CmoCh20G002770.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G002770.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 1347679 .. 1350054 (+)
Sequence length	360
RNA-Seq Expression	CmoCh20G002770.1
Synteny	CmoCh20G002770.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGGTAGCTTCTCTTAAAGTTGAACAATTTTGTGTCTTATCTTATCTGAAATTTTAACGGCGTAATCCATCTTTGATACGTCAATTGCTTACAGGTTTAAGCCATTCAGGTATTGTCACTTGAACCTTAAGGTGCTCAAAGTGTTGTCACTTCTATAAGAAGACGGAAAGGACTAATCCAAATTGCAGATCATCTTACTCCGCAAGCAAATGAGTAAGTCCTATTCGTTTAGAATCAATCTTTTATTTTTCATCTCTCTTTGGTATCGACTAAATGGGCTCTATACTTGCAGATCGCATATTTATGTTATGACTTTATCGAACAAATTGATTTGGGCTTGTTGTGCATACCACTTTTTTTTTCTGTTTTCCATGGATGAGATAGACTAGGCTGCCTCAAATGGTTTCCTCTTATCCTATCTGCTTCTTTATTTTAATTAGACCATCCTTTATTAACCTTGTGGGAAAAGGTATATAGGATTTACTTGTCTCAATTGATTTCCTGGAGTTTAGGAGAACATTATTGTTCGGTAGGAACTCGTTTTTTTACAGTTCCTTATCCACAGAAAAACCAAGCACCCTTGATTGTTTTCCCTCTTGTGCAGAATACACAATATACAAGCACACAACATGAAATCGTATTAGTAGAGCCCAACCATTACTCAAGCCTTGTAATATTAAATCATCCATTTTTCTTCAACTTCATCGTAGAAGGATTTCTTCTCAGTGTTTCTTTGCTTCTTTTTCAGCCTACAAAATCAAGTCTAACAGGATTAACATCATAGATATCTTTAAGTATTATAGCAACAAAATTTGAATATAAATAGAGGCAGCTTACAGCTTTGACAACTCGTTCAAATGCATCGGGTCCATATCTATCGATATAACGCTCCGCAGATTTCCTAGAATCCAGAGTCATCATCTGGAGAACCTTCTTTTGATTCTCTGGATAGTTCGGGTTCACATATCCCCCAATCTTAACATATTTCCTCACTATATTCTCGTAGATATAGGCTGCCCCATTGAAAATTGGTAGAACCAACCATACACAAGCCACGAGCTTAATGTATCCCCAAAGTGGAATCCTGCATGCCATCCCACAGCCTTTAAAATGTAGACTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCTCAAAGAATAGTTTTGTGTATTAAGGACTAGAATTATACCAAACCAGGATTCTCCAAAATGTTAGTTCGAAGAGGGTTATGAGGGAGTATATAACCCAATAACTCAACCATTGCCGGTCATCAAGACTTGAAGGACTCTCAATTGCTCTAATTGATGCATATCTGTTCATTCATATGCATTAACCTTTTATGAATCATCTCTTGCAGCCATGAAAAAGGACACAAGATTTAAATGCAAATGGGTTATGTGCACTTACAAAGGAAAAAGAAGCATCACGACAGGCCTGGATCAAGGAGAAGGCTAAATTTGTCAAGCAAGGTAATGATAAACAATGACATAAACAACAAGATATTTGGGTTTTGAAAGTTAAGAGAGACATTCCCCCATAAGATTAGTTTGTACCCAATTATTGTATACAAATGTTTAGCCATAGCTCCAAGAATACCCATCTCTGACGAACTAAATCTTTCTTGTGTCCAGCTGGCAAAACAAACTTTGGAGTATTTGTTCTTTCAAGATGATGAAAATGAAGGAAGAAGGTTGGGTTTATAGGGAAGTGCAATAATTCTGAAGCTGAATAATTAAGCAAGGTAAAGAATGTCTGTCTGTTCCAGCTGTTCTTTACCCGCACTCCAAGCAAAATCCACAAACTTCAAAGGAAGTCGATCAATGGATGGAATGAAACAAAAAGGTAGAAGAATATAAGGTCCTTTCCATGCTTTTCAACCATTCCAACTTGCATTTATAGCCAGAAAAGGTTTGTAGGTATATACCTTCCCTTTCTTCTCTTTCCTTTTTGCCTTCCGAGTCTGAATTTTGTTCCTTCCTCGACTTTATCTAGCTAAATCTTATAATTATAGCTACGTCGTACAGGTCATTACTACATCAAATTTTCATTCAATATCCTAAGTTTTGAAACATTAGAGTAATATTGTGATTTTTGAAGTAATAGAAGTACGATAATACATGATTATTTGATTCATTGCTTACTTAAATGTGTCCCAAGTTAATTGTGTTTTACTTTTACTTGTTTTTTCTTCAATATTCAATGTTCATATTGATGTTTGAATCCAGTAAAAGAATCTTCGAACTTTTATCTTTGTGAAATTACTGTGGTGAAGAATGCTTCTGCAATTGGGTCTCAGTGCATAAATAATGGGATGGCGATTGAAAAGGAATGGGCTTGGATAGCCAATCCAAAGATTCGATCTTGA

mRNA sequence

ATGTATGTGGCTGCCCCATTGAAAATTGGTAGAACCAACCATACACAAGCCACGAGCTTAATGTATCCCCAAAGTGGAATCCTGCATGCCATCCCACAGCCTTTAAAATGTAGACTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCTCAAAGAATAGAAAAAGAAGCATCACGACAGGCCTGGATCAAGGAGAAGGCTAAATTTGTCAAGCAAGTAAAAGAATCTTCGAACTTTTATCTTTGTGAAATTACTGTGGTGAAGAATGCTTCTGCAATTGGGTCTCAGTGCATAAATAATGGGATGGCGATTGAAAAGGAATGGGCTTGGATAGCCAATCCAAAGATTCGATCTTGA

Coding sequence (CDS)

ATGTATGTGGCTGCCCCATTGAAAATTGGTAGAACCAACCATACACAAGCCACGAGCTTAATGTATCCCCAAAGTGGAATCCTGCATGCCATCCCACAGCCTTTAAAATGTAGACTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCTCAAAGAATAGAAAAAGAAGCATCACGACAGGCCTGGATCAAGGAGAAGGCTAAATTTGTCAAGCAAGTAAAAGAATCTTCGAACTTTTATCTTTGTGAAATTACTGTGGTGAAGAATGCTTCTGCAATTGGGTCTCAGTGCATAAATAATGGGATGGCGATTGAAAAGGAATGGGCTTGGATAGCCAATCCAAAGATTCGATCTTGA

Protein sequence

MYVAAPLKIGRTNHTQATSLMYPQSGILHAIPQPLKCRLEEEEEEEEEEEPQRIEKEASRQAWIKEKAKFVKQVKESSNFYLCEITVVKNASAIGSQCINNGMAIEKEWAWIANPKIRS

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh20G002770.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G002770.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G002770.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G002770.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh20G002770	CmoCh20G002770	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G002770.1:exon:4650	CmoCh20G002770.1:exon:4650	exon
CmoCh20G002770.1:exon:4649	CmoCh20G002770.1:exon:4649	exon
CmoCh20G002770.1:exon:4648	CmoCh20G002770.1:exon:4648	exon
CmoCh20G002770.1:exon:4647	CmoCh20G002770.1:exon:4647	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G002770.1:cds	CmoCh20G002770.1:cds	CDS
CmoCh20G002770.1:cds	CmoCh20G002770.1:cds_2	CDS
CmoCh20G002770.1:cds	CmoCh20G002770.1:cds_3	CDS
CmoCh20G002770.1:cds	CmoCh20G002770.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh20G002770.1	CmoCh20G002770.1-protein	polypeptide