CmoCh20G005260.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G005260.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 2535908 .. 2538905 (-)
Sequence length378
RNA-Seq ExpressionCmoCh20G005260.1
SyntenyCmoCh20G005260.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGACAAGGATTGAGCAATAGTTGTGAAGAAGATTGTCGAATTCCTTGCTGTGATGCGACATGTCGGTAATGACGTTGCTACTTCACCCAACACTCTCTCTGCAGCAGCTGCAAGCTTCAGCTCCTTCTTTAGCCCTTCATCCCAAACAGCGTTAATGGCCATGAATTTGTTCTGTCGCAAAGCCTGTCGGTGTGGTCGTATTATCCCATGTTCCCCAAAACTCCTGCCTTCCCTTCTTTAATTGCTGTTACTTTGCCCAAATGCTTTGCATAAACTCACCTTCTTACCTTGCTTCCCTGTCCCTGTATTGTGTTTTTTTAGTGGGTTACAGCAAATGTGGAGGGCTTCCATACGATAATATGTTATTGTTTAATACTCTGAGATCCAACCTGAGATACCACATAGGTTGGAGACGGAAACGAAGCGTTCACACGTTTTAAAATTATGAGGCTGATGATTATATGTAACGGGCTAGAGCGGACAATATCTACTAACCGTGGACTTTGGCTATTATAAATGATACTAGAGGTAGACACCGAGCGGTGTGTCAGTGAGGACGCTAGCTCCCAAAAGGGTGGATTGTGAGATCCGACGTTGGTTGGAGAGGAGAATGAAATATTTCTTATAAGGATGTGAAAACTTCTCCCTAGTTGACGTTGGCTCCCAAGGGGAGGTAGATTGTGATGCTGACGGCGATACATAATCAGCCAAAGCAAACAATATTTACTAACCGTGGACTTGAGTTATTACAAATGTACCAAAGCGAGACACCAAAATTGTGAAGCTGATGATGATTCGTAACTGGCCAAAACAAACAATATCTACTAACGGTGGGCTTAAACTATTACAGGTGGTATCAGAGTTGGATATTAAGGCAATATGCCAGCGAGGAAACTAGCCTCTAAAGGAGATGGATTGTGAGATCTCACGACGACCCTACGTAAATGACTCATATATATATATATAAAAGCATATTTTATCCTTTTTTTTTTATAGTTTATTGAAAATATCATTCAAACTTACAAAATTATATATATATAAATTAAAAAATGGAGTAGTATTTTTATTAATTTAACATAAATTGTATTTGTAAAATTCTAAAATAATTAATATAGTTAATTTTAAAATAATTGTTAAAATTAAATAGTGCAGAAGAGCATATAATACACAAGAATAGTAAAAATTTCCAATTAAAGCATATGAATATTAATTATTATTATTTTTTTAAGACAAATAAAAGGAAACCCATAAATGCACCCAAAAAAAGAAAAAAAAAACATATATTAATAGGAGTAACAAGAATTTTTTTTTTTTCACTTTATAATTTCAAGTAATTAATATAATGCAAAAATTAGAAATGCACTACTTGAATAGGCTTAATAGACTCTCCAATTTAATTCTTTGTGACCAATTAATTTAATATCTATAATTTCAAATTTTAATTTTAATTTTAATTATTCTTATTTAAATATAATATAAAAATGATATTTTTAATAAATGAATATTAAATTACCGAATTACTTAAATATTTGTTGAAGTAGAATTTAGTCTCGTAGATTTAGATAAAAACTCAAGTTGAGAAAATTCAGCACCCTTAGGCCTAGTAGGCGATCGATGGCTTGAATGAATTAAGACCCATTAAGGCAGAGGAATTAAAGGTTGGGGTCAGCTCAACCCAAACCCTTTAAGAGTTTGCCTCTCGAATGGTCAACCCAAAACACCTAGAGGTCAGCTTAACGCGTTTGAAAACAACGTTTTTAGAATTAATCTAGTCTCGAATGGTCACTATGTATAGGGACTGCTTGGTGTTACACGAGGAAAATAAATTTAAATCTCAAATAGTCAAATGTTTGTTGGGATGTTATTAGACAAGTTTAAGGCTAACCTAAGTTGTCTCTATTAAATTTTATAGAGTTAAAAATAAAGTTATAGATATTAATTATATAAATTTAGAGTAACATTATCAAAATCCTTACCGTGCATCTAAAATTTTCACTATTTCAATATTAAATAGAAAAATTTTATATATTAAAACTGATGGGCCAACTTGAAAACTCGAAGACCTAATTGTAACAACGATCCTATAATTTATAATTCATAGTCAATATTGAAAATTTCCTTAAAAAAAATAATATGAAATATTTGAAAGTATGATTAAAATGGGTAAAAAAAGAAAATAGAAATTGGAGAACGAAAAAGAAAATAAATGGAGTTATTGAGACCAGGAGCGCGTAGAGAAAAAAGACGAGGTGGGGCACACGCCCTAAAAGAATGAAAAGAAGAATAAACTAAAAAAGAACCCTCGAGGTCAAAGTTCAAATATAGAGCAATAAACTCAAAAAAAAAAAAATTTAAAATTTTTCGGATTCATTAAACTATATTATAATTAACATATAAATAAAAAATTATTCGATAAGATGTCAAATTATTCTAATTTGAGAGTAAAAAAAAATAAAAAGGTTAAATGAAGCGGGTAAAACAGTAATTGTTTTGATTCACTGTGGCGTTTCTCTTGTAATCGCGCGATACGAAAGGAAACGAACTAATCCAACAAAAACCCTCCTTCCTCCTTCCTCTGTTTTCTTTCACATTGTTTGTTTGGTTATTTTGTTCGTATCCTCCAACCCTGAGAGACCCCTCACTATTTGGGATCTAAACTCATTTCAGCAACCTTCAATTCCACAGATCGCCGCCGGATCATCATCCTTCATTCAATCTTTACCCATTCAGTTTCTTTTCTTTTTCACGAACCAACGCTTCCGCCGCCCTCGATTTCACCGCATCTCTCGAATGCTTTAACAGCAAGAACTGTGGATGGGTCTTTTCTTCTTCCTGTTCTTCCATCTGGGTCTGTTTTGAAATTTCATTTTCTGGGTTGTATTTCGATTATGCAGCTGAACACGCTGAATCTGAGCGTTTTGGGTTTGATTATCGCATTCAGACTCTGAGCTCTTCCCCTGTTCTTCTTTTTCTTCTGCTACTCTTCGAATAG

mRNA sequence

ATGACAAGACAAGGATTGAGCAATAGTTGTGAAGAAGATTGTCGAATTCCTTGCTGTGATGCGACATGTCGATCGCCGCCGGATCATCATCCTTCATTCAATCTTTACCCATTCAGTTTCTTTTCTTTTTCACGAACCAACGCTTCCGCCGCCCTCGATTTCACCGCATCTCTCGAATGCTTTAACAGCAAGAACTGTGGATGGGTCTTTTCTTCTTCCTGTTCTTCCATCTGGGTCTGTTTTGAAATTTCATTTTCTGGGTTGTATTTCGATTATGCAGCTGAACACGCTGAATCTGAGCGTTTTGGGTTTGATTATCGCATTCAGACTCTGAGCTCTTCCCCTGTTCTTCTTTTTCTTCTGCTACTCTTCGAATAG

Coding sequence (CDS)

ATGACAAGACAAGGATTGAGCAATAGTTGTGAAGAAGATTGTCGAATTCCTTGCTGTGATGCGACATGTCGATCGCCGCCGGATCATCATCCTTCATTCAATCTTTACCCATTCAGTTTCTTTTCTTTTTCACGAACCAACGCTTCCGCCGCCCTCGATTTCACCGCATCTCTCGAATGCTTTAACAGCAAGAACTGTGGATGGGTCTTTTCTTCTTCCTGTTCTTCCATCTGGGTCTGTTTTGAAATTTCATTTTCTGGGTTGTATTTCGATTATGCAGCTGAACACGCTGAATCTGAGCGTTTTGGGTTTGATTATCGCATTCAGACTCTGAGCTCTTCCCCTGTTCTTCTTTTTCTTCTGCTACTCTTCGAATAG

Protein sequence

MTRQGLSNSCEEDCRIPCCDATCRSPPDHHPSFNLYPFSFFSFSRTNASAALDFTASLECFNSKNCGWVFSSSCSSIWVCFEISFSGLYFDYAAEHAESERFGFDYRIQTLSSSPVLLFLLLLFE
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh20G005260.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G005260.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G005260.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G005260.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh20G005260CmoCh20G005260gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G005260.1:exon:2282CmoCh20G005260.1:exon:2282exon
CmoCh20G005260.1:exon:2281CmoCh20G005260.1:exon:2281exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G005260.1:cdsCmoCh20G005260.1:cds_2CDS
CmoCh20G005260.1:cdsCmoCh20G005260.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh20G005260.1CmoCh20G005260.1-proteinpolypeptide