CmoCh19G002130.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002130.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAC domain-containing protein
Location	Cmo_Chr19: 1429586 .. 1430233 (+)
Sequence length	558
RNA-Seq Expression	CmoCh19G002130.1
Synteny	CmoCh19G002130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCATGATCGCCCTCTCTTGCCTGTGGGAGTCAGATTCAGACCTACTGATCAACAACTTCTTCAATATCTACATTGGAAGATTCACGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGATATGGAGCCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGTGCATATGAACCGTAAGATCGGCTTGGCCAACGGTACATGGAGTGGCGAGAATCGGCTGATCCAATTTTTGCTACCAAAACCGATAAAACAATAATCGGCTATCGCAAACGCTTTAGGTTCATTCCATCATTTTGATTTCAATTTTTGTTTTAACCTTATGCTTGTGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGGTACGAGAATGCCCAATTGCCGGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGGGCCGGAACTTAGTAAGAGAAGAATGACCACCTGA

mRNA sequence

ATGGATTCTCATGATCGCCCTCTCTTGCCTGTGGGAGTCAGATTCAGACCTACTGATCAACAACTTCTTCAATATCTACATTGGAAGATTCACGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGATATGGAGCCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGTGCATATGAACCATCGGCTTGGCCAACGGTACATGGAGTGGCGAGAATCGGCTGATCCAATTTTTGCTACCAAAACCGATAAAACAATAATCGGCTATCGCAAACGCTTTAGGTACGAGAATGCCCAATTGCCGGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGGGCCGGAACTTAGTAAGAGAAGAATGACCACCTGA

Coding sequence (CDS)

ATGGATTCTCATGATCGCCCTCTCTTGCCTGTGGGAGTCAGATTCAGACCTACTGATCAACAACTTCTTCAATATCTACATTGGAAGATTCACGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGATATGGAGCCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGTGCATATGAACCATCGGCTTGGCCAACGGTACATGGAGTGGCGAGAATCGGCTGATCCAATTTTTGCTACCAAAACCGATAAAACAATAATCGGCTATCGCAAACGCTTTAGGTACGAGAATGCCCAATTGCCGGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGGGCCGGAACTTAGTAAGAGAAGAATGACCACCTGA

Protein sequence

MDSHDRPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPELSKRRMTT

Homology

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy Swiss-Prot
Match: Q9C8W9 (NAC domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=NAC030 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 49/166 (29.52%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLR-- 60
           MD+  +  +P G RF PT+++L+  YL  KI+        +++ DLY  MEPW+I  R  
Sbjct: 1   MDNIMQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLY-KMEPWDIQARCK 60

Query: 61  FGGTDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYR 120
            G  +  + YFF+   R      R     N      +  W+ +     A  +  ++IG R
Sbjct: 61  LGYEEQNEWYFFSHKDRKYPTGTR----TNRATAAGF--WKATGRD-KAVLSKNSVIGMR 120

Query: 121 KRFRYENAQLPE-HHGEWIMHEYSLHQDSIQQAVDSDYVLCR-FKK 162
           K   Y   + P     +WIMHEY L    +    +  +V+CR F+K
Sbjct: 121 KTLVYYKGRAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRK 158

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy Swiss-Prot
Match: Q9LS24 (NAC domain-containing protein 96 OS=Arabidopsis thaliana OX=3702 GN=NAC096 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 49/164 (29.88%), Postives = 70/164 (42.68%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLR-FGGTDGEDL 68
           LP G RF PTD++L++ YL  K+ G       +   DLY   +PWE+  + F      + 
Sbjct: 6   LPPGFRFHPTDEELIEYYLKRKVEGLEIELEVIPVIDLY-SFDPWELPDKSFLPNRDMEW 65

Query: 69  YFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQ 128
           YFF    +   N  R +       G +   W+ +      T    +IIGYRK   +   +
Sbjct: 66  YFFCSRDKKYPNGFRTN------RGTKAGYWKATGKDRKITSRSSSIIGYRKTLVFYKGR 125

Query: 129 LP-EHHGEWIMHEYSLHQDSIQQA---VDSDYVLCRFKKNERLK 167
            P      WIMHEY L  D   Q    +   +VLCR      +K
Sbjct: 126 APLGDRSNWIMHEYRLCDDDTSQGSQNLKGAFVLCRVAMKNEIK 162

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy Swiss-Prot
Match: F4JN35 (Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 52/155 (33.55%), Postives = 74/155 (47.74%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGDMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+    EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQ 128
           +FF    R   N  R     N      Y  W+ +     + K+ KT+IG +K   +   +
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATDSGY--WKATGKD-RSIKSKKTLIGMKKTLVFYRGR 128

Query: 129 LPE-HHGEWIMHEY--SLHQDSIQQAVDSDYVLCR 159
            P+     WIMHEY  +L          S YVLCR
Sbjct: 129 APKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCR 155

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy Swiss-Prot
Match: A0A3Q7HH64 (NAC domain-containing protein JA2L OS=Solanum lycopersicum OX=4081 GN=JA2L PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.4e-10
Identity = 60/192 (31.25%), Postives = 91/192 (47.40%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLR-- 60
           MD   +  LP G RF PTD++LL QYL  K+ G  +  + + + DLY   +PW +  +  
Sbjct: 6   MDPLTQLSLPPGFRFYPTDEELLVQYLCRKVAGHDFSLQIIAEIDLY-KFDPWVLPSKAI 65

Query: 61  FGGTDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTI---- 120
           FG    ++ YFF+   R   N  R     N   G  Y  W+       AT TDK I    
Sbjct: 66  FG---EKEWYFFSPRDRKYPNGSR----PNRVAGSGY--WK-------ATGTDKVITTDG 125

Query: 121 --IGYRKRFRYENAQLPE-HHGEWIMHEYSLHQDSIQQAVD--SDYVLCR-FKKNERLKR 180
             +G +K   +   + P+     WIMHEY L + + +       D+VLCR +KKN   ++
Sbjct: 126 RKVGIKKALVFYIGKAPKGTKTNWIMHEYRLSEPTTKTGSSRLDDWVLCRIYKKNSGGQK 180

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy Swiss-Prot
Match: Q9SV87 (Protein BEARSKIN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 59/180 (32.78%), Postives = 79/180 (43.89%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLR-- 60
           M S     +P G RF PTD++LL  YL  KI  Q +    + + DL   +EPW++  R  
Sbjct: 1   MGSSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDL-NKLEPWDLQERCK 60

Query: 61  FGGTDGEDLYFFTKLKRS--TNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTI-- 120
            G T   + YFF+   R   T +    + H           W+       AT  DK I  
Sbjct: 61  IGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGF--------WK-------ATGRDKCIRN 120

Query: 121 ----IGYRKRFRYENAQLPEHHG---EWIMHEYSLHQDSIQQAVDSD--YVLCR--FKKN 163
               IG RK   +   + P  HG   +WIMHEY L      QA  S+  +V+CR   KKN
Sbjct: 121 SYKKIGMRKTLVFYKGRAP--HGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKN 162

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 159/186 (85.48%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60
           MDSHD PLLPVGVRFRPTDQQLLQYL WKIHGQPYFKRAVLDCDLYG+MEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEW--RESADPIFATKTDKTIIGYRK 120
           TDGEDLYFFTKLKRSTNNSGRLS H+N ++G     W    SA  IFATKTDKTIIGY K
Sbjct: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120

Query: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPEL 180
           RFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDS+YVLCRFKKNER KRKLQK+LE  +L
Sbjct: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERFKRKLQKDLEEQQL 180

Query: 181 SKRRMT 185
           SK+RMT
Sbjct: 181 SKKRMT 186

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 156/187 (83.42%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60
           MDSHD PLLPVGVRF+PTD QLLQYLHWKIHGQPYFKRAVLDCDLYG+MEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEW--RESADPIFATKTDKTIIGYRK 120
            DGE LYFFTKLKRSTNNSGRLS H+N ++G     W    SA PIFATKTD TIIGY K
Sbjct: 61  IDGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCK 120

Query: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPEL 180
           RFRYEN QLPE HGEWIMHEYSLHQDSIQQAVD DYVLCRFKKNERLKRKLQK+LE  + 
Sbjct: 121 RFRYENVQLPERHGEWIMHEYSLHQDSIQQAVDLDYVLCRFKKNERLKRKLQKDLEEQQH 180

Query: 181 SKRRMTT 186
           SKRRMTT
Sbjct: 181 SKRRMTT 187

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy TrEMBL
Match: A0A6J1HIZ2 (NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 132/151 (87.42%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60
           MDSHDRPLLPVGVRFRPTDQQLLQYL WKIH QPYFKRAVLDCDLYGDMEPWEIWLRFGG
Sbjct: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLLWKIHDQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEW--RESADPIFATKTDKTIIGYRK 120
           TDGE+LYFFTKLKRSTNNSGRLSVH+N ++G     W    SA+PIFA KTDKTIIGY K
Sbjct: 61  TDGENLYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCK 120

Query: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQA 150
           RFRYENAQLPEHHGEWIMHEYSLHQDSIQQA
Sbjct: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQA 151

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy TrEMBL
Match: A0A6J1HXC3 (NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71
Identity = 136/186 (73.12%), Postives = 149/186 (80.11%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60
           MDS +  LLPVGVRFRPTD QLL+YL++KIHG PYFK AVLD DLYG+MEPWEIWLRFGG
Sbjct: 1   MDSRNHSLLPVGVRFRPTDPQLLRYLNFKIHGLPYFKGAVLDGDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEW--RESADPIFATKTDKTIIGYRK 120
             GE LYFFTKLKRSTNNSGRLS H+N ++G     W    S  PIFATKTDK IIGY K
Sbjct: 61  IAGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSGSPIFATKTDKQIIGYCK 120

Query: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPEL 180
            FRYEN QLP+HHGEW MHEYSLHQDSI Q VDSDYVLCR  K+ RLKRKL KNLE  + 
Sbjct: 121 CFRYENIQLPQHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKHGRLKRKLPKNLELQQH 180

Query: 181 SKRRMT 185
           SK+R+T
Sbjct: 181 SKKRIT 186

[Close]

BLAST of CmoCh19G002130.1 vs. ExPASy TrEMBL
Match: A0A6J1HVP9 (NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111467098 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.2e-66
Identity = 121/148 (81.76%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60
           MDSHD PLLPVGVRF+PTD QLLQYLHWKIHGQPYFKRAVLDCDLYG+MEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEW--RESADPIFATKTDKTIIGYRK 120
            DGE LYFFTKLKR TNNSGRLS H+N ++G     W    S  PIFATKTD TIIGY K
Sbjct: 61  IDGEHLYFFTKLKRFTNNSGRLSAHINRKVGLANGTWSGENSGSPIFATKTDNTIIGYCK 120

Query: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSI 147
           RFRYEN QLPE HGEWIMHEYSLHQDSI
Sbjct: 121 RFRYENVQLPERHGEWIMHEYSLHQDSI 148

[Close]

BLAST of CmoCh19G002130.1 vs. TAIR 10
Match: AT2G24430.1 (NAC domain containing protein 38 )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGGTDGEDLY 68
           LP G RF PTD++L+  YL  KI  Q +  +A+ D DL    EPWE+  +     G++ Y
Sbjct: 16  LPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDL-NKSEPWELPEK-AKMGGKEWY 75

Query: 69  FFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQL 128
           FF+   R         V  N      Y +       IF + T + ++G +K   +   + 
Sbjct: 76  FFSLRDRKYPT----GVRTNRATNTGYWKTTGKDKEIFNSTTSE-LVGMKKTLVFYRGRA 135

Query: 129 PEHHGE---WIMHEYSLH-QDSIQQAVDSDYVLCR-FKKNERLKR 168
           P   GE   W+MHEY LH + S + +   ++V+CR FKK E  K+
Sbjct: 136 P--RGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKK 171

[Close]

BLAST of CmoCh19G002130.1 vs. TAIR 10
Match: AT2G24430.2 (NAC domain containing protein 38 )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLRFGGTDGEDLY 68
           LP G RF PTD++L+  YL  KI  Q +  +A+ D DL    EPWE+  +     G++ Y
Sbjct: 16  LPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDL-NKSEPWELPEK-AKMGGKEWY 75

Query: 69  FFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQL 128
           FF+   R         V  N      Y +       IF + T + ++G +K   +   + 
Sbjct: 76  FFSLRDRKYPT----GVRTNRATNTGYWKTTGKDKEIFNSTTSE-LVGMKKTLVFYRGRA 135

Query: 129 PEHHGE---WIMHEYSLH-QDSIQQAVDSDYVLCR-FKKNERLKR 168
           P   GE   W+MHEY LH + S + +   ++V+CR FKK E  K+
Sbjct: 136 P--RGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKK 171

[Close]

BLAST of CmoCh19G002130.1 vs. TAIR 10
Match: AT1G71930.1 (vascular related NAC-domain protein 7 )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 49/166 (29.52%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 1   MDSHDRPLLPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLR-- 60
           MD+  +  +P G RF PT+++L+  YL  KI+        +++ DLY  MEPW+I  R  
Sbjct: 1   MDNIMQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLY-KMEPWDIQARCK 60

Query: 61  FGGTDGEDLYFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYR 120
            G  +  + YFF+   R      R     N      +  W+ +     A  +  ++IG R
Sbjct: 61  LGYEEQNEWYFFSHKDRKYPTGTR----TNRATAAGF--WKATGRD-KAVLSKNSVIGMR 120

Query: 121 KRFRYENAQLPE-HHGEWIMHEYSLHQDSIQQAVDSDYVLCR-FKK 162
           K   Y   + P     +WIMHEY L    +    +  +V+CR F+K
Sbjct: 121 KTLVYYKGRAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRK 158

[Close]

BLAST of CmoCh19G002130.1 vs. TAIR 10
Match: AT5G46590.1 (NAC domain containing protein 96 )

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-11
Identity = 49/164 (29.88%), Postives = 70/164 (42.68%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGDMEPWEIWLR-FGGTDGEDL 68
           LP G RF PTD++L++ YL  K+ G       +   DLY   +PWE+  + F      + 
Sbjct: 6   LPPGFRFHPTDEELIEYYLKRKVEGLEIELEVIPVIDLY-SFDPWELPDKSFLPNRDMEW 65

Query: 69  YFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQ 128
           YFF    +   N  R +       G +   W+ +      T    +IIGYRK   +   +
Sbjct: 66  YFFCSRDKKYPNGFRTN------RGTKAGYWKATGKDRKITSRSSSIIGYRKTLVFYKGR 125

Query: 129 LP-EHHGEWIMHEYSLHQDSIQQA---VDSDYVLCRFKKNERLK 167
            P      WIMHEY L  D   Q    +   +VLCR      +K
Sbjct: 126 APLGDRSNWIMHEYRLCDDDTSQGSQNLKGAFVLCRVAMKNEIK 162

[Close]

BLAST of CmoCh19G002130.1 vs. TAIR 10
Match: AT4G35580.1 (NAC transcription factor-like 9 )

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-11
Identity = 52/155 (33.55%), Postives = 74/155 (47.74%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGDMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+    EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSVHMNHRLGQRYMEWRESADPIFATKTDKTIIGYRKRFRYENAQ 128
           +FF    R   N  R     N      Y  W+ +     + K+ KT+IG +K   +   +
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATDSGY--WKATGKD-RSIKSKKTLIGMKKTLVFYRGR 128

Query: 129 LPE-HHGEWIMHEY--SLHQDSIQQAVDSDYVLCR 159
            P+     WIMHEY  +L          S YVLCR
Sbjct: 129 APKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCR 155

The following BLAST results are available for this feature:

BLAST of CmoCh19G002130.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8W9	2.5e-10	29.52	NAC domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=NAC030 PE=1 ...	[more]
Q9LS24	4.3e-10	29.88	NAC domain-containing protein 96 OS=Arabidopsis thaliana OX=3702 GN=NAC096 PE=1 ...	[more]
F4JN35	5.7e-10	33.55	Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1	[more]
A0A3Q7HH64	7.4e-10	31.25	NAC domain-containing protein JA2L OS=Solanum lycopersicum OX=4081 GN=JA2L PE=2 ...	[more]
Q9SV87	2.8e-09	32.78	Protein BEARSKIN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=2 SV=1	[more]

BLAST of CmoCh19G002130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH13	2.0e-87	85.48	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1HSR6	1.5e-85	83.42	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HIZ2	1.1e-72	87.42	NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 P...	[more]
A0A6J1HXC3	3.5e-71	73.12	NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=...	[more]
A0A6J1HVP9	1.2e-66	81.76	NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]

BLAST of CmoCh19G002130.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24430.1	1.6e-12	32.73	NAC domain containing protein 38	[more]
AT2G24430.2	1.6e-12	32.73	NAC domain containing protein 38	[more]
AT1G71930.1	1.8e-11	29.52	vascular related NAC-domain protein 7	[more]
AT5G46590.1	3.1e-11	29.88	NAC domain containing protein 96	[more]
AT4G35580.1	4.0e-11	33.55	NAC transcription factor-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 10..141 e-value: 2.9E-18 score: 67.0
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 9..162 score: 21.793018
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 18..166 e-value: 2.7E-23 score: 84.4
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 4..160
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 9..170
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 9..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G002130	CmoCh19G002130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G002130.1:exon:7120	CmoCh19G002130.1:exon:7120	exon
CmoCh19G002130.1:exon:7119	CmoCh19G002130.1:exon:7119	exon
CmoCh19G002130.1:exon:7118	CmoCh19G002130.1:exon:7118	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G002130.1:cds	CmoCh19G002130.1:cds	CDS
CmoCh19G002130.1:cds	CmoCh19G002130.1:cds_2	CDS
CmoCh19G002130.1:cds	CmoCh19G002130.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G002130.1	CmoCh19G002130.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding