Cp4.1LG03g06830.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g06830.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	Cp4.1LG03: 3703599 .. 3706282 (-)
Sequence length	992
RNA-Seq Expression	Cp4.1LG03g06830.1
Synteny	Cp4.1LG03g06830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAATTAAAAGAAAAATGGATTGGGAAACTTATCCACAAACGCTAGAAGAGATGGAGAGGAGATGATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCAAAACCACCGCCGCCAAAGCCCCTTCAGCCCCTCATTGCGTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTCCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCGCTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGTGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGTCTGTTTCTAAAATTTCTTGTGGTTTCTTTTGGGATTTGTGTTTTTGGTTGTGAATTCTGTGATTGTTTGTTTGGATTTTGATTTATTGTGATTCTTCTCCTTGAATTGTTTGCGATTTTTGCTCTGTCGTTTTTTTCTTTCAGTGTTGAATTTGATTGCTAGGAAGGTAACCTGTTAGATGTATGAGAGAAAAGTACCTTAAATCGTTGGCCTCATTAATATTGATTCTTCTTCAGTCCTCGTTAAGCTTAGCTTCCCTCGCTTCCCTTTTCCAATGGCTACCAAGTGTTTAGTGTTTATCGTTAGCACGATAACTAGTACACTAGAGGTGCGTCCTTCCGACGGTTTTTATACTGTGGTTACTAAGAGACATGCAGATTTTTGAATCTATATTCAATAGTTATTACGAGGTAGCTAACCTTGTTGAACGATTGGTCCAAGAGTAAGAACATATTCTTGAAAAGGTGTATATCTTTGCCAATACGAACAGGGTGTAGTGTACGAAAAGGTTGTTTGAACTTGCCCCATGACGAAGCGAAAATAACTACTCGGTAAAGGACGGAGAGTCTTGCTGCTTGTCGTTGAAAATGCGATTATTGCATTCTAAACCATCTACTCTATAGAAAACTCCTCGTAAAGAATGTTTTGTTTTCCTCTCCAACCGACGTAGAATCTCACAATCCACCTCATTCAGGGTCCAATGTCCTCTCTGGCACTCGTTCTCTTCTCCAATTGATGTGGGACCCTCTAATCCATTCCCGACTGCCTTGTGTCCACCTCCCTTCGGTGCTCAATCTTCTCGATGGCACATCGCCCAGTGTCTGGCTCTAATACTATTTGTAGCAGCCCAAGCCCACCATTAGTAGATATTGTTCTCTTTGGGCTTTCTCGTTCGAGTTTCTCCCTCAAGGTTTTTAAAATACGTTTGCTAGGGAGAGGTTTCTACACCCTTAAGAATGCTTCGTTCTCCTCTCCAACCAATGTGGGATCTCGCATAGATAAAGCGCTAGAATTCATTTGCAAAGGAACAGCTACTGAATAGGTGAATTTTGAGTTTCCATATTCCCCATGCATAATAAGGGACAGCTAATGCTTTCTCTGTAGGACAACCTGAGTATTGACGTTGGAATAGCTTAGCTCCCAAATAAAGAATTTGATCTTTTTGGGATATGAATCACTCCATTTTGTTAAAAGACTCTGGTTCTTCATTTTGGGAGGAAGGTTAACCCAATTGTCGAACCCGGAGAGAATTCCTTCCACACAAGATTGAAGAAAGACCAAACTTGGCAATGAATCTAAGGAGAATCCAACTCACTTATCGATCTCAAAGTACGATTAATCTGCTTATTCGAGTGAACAAAGAAACTCCATGTGTGAGGCCGATGCAACTATAGCTTTTCCGGTTGAGTGCTGAATGCCAACGAGAAGGTGCACCATTTTTTGTTGATTAAGAATGATGAGAGATTTCTTCCTTTTTCGTTTCGTTATTATAGAGAATTTCACTGAACATCTTATATCTCGAAACCAAGTACACCATTACTCGAGATGGAAGATGGCTGTAGAAAAACGTCTTATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAACGTTTGTGATGGAAAAATGGATATCATTTACGTGCTAAGGTGTTTGATGAAACTGAGTTATGATTTGGTTGATGAACAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAACCCAATCCAATCCAATCCAATCCAAAACTTCAGCTTCACCACAATGTTTTAATGTTTTCTGCTCATCTTTTGATTTTGGGAAGCTGTTTGTATTCTGTAATCTAAAGTTGTTTTCCATGTAATATCATCTTTAGTTGACAAGTTTCTTGCAACATTCCTTTTGAATAAGTAGATGTAATTCATTGTGTTTCGATCAAATAATCATTTCTCGACTCGTAAGGTGGAAACATAGCGGGTTGATATTGTCGACTTGATGATTATGCTTCCTAGGGTGTTCTAAAGATCCGGTGACCTTTCTGAGGTTATCGTACGAGACGTATATATAATCAAC

mRNA sequence

CGAAATTAAAAGAAAAATGGATTGGGAAACTTATCCACAAACGCTAGAAGAGATGGAGAGGAGATGATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCAAAACCACCGCCGCCAAAGCCCCTTCAGCCCCTCATTGCGTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTCCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCGCTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGTGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAACCCAATCCAATCCAATCCAATCCAAAACTTCAGCTTCACCACAATGTTTTAATGTTTTCTGCTCATCTTTTGATTTTGGGAAGCTGTTTGTATTCTGTAATCTAAAGTTGTTTTCCATGTAATATCATCTTTAGTTGACAAGTTTCTTGCAACATTCCTTTTGAATAAGTAGATGTAATTCATTGTGTTTCGATCAAATAATCATTTCTCGACTCGTAAGGTGGAAACATAGCGGGTTGATATTGTCGACTTGATGATTATGCTTCCTAGGGTGTTCTAAAGATCCGGTGACCTTTCTGAGGTTATCGTACGAGACGTATATATAATCAAC

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCAAAACCACCGCCGCCAAAGCCCCTTCAGCCCCTCATTGCGTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTCCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCGCTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGTGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIPY

Homology

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36
Identity = 94/186 (50.54%), Postives = 121/186 (65.05%), Query Frame = 0


Query: 2   ASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQ----AP 61
           +SL +F S L PS    P    P   +P+          +L S+  S+++S ++    A 
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPN----------SLSSQQNSISISSKKHENAAI 64

Query: 62  KHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 121
              E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQ
Sbjct: 65  AKKEEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQ 124

Query: 122 ECKRRKFFENPHDVKKRKSREAAKRNRRRR--PQQRFTPQDKQDVPATKQEADDDNWDLP 181
           ECKRR++FEN  + KKRK REAAKRN RRR  P +   P  ++     K+E D DNWD+P
Sbjct: 125 ECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMP 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRR 147
           V V +NEP E  L RF+R   +AGV+ E +RR+F+E P +++KRK+  A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.0e-05
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 90  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRRR 148
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE P +  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-05
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRR--RP 150
           V V +NEP E  L RF+R   +AGV+ E +RR+++E P  V+KRK   A KR+ +R  R 
Sbjct: 4   VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREYYEKPTQVRKRKQAAAVKRHMKRLNRE 63

Query: 151 QQR 152
           QQR
Sbjct: 64  QQR 66

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy Swiss-Prot
Match: B0CE36 (30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 89  VQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRRR 148
           VQV++ ++E  E  L RF+R+V +AG++ + KRR+ FE P + KKRK R A +R RR R
Sbjct: 2   VQVVLGEDEGIESALRRFKRQVSKAGILADVKRRRHFETPLEKKKRK-RIATRRKRRFR 59

[Close]

BLAST of Cp4.1LG03g06830.1 vs. NCBI nr
Match: XP_023527532.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348 bits (894), Expect = 8.23e-121
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. NCBI nr
Match: XP_022982709.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 348 bits (893), Expect = 1.17e-120
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. NCBI nr
Match: KAG6581093.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345 bits (886), Expect = 1.36e-119
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQA KHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. NCBI nr
Match: XP_022934586.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 345 bits (886), Expect = 4.06e-119
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQA KHS
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

[Close]

BLAST of Cp4.1LG03g06830.1 vs. NCBI nr
Match: KAG7017820.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343 bits (880), Expect = 2.70e-118
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAA QFQTLKSRDGSVALSPQQA KHS
Sbjct: 26  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHS 85

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 86  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 145

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 146 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 205

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 348 bits (893), Expect = 5.66e-121
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy TrEMBL
Match: A0A6J1F281 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441722 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 1.97e-119
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQA KHS
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 2.62e-106
Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60
           MASLSSFFSFLLPSKPPPPKP QPLIAS PSP N AAAQFQTLKSRDGSVAL PQQ P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEE-G 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE  
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 311 bits (798), Expect = 9.73e-106
Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60
           MASLSSFFSFLLPSKPPPPKP QPLIAS PSP N AAAQFQTLKSRDGSVAL PQQ P H
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEG- 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE  
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

[Close]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 1.45e-103
Identity = 162/182 (89.01%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60
           MASLSSFFSFLLPSKPPPPKP QP IAS PSP+N AA QFQTLKSRDGSVAL+PQQ P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

[Close]

BLAST of Cp4.1LG03g06830.1 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 157.9 bits (398), Expect = 7.6e-39
Identity = 92/186 (49.46%), Postives = 128/186 (68.82%), Query Frame = 0


Query: 3   SLSSFFSFLLP----SKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPK 62
           SL+SF SF+ P    +KP PP    P +  PSP        Q  ++     +++ ++   
Sbjct: 6   SLTSFISFISPFKSQTKPTPP----PNLTLPSPTIS-----QRRRNDLAIESMAVEETSS 65

Query: 63  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 122
            +  LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQE
Sbjct: 66  TASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQE 125

Query: 123 CKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPAT----KQEADDDNWDL 181
           CKRR++FEN  D KKR++R+AAKRN++RRPQ RFT + +++  A     K++ ++DNW++
Sbjct: 126 CKRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEM 182

[Close]

BLAST of Cp4.1LG03g06830.1 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 73/189 (38.62%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           + SLS   S LL SKPP P  L+P I  PS  +   +Q  ++ ++            +H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTK--------ILTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDV-----PATKQEADDDNWDL 180
           +RR+FFE+  + K RK++EAAK+ R+RRP  +  P    ++      A++++  DD+W+L
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWEL 181

Query: 181 PEEG--IPY 182
           P E   IPY
Sbjct: 186 PPEDIEIPY 181

[Close]

BLAST of Cp4.1LG03g06830.1 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-17
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           + SLS   S LL SKPP P  L+P I  PS  +   +Q  ++ ++            +H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTK--------ILTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRR 147
           +RR+FFE+  + K RK++EAAK+ R+R
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g06830.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	4.5e-36	50.54	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
B8GPU0	4.1e-05	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]
P48949	7.0e-05	46.55	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
A1WW12	9.1e-05	47.62	30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=...	[more]
B0CE36	1.6e-04	47.46	30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of Cp4.1LG03g06830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527532.1	8.23e-121	100.00	30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982709.1	1.17e-120	99.45	30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]	[more]
KAG6581093.1	1.36e-119	99.45	30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022934586.1	4.06e-119	99.45	30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]	[more]
KAG7017820.1	2.70e-118	98.90	30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Cp4.1LG03g06830.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5C2	5.66e-121	99.45	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F281	1.97e-119	99.45	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3C287	2.62e-106	91.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	9.73e-106	91.26	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
A0A0A0LDL7	1.45e-103	89.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g06830.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	7.6e-39	49.46	Ribosomal protein S21 family protein	[more]
AT5G63300.1	1.4e-21	38.62	Ribosomal protein S21 family protein	[more]
AT5G63300.2	6.3e-17	40.82	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 92..100 score: 42.59 coord: 112..122 score: 38.64 coord: 124..134 score: 39.39 coord: 100..109 score: 43.33
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 90..144 e-value: 7.7E-20 score: 70.4
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 89..146 e-value: 1.1E-14 score: 51.9
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..181
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 88..144 score: 14.617466
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 103..141 e-value: 3.8E-13 score: 50.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..181
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g06830	Cp4.1LG03g06830	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06830.1:three_prime_utr:001	Cp4.1LG03g06830.1:three_prime_utr:001	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06830.1:exon:002	Cp4.1LG03g06830.1:exon:002	exon
Cp4.1LG03g06830.1:exon:001	Cp4.1LG03g06830.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06830.1:cds:002	Cp4.1LG03g06830.1:cds:002	CDS
Cp4.1LG03g06830.1:cds:001	Cp4.1LG03g06830.1:cds:001	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06830.1:five_prime_utr:001	Cp4.1LG03g06830.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06830.1	Cp4.1LG03g06830.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome