVSP+SRIY+ LIRSMVKEGEF     TCR+++KRRWV
Sbjct: 296 GYCDVGDIESAMKILKGMLEDGHVSPTSRIYFRLIRSMVKEGEFDLALDTCRQMLKRRWV 355

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFE ME LVRGLV +SKVEEAKE+VEKMKK LKGPA+DSW KIEA L+L
Sbjct: 356 PPFETMEALVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWRKIEATLAL 405

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy TrEMBL
Match: A0A1S3B7X6 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486977 PE=4 SV=1)

HSP 1 Score: 468 bits (1204), Expect = 4.43e-163
Identity = 229/290 (78.97%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS  GMV QA+  LDQ IL+KPC+LSEKSLCA+LSVYL+NSMPEKVHEMFR+ PEKIG
Sbjct: 116 MLYSSVGMVSQALHILDQAILHKPCNLSEKSLCAILSVYLDNSMPEKVHEMFRSTPEKIG 175

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPTV+SHNLVLKAFV+QNDL SARNWIDELYKDDAKV+PNIDSY ILLGAYW+ GD+VG
Sbjct: 176 VTPTVISHNLVLKAFVRQNDLPSARNWIDELYKDDAKVIPNIDSYTILLGAYWSNGDMVG 235

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FD I+KEI  RGLE+N A+YNYRI R+CKN ECARAKK+LDEM+SKGVKPNSSSYD+IIH
Sbjct: 236 FDEIMKEILNRGLEFNIATYNYRISRLCKNKECARAKKILDEMISKGVKPNSSSYDSIIH 295

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GY +VGDIE A K+LK MLEDGHVSP+SRIY+ LIRSMVKEGEF     TCR+++KRRWV
Sbjct: 296 GYCDVGDIESAMKILKGMLEDGHVSPTSRIYFRLIRSMVKEGEFDLALDTCRQMLKRRWV 355

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFE ME LVRGLV +SKVEEAKE+VEKMKK LKGPA+DSW KIEA L+L
Sbjct: 356 PPFETMEALVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWRKIEATLAL 405

[Close]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy TrEMBL
Match: A0A0A0LF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824840 PE=4 SV=1)

HSP 1 Score: 465 bits (1196), Expect = 7.29e-162
Identity = 231/290 (79.66%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG 60
           MLYS  GMV+QA+  LDQ IL+K C+LSEKSLCA+LSV+L+NSMPEKVHEMFR+IPEKIG
Sbjct: 116 MLYSSVGMVNQALYILDQAILHKSCNLSEKSLCAILSVFLDNSMPEKVHEMFRSIPEKIG 175

Query: 61  VTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVG 120
           VTPT VSHNLVLKAFV+QNDL SARNWIDEL KDDAKV+PNIDS+ ILLGAYW+ GD++G
Sbjct: 176 VTPTAVSHNLVLKAFVRQNDLPSARNWIDELCKDDAKVIPNIDSFTILLGAYWSNGDMIG 235

Query: 121 FDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIH 180
           FD I KEISKRGLE+N A+YNYRI R+CKN ECARAKK+LDEM+SKGVKPNSSSYD+IIH
Sbjct: 236 FDEIEKEISKRGLEFNLATYNYRISRLCKNKECARAKKILDEMISKGVKPNSSSYDSIIH 295

Query: 181 GYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRWV 240
           GY +VGDIE A K+LK +LEDGHVSP+SRIYY LIRSMVKEGEF     TCRE IKRRWV
Sbjct: 296 GYCDVGDIESAMKILKGILEDGHVSPTSRIYYRLIRSMVKEGEFEMALETCRETIKRRWV 355

Query: 241 PPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 285
           PPFEAME LVRGLV +SKVEEAKE+VEKMKK LKGPA+DSW KIEAAL L
Sbjct: 356 PPFEAMEALVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWRKIEAALPL 405

[Close]

BLAST of Cp4.1LG03g08190.1 vs. TAIR 10
Match: AT1G61870.1 (pentatricopeptide repeat 336 )

HSP 1 Score: 148.7 bits (374), Expect = 7.3e-36
Identity = 91/293 (31.06%), Postives = 163/293 (55.63%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRT---LDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPE 60
           +LY+ + M+D ++R    L++  +++    + KSL A+L   L     ++   ++  +P+
Sbjct: 124 VLYAQANMLDHSLRVFRDLEKFEISR----TVKSLNALLFACLVAKDYKEAKRVYIEMPK 183

Query: 61  KIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYW--NK 120
             G+ P + ++N ++K F +     S+ + + E+ +   K  PN  S+ +++  ++  +K
Sbjct: 184 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIK--PNSSSFGLMISGFYAEDK 243

Query: 121 GDLVGFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSY 180
            D VG   ++  +  RG+    ++YN RI  +CK  +   AK +LD M+S G+KPN+ +Y
Sbjct: 244 SDEVG--KVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTY 303

Query: 181 DAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREII 240
             +IHG+ N  D E A K+ K M+  G   P S  Y+ LI  + K G+F      C+E +
Sbjct: 304 SHLIHGFCNEDDFEEAKKLFKIMVNRG-CKPDSECYFTLIYYLCKGGDFETALSLCKESM 363

Query: 241 KRRWVPPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAAL 284
           ++ WVP F  M+ LV GL   SKVEEAKE++ ++K+      ++ W ++EAAL
Sbjct: 364 EKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFT-RNVELWNEVEAAL 406

[Close]

BLAST of Cp4.1LG03g08190.1 vs. TAIR 10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-31
Identity = 80/293 (27.30%), Postives = 160/293 (54.61%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRT---LDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPE 60
           +LY  + M+D++I+T   L+Q  + +    + KSL A+L   L     ++ + ++  +P+
Sbjct: 119 ILYGRANMLDRSIQTFRNLEQYEIPR----TVKSLNALLFACLMAKDYKEANRVYLEMPK 178

Query: 61  KIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGD 120
             G+ P + ++N +++   +     S+ + + E+ +   K  P   S+ +++  ++ +  
Sbjct: 179 MYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIK--PTAASFGLMIDGFYKEEK 238

Query: 121 LVGFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDA 180
                 +++ + + G+    A+YN  I  +CK  + A AK ++D ++S  ++PNS +Y  
Sbjct: 239 FDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSL 298

Query: 181 IIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKR 240
           +IHG+ +  +++ A  + + M+ +G+  P S  Y+ LI  + K G+F      CRE +++
Sbjct: 299 LIHGFCSEENLDEAMNLFEVMVCNGY-KPDSECYFTLIHCLCKGGDFETALILCRESMEK 358

Query: 241 RWVPPFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 286
            WVP F  M+ LV GL   SKV+EAKE++  +K+      +D W ++EAAL L
Sbjct: 359 NWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFT-RNVDLWNEVEAALPL 403

[Close]

BLAST of Cp4.1LG03g08190.1 vs. TAIR 10
Match: AT3G13150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 9.5e-28
Identity = 77/271 (28.41%), Postives = 146/271 (53.87%), Query Frame = 0


Query: 1   MLYSGSGMVDQAIRTLDQV-ILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKI 60
           +LY  SGM + A +  D++  LN  C+ + KS  A+LS Y+N+   ++  + F+ +PEK+
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELN--CERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKL 189

Query: 61  GVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLV 120
           G+TP +V++N ++KA  ++  ++   +  +EL K+  +  P++ S+N LL  ++ +   V
Sbjct: 190 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFE--PDLISFNTLLEEFYRRELFV 249

Query: 121 GFDGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAII 180
             D I   +  + L  N  SYN R+  + +N +   A  ++D M ++G+ P+  +Y+A+I
Sbjct: 250 EGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALI 309

Query: 181 HGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEF-----TCREIIKRRW 240
             Y    ++E   K    M E G ++P +  Y  LI  + K+G+         E IK + 
Sbjct: 310 TAYRVDNNLEEVMKCYNEMKEKG-LTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKL 369

Query: 241 VPPFEAMEGLVRGLVGISKVEEAKEIVEKMK 266
           +      + +V  L+G  K++EA ++V+  K
Sbjct: 370 LSRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

[Close]

BLAST of Cp4.1LG03g08190.1 vs. TAIR 10
Match: AT1G55890.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-24
Identity = 75/269 (27.88%), Postives = 140/269 (52.04%), Query Frame = 0


Query: 2   LYSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGV 61
           LY  +GM + A +  ++ + N+ C  S  S  A+LS Y  +   + V E+F  +P K+ +
Sbjct: 118 LYGKAGMFENAQKVFEE-MPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSI 177

Query: 62  TPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGF 121
            P +VS+N ++KA  +++ L  A   +DE+     K  P+I ++N LL + + KG     
Sbjct: 178 KPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLK--PDIVTFNTLLLSSYLKGQFELG 237

Query: 122 DGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIHG 181
           + I  ++ ++ +  +  +YN R+L +    +      +  E+ + G+KP+  S++A+I G
Sbjct: 238 EEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRG 297

Query: 182 YGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLIRSMVKEGEFTC-----REIIKRRWVP 241
             N G ++ A    K +++ G+  P    +  L+ +M K G+F       +E   +R++ 
Sbjct: 298 SINEGKMDEAEAWYKEIVKHGY-RPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLV 357

Query: 242 PFEAMEGLVRGLVGISKVEEAKEIVEKMK 266
               ++ LV  LV  SK EEA+EIV+  K
Sbjct: 358 GQTTLQQLVDELVKGSKREEAEEIVKIAK 382

[Close]

BLAST of Cp4.1LG03g08190.1 vs. TAIR 10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-23
Identity = 75/289 (25.95%), Postives = 149/289 (51.56%), Query Frame = 0


Query: 3   YSGSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIG-V 62
           Y  + M + A+RT +Q+        S  S  A+L+  L++   +KV ++F  IP++   +
Sbjct: 112 YGQASMFNHAMRTFEQMD-QYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKI 171

Query: 63  TPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGF 122
            P  +S+ +++K++      E A   + ++     +V     ++  +L + + KG+L   
Sbjct: 172 IPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEV--TTIAFTTILSSLYKKGELEVA 231

Query: 123 DGIVKEISKRGLEYNFASYNYRILRMCKNMECARAKKMLDEMVSKGVKPNSSSYDAIIHG 182
           D +  E+ K+G E + A+YN RI+   K     R K++++EM S G+KP++ SY+ ++  
Sbjct: 232 DNLWNEMVKKGCELDNAAYNVRIMSAQKESP-ERVKELIEEMSSMGLKPDTISYNYLMTA 291

Query: 183 YGNVGDIELATKVLKSMLEDGHVSPSSRIYYGLI-----RSMVKEGEFTCREIIKRRWVP 242
           Y   G ++ A KV +  LE  + +P++  +  LI       + ++G    ++ +    +P
Sbjct: 292 YCERGMLDEAKKVYEG-LEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIP 351

Query: 243 PFEAMEGLVRGLVGISKVEEAKEIVEKMKKMLKGPAMDSWGKIEAALSL 286
            F  ++ LV GLV   K ++AK ++  +KK      +++W K+E  L L
Sbjct: 352 DFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g08190.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LE47	1.0e-34	31.06	Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidop...	[more]
Q9SAB4	9.9e-30	27.30	Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidop...	[more]
Q9LK58	1.3e-26	28.41	Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX...	[more]
Q9LG23	4.0e-23	27.88	Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidop...	[more]
Q9M065	4.5e-22	25.95	Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG03g08190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983790.1	1.62e-190	94.74	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
XP_022983789.1	5.27e-188	93.10	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
XP_038906046.1	4.24e-171	83.79	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Benin...	[more]
XP_008443376.1	9.15e-163	78.97	PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-...	[more]
XP_004136798.1	1.51e-161	79.66	pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucumis sa...	[more]

BLAST of Cp4.1LG03g08190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6X0	7.83e-191	94.74	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
A0A6J1J8H6	2.55e-188	93.10	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
A0A5A7UGZ0	4.43e-163	78.97	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B7X6	4.43e-163	78.97	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Cuc...	[more]
A0A0A0LF76	7.29e-162	79.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824840 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g08190.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61870.1	7.3e-36	31.06	pentatricopeptide repeat 336	[more]
AT1G11630.1	7.0e-31	27.30	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G13150.1	9.5e-28	28.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G55890.1	2.9e-24	27.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G36680.1	3.2e-23	25.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 4..154 e-value: 1.6E-21 score: 78.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 163..233 e-value: 1.6E-9 score: 39.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 159..215 e-value: 3.6E-9 score: 36.5 coord: 60..112 e-value: 4.6E-5 score: 23.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 174..204 e-value: 2.5E-6 score: 25.3 coord: 139..172 e-value: 4.1E-4 score: 18.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 9.273317
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 171..205 score: 10.413293
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 1..283
None	No IPR available	PANTHER	PTHR46128:SF264	REPEAT 336, PUTATIVE-RELATED	coord: 1..283

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g08190	Cp4.1LG03g08190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g08190.1:exon:001	Cp4.1LG03g08190.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g08190.1:cds:001	Cp4.1LG03g08190.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g08190.1	Cp4.1LG03g08190.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding