CmoCh19G002100.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002100.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAC domain-containing protein 30-like
Location	Cmo_Chr19: 1403406 .. 1408820 (+)
Sequence length	831
RNA-Seq Expression	CmoCh19G002100.1
Synteny	CmoCh19G002100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCATGATTGCCCTCTCTTGCCGGTGGGAGTGAGATTCAGACCTACTGATCAACAGCTTCTTCAATATCTAATTTGGAAGATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGATTGTGATCTTTATGGAGAAATGGAACCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGCGCATATCAACCGTAAGGTCGGCTTGGCCAATGGTACATGGAGTGGCGAGAACTCGGCCAGTTCAATTTTTGCTACCAAAACCGATAAAACAATAATCGGCTATTGCAAACGCTTTAGGTTCGTTCTGTCATTTTGATTTCAATTTTTGTTAGAATCTTTAACCTTATGTTTGTGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGGTACGAGAATGCCCAATTGCCCGAGCATCATGGCGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAAATTATGTTTTATGCCGATTCAAAAAGAATGAAAGATTTAAAAGAAAATTACAAAAAGATCTCGAGGAGCAGCAACTTAGCAAGAAAAGAATGACCTAAATTCTTCCAGAAGTCTACCGTCAAAGAAGTGATTCTGCACTACAACCGACCTTAGTAACAGATCTAATCGATTTTAGAACGTTTAATATTTGAATTTATGTAATATTGGTTGAAGATAGATTTCTTCTTTTTTTTTTTTTTCTTTTTTTAAATAGTTAATAAGATAGAGAGTTGGATTGGATTGAAGGATTTCTTTTACCGGAAAATTTTTACAATCCAACCCTCTATTTTCGAGTTGAATTGTTGATTAAAAAAAATTATATTTTTTAGAAAGTTTTATTTGTCCAAAATAATTAAAAGTTAAAAAATCTATCTATAATTATTCACAAAAAAAAAAAAAAAAATCAATCAAGAACAAGGAGCGAAAATGGTAACATATTAACATACTTCAACATTGTTATAAAACTAAAACAATTAAAATATCGACATTGGTTGAGATATCGTTAAACTAAGAAAAATATAAGGATAGATCATCAAATTAAAAAAACAATAAAAATGGTAGTTTAAATATACTATATATATATATATATATATATAACAAAATAACAAAAATAAAAAAAATATTTAAAAAATATTTTAATTGAAATAGACTTATCTATATAGATTTTGAAAAACTTATTCAAATTAAATAATAACAAAAATGAAATGTATTTGATAGGGACGAAGAAACGGACAAACCTACCATTACGATTAACTTCTTTATATATTTTATATATTTTTATTTGATTCGGGTCAACTCGAAAGTTTTATCTCATAAATCGAAACTGAACCGAGTCGGTTCGAGTTTAGAAAAATGAACTCAACTCAACCCTTATAGTTCGGGTTGGGTTGGTCGGGGTTGTCGAGTTGAATGTACTCCTAATTCTCCTTTCCAATTGTGGCCATTGTGGTCCTAACTTATTCATTAATATATATAATTACTAAATAATTAAATATTTAATTTAATCTTAATTATTATTATAAATTTTGTATACAAAATATTTGACAATATTATATAACTAATAATAATATATTGTTTATACTTTTGCTTCCATTTTAATAATTTTACGCATATTAATAACTAAAAAAGAAATTAGGGAATTACATTTTATATATTAAATATAATAAAAAAAAGATATCTTCATTAGTCAGTCCAACTCCACTCTAAGAAGAGGTCTAATTTATTTATTTATATTTTTTAAATTTAAACTTTTCATTATTTTTTTCCATTTTCCCATTGGATTTTGGAAATAAAAATTAAAATATTAACAGAATTAAAAAATAATTTAATAAAAGAAAAATAAGAGAAAAAAAAAAAAAAATAGATACACACCATTGTCAAAATTATAAATTGAAATCTTGATCGATGGTCATGTCAGATATAGTGTCTTGTTCAATGGTCGATGGCGCCATTATTCTTTTCTTGCTATGTTGCTATAGCTCAAGATTTTTTTGGTAATTTTCTTTCAAGTCTTTCATTCTTGCTAAGTCGACATAAAACGTAATCCGAGTCTACAACTTGGTGTATCGAATCTTGGTGCAAGCTATACTCATGCATAAACCATTCACCATGATGCTCGGGCAATTGGACATTCTCGTACTGAAAATGTTCCAAGAACACAAACAAAAGGTTAAAGATTCTAATGAAAATTGAAATCAAAATAATAGAACGAACCTGAAGCACTTGCGATAGCCGATTATTTGTTTATCGGTCTTGGCAGCAAAAATCAATTTCACCAAGTCCTCGCCACTCCATGTACTGTTGGCCAAGCCAATCTTGCGATTGATATGCACCCACAAATGTTCGGATTTATTGGTTAGCCTCTTGAGTTTGGTGAAGAAATAGAGATGTTCGTCGTCAACGCCTCCAAAACGTAGCTAGATTTCCCATGGCTCCATTCCTCCATAAAGATCACAGTCGAAGACTGCACCTTTGAAATATGGGAGGCCGTGAATCTTGAAGTTTAGATACTGAAGAAGTTGCCAGGCCCACCGGCACGAGAGAGCGATTATGAGAATCCATTCAAATTTGTTATTGCCCAGTTATGAGTTGGACTATCACTATGTTTCATAAAGTGCTAGTTGTGGTATCCATAGAGTATGAGTTATTGTGTAACGTATTTTGGTCATAATACCTAGTCATGAGTTCCATAGCCTTCTTGAGTTGACGAGGCATCTTGTAGTGACAGATAGGGCACAACCTCTATTCATGCACTAACCAACGAGTTTAGGGTCTATTGTTAGACATGCCTTAGTTGTCACCCATTGAGAATTTCAAGAGTCGTAGAAGGTATACTACTGAAGTACTATCGATGGTGCTTAGTGGGGTAGTGACAGGTAATTTTATTGTAGTTACTCTAAGATGGGTAGTTTTATTGATCTAACCCGAGAAGGGTACATGAGAAGATAGTTTACTGTTCTAGTATGGAAATATAAAGTGACAGGTAGTTTATTGATCTTATAAGCAGGTACATGTTGCTCGGTACCATTTGAGAGAATCCACTAATTAGAGCTCAGTAAGTAGATATGTATGTAGTACGATCATCATTTAGAGCAAAAAGGGCTCCTCTAGACTTATGAGTATTAGTACCCTATGGCCTTTCCATGGGTCTCAGCACTCGAGGCGCACTTTATGCAAGACTGATGAATGAACTAGACATACGTGGTACCTAGAGCCAAGAGAAAACAAAAAATCTCTAAATCTTGAACATTAAGCTTTGGCACGTAAGAAACTCAAGAATTTTTTAAGGAAAAGAAAGACCCAAAATTTTTTACTCAATTTAAGGTCGCTACTGTATACATATCATAAACATTGAATGCGGAAATACTCTATTTAAATTTCATAAAACATAACCTTTATCTTAAAACACAGCCACGGACTTACGTGTTTCGAAAACACCTTTAAAACGACACAACGAAAGGTTAAATAAAATAAATAAACGTTTAAATTAAAAACATCCTATTCTAACCCAAGTATAAGAAAATAAATATCACTATCCTATGCATATGCTATGGTCTCGAGTTGTGATGCCGTCGTCAGCCGTACAGGAATGCCTTGCCTTAACTTGAAAAATGAGGTAGCACATAACTTGACTATTTCGGGGCATAAATGAATTAATATAAATGATTGACATTTAGTTTTTAATTCAAAGTTAAATCACTGTAATAGTTTAATGAAGATTTAATTATAATTGATGTGATTTTTAAAAAGCAGATAAAAGAAAATAAAAATTTAATATATACCTATCATGTCTATCTTCACTAAATCCGAGCTATCGTAGATAAAAGAAAATGTGGTAACCATAATACTTAGCTGTTGTTGATTCCCAAAACGTCTTTAGAACACAATATGCATGACACATATATCCAAATTATGCATTAAAACTTTAATTTTAAAAGTTTCACATTTTTTTCTATATTAAATTAGAAAATAAAATTTGAAGAGAACATAATTTTAAAAAAATATTATTATTATATTTTAGGGTGAAAATTGTAATTTTGTTTTTAAAGGTTTTTAACAATAAAATAAAATATAATATATTGACAACATTTTGACATCAAACATTTTTAACCTTATGAATTCAGGCTATTTAAAGGGTATTTTTAAATTAGAATTCAAAAATATTTTTGAACAGGTATTTAATTTTTTTTTTTAAGGTTAAATACTTTTAAATTAAAATAATTTCAAAAATATTTTGAAAAATGTATCATTAAATTTTAATTTAAAATGTTTAAATTAGAATTCAAACGTATTAACCTTCAAGGAGTTAAAAGCCATTTTTAATTTTTTTTAAAGATGGTATTTTTAAAATAAAATATTTTGAAACTAAAAGTTTAAGGATTTTTTTTTATAATTTTAATTTTAATTTTTTTTAAGTGGAAAGATATTATTGAATATTTTTAAAGTTTAGAAATATATATATTTTTTAAGTTGCATTTTTTTAAAAAATTAATTAATAAAAACGTCCATACAAAATATTTTTTTTTACCATTATTTTTTTTAAGTTTTAAAATATTTTAATTATTATAATTATAAATAACCAGAAATATTATTTTTGATATTTTACCACTACCAATTTTAAAATATTTTGATCTGAATTTTATTACTATCAAATAACCACGTACAAACTTATAAAAGCTCATTCCAAGAATATCAAAAAATATATTCACGGGAAATACATTCACAGAGTCTTTATCAAATACTAATGGATTCTCATGATCGCCCTCTCTTGCCCGTGGGAGTCAGATTCAGACCTACTGATCAACAACTTCTTCAATATCTACTTTGGAAGATTCATGACCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGATATGGAGCCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAAATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCGGTGCATATCAACCGCAAGGTCGGCTTGACCAACGGTACATGGAGTGGTGAGAACTCGGCTAATCCAATTTTTGCTGCCAAAACCGATAAAACAATAATCGGCTATTGCAAACGCTTTAGGTTCGTTCTGTCATTTTGATTTCAATTTTTGTTAGAATGTTTAACCTTATGTTTGTGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGGTACGAGAATGCCCAATTGCCCGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGGAGCATCATGGGGAATGGATTATGCATGA

mRNA sequence

ATGGATTCTCATGATTGCCCTCTCTTGCCGGTGGGAGTGAGATTCAGACCTACTGATCAACAGCTTCTTCAATATCTAATTTGGAAGATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGATTGTGATCTTTATGGAGAAATGGAACCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGCGCATATCAACCGTAAGGTCGGCTTGGCCAATGGTACATGGAGTGGCGAGAACTCGGCCAGTTCAATTTTTGCTACCAAAACCGATAAAACAATAATCGGCTATTGCAAACGCTTTAGCAAAAATCAATTTCACCAAGTCCTCGCCACTCCATGTACTGTTGGCCAAGCCAATCTTGCGATTGATATGCACCCACAAATGTTCGGATTTATTGTCTTGGACTGTGATCTTTATGGAGATATGGAGCCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAAATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCGGTGCATATCAACCGCAAGGTCGGCTTGACCAACGGTACATGGAGTGGTGAGAACTCGGCTAATCCAATTTTTGCTGCCAAAACCGATAAAACAATAATCGGCTATTGCAAACGCTTTAGGTACGAGAATGCCCAATTGCCCGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGGAGCATCATGGGGAATGGATTATGCATGA

Coding sequence (CDS)

ATGGATTCTCATGATTGCCCTCTCTTGCCGGTGGGAGTGAGATTCAGACCTACTGATCAACAGCTTCTTCAATATCTAATTTGGAAGATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGATTGTGATCTTTATGGAGAAATGGAACCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGCGCATATCAACCGTAAGGTCGGCTTGGCCAATGGTACATGGAGTGGCGAGAACTCGGCCAGTTCAATTTTTGCTACCAAAACCGATAAAACAATAATCGGCTATTGCAAACGCTTTAGCAAAAATCAATTTCACCAAGTCCTCGCCACTCCATGTACTGTTGGCCAAGCCAATCTTGCGATTGATATGCACCCACAAATGTTCGGATTTATTGTCTTGGACTGTGATCTTTATGGAGATATGGAGCCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAAATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCGGTGCATATCAACCGCAAGGTCGGCTTGACCAACGGTACATGGAGTGGTGAGAACTCGGCTAATCCAATTTTTGCTGCCAAAACCGATAAAACAATAATCGGCTATTGCAAACGCTTTAGGTACGAGAATGCCCAATTGCCCGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGGAGCATCATGGGGAATGGATTATGCATGA

Protein sequence

MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCKRFSKNQFHQVLATPCTVGQANLAIDMHPQMFGFIVLDCDLYGDMEPWEIWLRFGGTDGENLYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVGASWGMDYA

Homology

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy Swiss-Prot
Match: F4JN35 (Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.8e-05
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 121
           +FF    R   N  R     NR     +G W       SI   K+ KT+IG  K
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKK 112

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy Swiss-Prot
Match: Q93VY3 (NAC domain-containing protein 72 OS=Arabidopsis thaliana OX=3702 GN=NAC072 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-04
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLR--FGGTDGED 68
           LP G RF PTD++LL QYL  K+ G  +  + + D DLY + +PW++  +  FG    ++
Sbjct: 14  LPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLY-KFDPWDLPSKALFG---EKE 73

Query: 69  LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTI 116
            YFF+   R   N  R     NR  G  +G W          AT TDK I
Sbjct: 74  WYFFSPRDRKYPNGSR----PNRVAG--SGYWK---------ATGTDKII 104

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy Swiss-Prot
Match: B5X570 (NAC domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=NAC014 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-04
Identity = 38/114 (33.33%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + + D+  + EPW++  L    TD ++ 
Sbjct: 24  LPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEIDVC-KWEPWDLPGLSVIKTDDQEW 83

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 121
           +FF    R   +  R     NR   +  G W       +I   K+ K IIG  K
Sbjct: 84  FFFCPRDRKYPSGHR----SNRATDI--GYWKATGKDRTI---KSKKMIIGMKK 127

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy Swiss-Prot
Match: A0A3Q7HH64 (NAC domain-containing protein JA2L OS=Solanum lycopersicum OX=4081 GN=JA2L PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.1e-04
Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLR--FGGTDGED 68
           LP G RF PTD++LL QYL  K+ G  +  + + + DLY + +PW +  +  FG    ++
Sbjct: 14  LPPGFRFYPTDEELLVQYLCRKVAGHDFSLQIIAEIDLY-KFDPWVLPSKAIFG---EKE 73

Query: 69  LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTI 116
            YFF+   R   N  R     NR  G  +G W          AT TDK I
Sbjct: 74  WYFFSPRDRKYPNGSR----PNRVAG--SGYWK---------ATGTDKVI 104

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy Swiss-Prot
Match: Q9SQL0 (NAC domain-containing protein JA2 OS=Solanum lycopersicum OX=4081 GN=JA2 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.1e-04
Identity = 41/109 (37.61%), Postives = 53/109 (48.62%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGTDGE-DL 68
           LP G RF PTD++LL QYL  K+ G  +  + + + DLY + +PW   L    T GE + 
Sbjct: 14  LPPGFRFYPTDEELLVQYLCKKVAGHDFPLQIIGEIDLY-KFDPWV--LPSKATFGEKEW 73

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTI 116
           YFF+   R   N  R     NR  G  +G W          AT TDK I
Sbjct: 74  YFFSPRDRKYPNGSR----PNRVAG--SGYWK---------ATGTDKVI 104

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.8e-72
Identity = 152/271 (56.09%), Postives = 155/271 (57.20%), Query Frame = 0


Query: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120
           TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFAT           
Sbjct: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFAT----------- 120

Query: 121 RFSKNQFHQVLATPCTVGQANLAIDMHPQMFGFIVLDCDLYGDMEPWEIWLRFGGTDGEN 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 156

Query: 181 LYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCKRFRYE 240
                                                       KTDKTIIGYCKRFRYE
Sbjct: 181 --------------------------------------------KTDKTIIGYCKRFRYE 156

Query: 241 NAQLPEHHGEWIMHEYSLHQDSIQQAVGASW 272
           NAQLPEHHGEWIMHEYSLHQDSIQQAV +++
Sbjct: 241 NAQLPEHHGEWIMHEYSLHQDSIQQAVDSNY 156

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy TrEMBL
Match: A0A6J1HIZ2 (NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 137/200 (68.50%), Postives = 143/200 (71.50%), Query Frame = 0


Query: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHD PLLPVGVRFRPTDQQLLQYL+WKIH QPYFKRAVLDCDLYG+MEPWEIWLRFGG
Sbjct: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLLWKIHDQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120
           TDGE+LYFFTKLKRSTNNSGRLS HINRKVGL NGTWSGENSA+ IFA KTDKTIIGYCK
Sbjct: 61  TDGENLYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCK 120

Query: 121 RF----------------------------------------------SKNQFHQVLATP 155
           RF                                              SKN F QVLATP
Sbjct: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQANEPEALAIADYLFIGLGSKNWFDQVLATP 180

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-66
Identity = 143/267 (53.56%), Postives = 144/267 (53.93%), Query Frame = 0


Query: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHDCPLLPVGVRF+PTD QLLQYL WKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120
            DGE LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSAS                
Sbjct: 61  IDGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSAS---------------- 120

Query: 121 RFSKNQFHQVLATPCTVGQANLAIDMHPQMFGFIVLDCDLYGDMEPWEIWLRFGGTDGEN 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 152

Query: 181 LYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCKRFRYE 240
                                                  PIFA KTD TIIGYCKRFRYE
Sbjct: 181 ---------------------------------------PIFATKTDNTIIGYCKRFRYE 152

Query: 241 NAQLPEHHGEWIMHEYSLHQDSIQQAV 268
           N QLPE HGEWIMHEYSLHQDSIQQAV
Sbjct: 241 NVQLPERHGEWIMHEYSLHQDSIQQAV 152

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy TrEMBL
Match: A0A6J1HVP9 (NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111467098 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-63
Identity = 137/263 (52.09%), Postives = 138/263 (52.47%), Query Frame = 0


Query: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHDCPLLPVGVRF+PTD QLLQYL WKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120
            DGE LYFFTKLKR TNNSGRLSAHINRKVGLANGTWSGENS S                
Sbjct: 61  IDGEHLYFFTKLKRFTNNSGRLSAHINRKVGLANGTWSGENSGS---------------- 120

Query: 121 RFSKNQFHQVLATPCTVGQANLAIDMHPQMFGFIVLDCDLYGDMEPWEIWLRFGGTDGEN 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 148

Query: 181 LYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCKRFRYE 240
                                                  PIFA KTD TIIGYCKRFRYE
Sbjct: 181 ---------------------------------------PIFATKTDNTIIGYCKRFRYE 148

Query: 241 NAQLPEHHGEWIMHEYSLHQDSI 264
           N QLPE HGEWIMHEYSLHQDSI
Sbjct: 241 NVQLPERHGEWIMHEYSLHQDSI 148

[Close]

BLAST of CmoCh19G002100.1 vs. ExPASy TrEMBL
Match: A0A6J1HXC3 (NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.1e-55
Identity = 129/271 (47.60%), Postives = 135/271 (49.82%), Query Frame = 0


Query: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDS +  LLPVGVRFRPTD QLL+YL +KIHG PYFK AVLD DLYGEMEPWEIWLRFGG
Sbjct: 1   MDSRNHSLLPVGVRFRPTDPQLLRYLNFKIHGLPYFKGAVLDGDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120
             GE LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENS S                
Sbjct: 61  IAGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSGS---------------- 120

Query: 121 RFSKNQFHQVLATPCTVGQANLAIDMHPQMFGFIVLDCDLYGDMEPWEIWLRFGGTDGEN 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 156

Query: 181 LYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCKRFRYE 240
                                                  PIFA KTDK IIGYCK FRYE
Sbjct: 181 ---------------------------------------PIFATKTDKQIIGYCKCFRYE 156

Query: 241 NAQLPEHHGEWIMHEYSLHQDSIQQAVGASW 272
           N QLP+HHGEW MHEYSLHQDSI Q V + +
Sbjct: 241 NIQLPQHHGEWFMHEYSLHQDSIHQVVDSDY 156

[Close]

BLAST of CmoCh19G002100.1 vs. TAIR 10
Match: AT4G35580.1 (NAC transcription factor-like 9 )

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-06
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 121
           +FF    R   N  R     NR     +G W       SI   K+ KT+IG  K
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKK 112

[Close]

BLAST of CmoCh19G002100.1 vs. TAIR 10
Match: AT4G35580.2 (NAC transcription factor-like 9 )

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-06
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 121
           +FF    R   N  R     NR     +G W       SI   K+ KT+IG  K
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKK 112

[Close]

BLAST of CmoCh19G002100.1 vs. TAIR 10
Match: AT4G35580.3 (NAC transcription factor-like 9 )

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-06
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 121
           +FF    R   N  R     NR     +G W       SI   K+ KT+IG  K
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKK 112

[Close]

BLAST of CmoCh19G002100.1 vs. TAIR 10
Match: AT4G27410.2 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 9.9e-06
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLR--FGGTDGED 68
           LP G RF PTD++LL QYL  K+ G  +  + + D DLY + +PW++  +  FG    ++
Sbjct: 14  LPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLY-KFDPWDLPSKALFG---EKE 73

Query: 69  LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTI 116
            YFF+   R   N  R     NR  G  +G W          AT TDK I
Sbjct: 74  WYFFSPRDRKYPNGSR----PNRVAG--SGYWK---------ATGTDKII 104

[Close]

BLAST of CmoCh19G002100.1 vs. TAIR 10
Match: AT1G33060.1 (NAC 014 )

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-05
Identity = 38/114 (33.33%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLIWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + + D+  + EPW++  L    TD ++ 
Sbjct: 24  LPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEIDVC-KWEPWDLPGLSVIKTDDQEW 83

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 121
           +FF    R   +  R     NR   +  G W       +I   K+ K IIG  K
Sbjct: 84  FFFCPRDRKYPSGHR----SNRATDI--GYWKATGKDRTI---KSKKMIIGMKK 127

The following BLAST results are available for this feature:

BLAST of CmoCh19G002100.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JN35	4.8e-05	35.96	Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1	[more]
Q93VY3	1.4e-04	36.36	NAC domain-containing protein 72 OS=Arabidopsis thaliana OX=3702 GN=NAC072 PE=2 ...	[more]
B5X570	2.4e-04	33.33	NAC domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=NAC014 PE=2 ...	[more]
A0A3Q7HH64	3.1e-04	35.45	NAC domain-containing protein JA2L OS=Solanum lycopersicum OX=4081 GN=JA2L PE=2 ...	[more]
Q9SQL0	4.1e-04	37.61	NAC domain-containing protein JA2 OS=Solanum lycopersicum OX=4081 GN=JA2 PE=2 SV...	[more]

BLAST of CmoCh19G002100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH13	2.8e-72	56.09	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1HIZ2	2.0e-70	68.50	NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 P...	[more]
A0A6J1HSR6	1.3e-66	53.56	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HVP9	2.3e-63	52.09	NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HXC3	3.1e-55	47.60	NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=...	[more]

BLAST of CmoCh19G002100.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35580.1	3.4e-06	35.96	NAC transcription factor-like 9	[more]
AT4G35580.2	3.4e-06	35.96	NAC transcription factor-like 9	[more]
AT4G35580.3	3.4e-06	35.96	NAC transcription factor-like 9	[more]
AT4G27410.2	9.9e-06	36.36	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]
AT1G33060.1	1.7e-05	33.33	NAC 014	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 18..129 e-value: 2.1E-12 score: 49.1 coord: 141..271 e-value: 3.4E-17 score: 64.7
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 5..122
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 154..263
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 158..258 e-value: 2.0E-10 score: 41.7 coord: 10..122 e-value: 4.0E-12 score: 47.2
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 9..163 score: 11.656428
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 9..123 coord: 150..263
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 9..123 coord: 150..263

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G002100	CmoCh19G002100	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G002100.1:exon:7124	CmoCh19G002100.1:exon:7124	exon
CmoCh19G002100.1:exon:7123	CmoCh19G002100.1:exon:7123	exon
CmoCh19G002100.1:exon:7122	CmoCh19G002100.1:exon:7122	exon
CmoCh19G002100.1:exon:7121	CmoCh19G002100.1:exon:7121	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G002100.1:cds	CmoCh19G002100.1:cds	CDS
CmoCh19G002100.1:cds	CmoCh19G002100.1:cds_2	CDS
CmoCh19G002100.1:cds	CmoCh19G002100.1:cds_3	CDS
CmoCh19G002100.1:cds	CmoCh19G002100.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G002100.1	CmoCh19G002100.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding