CmoCh19G000760.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G000760.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH3-like
Location	Cmo_Chr19: 422178 .. 422788 (+)
Sequence length	603
RNA-Seq Expression	CmoCh19G000760.1
Synteny	CmoCh19G000760.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAAATTTTGGGCCAACGAAGAAAACAGGGTTTTGGTTGAATCAGTTCTTGGTAGTGAAGCTTGCGAGTTCTTGATCTCGTTGGCATCTAGCAATATCATGCCACCCGAGGCCTTCCAATTTTCGAGTGTGAATCAGGGGCTAACCCAACTTTTGGATGGTTCAAATTGGAATTATGCAATCTTTTGGCGTGTGGTTACCTTGAAATCTGGGGGTTTAGCTTTAATTTGGGGCGATGGTGCTTGTCATGATTCAAAGATTGGTATTCAAATTTCTGGTGGGGATACTCAGGGAGAGAAGAATGAGGAAATGAAGAAGCAAGTGCTTCAAATGCTTCAATCCTCTTTTGGAGGGTCTGATGAAGATGGATTTGGAGCAAGGAAGGAGGAAGCGTCGGATATCGATATGCTCTATCGGACTTCGATGTATTTCAAGTTTACGTGCGACTCCGGGAGCAGTCTCGGGGCGTCGTACAATGCTGGTAAGACTATATGGGCTTCGGATTCGTCGAGTTGTATGCGTAATTACGAATCGAGAGGGTTCTTAGCTAAAGTGGCTGGTTTGCAGACGCTGGTCTTTGTACCTGTAAAGTTGGGAGTCGTTGA

mRNA sequence

ATGGGTGAGAAATTTTGGGCCAACGAAGAAAACAGGGTTTTGGTTGAATCAGTTCTTGGTAGTGAAGCTTGCGAGTTCTTGATCTCGTTGGCATCTAGCAATATCATGCCACCCGAGGCCTTCCAATTTTCGAGTGTGAATCAGGGGCTAACCCAACTTTTGGATGGTTCAAATTGGAATTATGCAATCTTTTGGCGTGTGGTTACCTTGAAATCTGGGGGTTTAGCTTTAATTTGGGGCGATGGTGCTTGTCATGATTCAAAGATTGGTATTCAAATTTCTGGTGGGGATACTCAGGGAGAGAAGAATGAGGAAATGAAGAAGCAAGTGCTTCAAATGCTTCAATCCTCTTTTGGAGGGTCTGATGAAGATGGATTTGGAGCAAGGAAGGAGGAAGCGTCGGATATCGATATGCTCTATCGGACTTCGATGTATTTCAAGTTTACGTGCGACTCCGGGAGCAGTCTCGGGGCGTCGTACAATGCTGGTAAGACTATATGGGCTTCGGATTCGTCGAGTTGTATGCGTAATTACGAATCGAGAGGGTTCTTAGCTAAAGTGGCTGACGCTGGTCTTTGTACCTGTAAAGTTGGGAGTCGTTGA

Coding sequence (CDS)

ATGGGTGAGAAATTTTGGGCCAACGAAGAAAACAGGGTTTTGGTTGAATCAGTTCTTGGTAGTGAAGCTTGCGAGTTCTTGATCTCGTTGGCATCTAGCAATATCATGCCACCCGAGGCCTTCCAATTTTCGAGTGTGAATCAGGGGCTAACCCAACTTTTGGATGGTTCAAATTGGAATTATGCAATCTTTTGGCGTGTGGTTACCTTGAAATCTGGGGGTTTAGCTTTAATTTGGGGCGATGGTGCTTGTCATGATTCAAAGATTGGTATTCAAATTTCTGGTGGGGATACTCAGGGAGAGAAGAATGAGGAAATGAAGAAGCAAGTGCTTCAAATGCTTCAATCCTCTTTTGGAGGGTCTGATGAAGATGGATTTGGAGCAAGGAAGGAGGAAGCGTCGGATATCGATATGCTCTATCGGACTTCGATGTATTTCAAGTTTACGTGCGACTCCGGGAGCAGTCTCGGGGCGTCGTACAATGCTGGTAAGACTATATGGGCTTCGGATTCGTCGAGTTGTATGCGTAATTACGAATCGAGAGGGTTCTTAGCTAAAGTGGCTGACGCTGGTCTTTGTACCTGTAAAGTTGGGAGTCGTTGA

Protein sequence

MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWNYAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYESRGFLAKVADAGLCTCKVGSR

Homology

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy Swiss-Prot
Match: A0A3Q7H216 (Transcription factor MTB3 OS=Solanum lycopersicum OX=4081 GN=MTB3 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-37
Identity = 82/196 (41.84%), Postives = 123/196 (62.76%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSS------VNQGLTQLL 60
           M EKF+   E++V +E VLGSEA EF    AS++++     +F+S      V Q L +++
Sbjct: 1   MAEKFFLKGEDKVNMEGVLGSEAVEFFSWSASNHMLT----EFTSSRGDLGVQQALCKIV 60

Query: 61  DGSNWNYAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEK--NEEMKKQVLQ 120
           +GS+W YAI+W+V   KSG  ALIWGDG C ++KIG      D+  +K  +   KK VLQ
Sbjct: 61  EGSDWTYAIYWQVAKSKSGKSALIWGDGHCRETKIGQGEGANDSAHQKMMDGNKKKMVLQ 120

Query: 121 MLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSS 180
            + + FGGS++D   A+ E  SD+++ Y TSMY+ F  D  SS   S+N+ ++IW SD  
Sbjct: 121 KIHTCFGGSEDDNIAAKLESVSDVEVFYLTSMYYIFPFDKPSSPSQSFNSARSIWGSDLK 180

Query: 181 SCMRNYESRGFLAKVA 189
            C+ +++SR +LAK+A
Sbjct: 181 GCLEHFQSRSYLAKLA 192

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy Swiss-Prot
Match: O23487 (Transcription factor bHLH3 OS=Arabidopsis thaliana OX=3702 GN=BHLH3 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-35
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSN-------IMPPEAFQFSSVNQGLTQL 60
           MG+KFW N+E+R +VES +GSEAC+F IS AS++       + PP     S++ QGL  +
Sbjct: 1   MGQKFWENQEDRAMVESTIGSEACDFFISTASASNTALSKLVSPPSD---SNLQQGLRHV 60

Query: 61  LDGSNWNYAIFWRVVTLKSG-GLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQ 120
           ++GS+W+YA+FW    + S  G  LIWGDG C   K     SG D    + +E+K++VL+
Sbjct: 61  VEGSDWDYALFWLASNVNSSDGCVLIWGDGHCRVKK---GASGEDY--SQQDEIKRRVLR 120

Query: 121 MLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGS-SLGASYNAGKTIWASDS 180
            L  SF GSDED    +    +D+DM Y  S+YF F CD+       +Y +GK +WA+D 
Sbjct: 121 KLHLSFVGSDEDHRLVKSGALTDLDMFYLASLYFSFRCDTNKYGPAGTYVSGKPLWAADL 180

Query: 181 SSCMRNYESRGFLAKVA 189
            SC+  Y  R FLA+ A
Sbjct: 181 PSCLSYYRVRSFLARSA 189

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy Swiss-Prot
Match: A0A3Q7ELQ2 (Transcription factor MTB1 OS=Solanum lycopersicum OX=4081 GN=MTB1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-23
Identity = 70/198 (35.35%), Postives = 102/198 (51.52%), Query Frame = 0


Query: 2   GEKFWANEENRVLVESVLGSEACEFLIS-LASSNIMPPEAFQFSSVNQGLTQLLDGSN-- 61
           G   W+ E+ + +V SVLG EA E+L+S   S+           ++   L+ L++  N  
Sbjct: 4   GNMLWSGED-KAMVASVLGKEAFEYLMSGSVSAECSLMAIGNDQNLQNKLSDLVERPNAA 63

Query: 62  ---WNYAIFWRVVTLKSGGLALIWGDGACHDSKIGIQ-----ISGGDTQGEKNEEMKKQV 121
              WNYAIFW++   KSG L L WGDG C + K   +     I       E  + M+K+V
Sbjct: 64  NFSWNYAIFWQISRSKSGELVLGWGDGCCREPKEAEEREVKKILNLRLDDEGQQRMRKRV 123

Query: 122 LQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASD 181
           LQ L   FGG+DED +    +  +D +M +  SMYF F    G   G  + +GK +W SD
Sbjct: 124 LQKLHMLFGGTDEDNYAFGLDRVTDTEMFFLASMYFSFPRGEGGP-GKCFGSGKYLWLSD 183

Query: 182 SSSCMRNYESRGFLAKVA 189
           + +   +Y +R FLAK A
Sbjct: 184 ALTSNLDYCARSFLAKSA 199

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy Swiss-Prot
Match: Q9LNJ5 (Transcription factor bHLH13 OS=Arabidopsis thaliana OX=3702 GN=BHLH13 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 67/199 (33.67%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNI-MPPEAFQFSSVNQGLTQLLDGSN- 60
           +G   W NE+++ +V S+LG  A ++L+S + SN  +        ++   L+ L++  N 
Sbjct: 3   IGRLVW-NEDDKAIVASLLGKRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPNA 62

Query: 61  ----WNYAIFWRVVTLKSGGLALIWGDGACHDSKIG-----IQISGGDTQGEKNEEMKKQ 120
               WNYAIFW++   K+G L L WGDG C + K G     ++I     + E ++ M+K+
Sbjct: 63  SNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKR 122

Query: 121 VLQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWAS 180
           VLQ L   FGGS+E+      +  +D +M   +SMYF F    G   G  + + K +W S
Sbjct: 123 VLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLS 182

Query: 181 DSSSCMRNYESRGFLAKVA 189
           D  +   +Y  R FLAK A
Sbjct: 183 DVVNSGSDYCVRSFLAKSA 199

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy Swiss-Prot
Match: A0A3Q7HES4 (Transcription factor MTB2 OS=Solanum lycopersicum OX=4081 GN=MTB2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 66/192 (34.38%), Postives = 103/192 (53.65%), Query Frame = 0


Query: 8   NEENRVLVESVLGSEACEFLI-SLASSNIMPPEAFQFSSVNQGLTQLLDGSN-----WNY 67
           ++E++ +V +VLG++A ++L+ SL S+           ++   L+ L++  N     WNY
Sbjct: 6   SDEDKTMVAAVLGTKAFDYLMSSLVSAECSLMAMGSDENLQNMLSDLVERPNASNFSWNY 65

Query: 68  AIFWRVVTLKSGGLALIWGDGACHDSKIG-----IQISGGDTQGEKNEEMKKQVLQMLQS 127
           AIFW++   K G L L WGDG C +++ G      +I       E  + M+K+VLQ L  
Sbjct: 66  AIFWQISRSKLGELVLGWGDGCCREAREGEESELTRILNIRLADEAQQRMRKRVLQKLHM 125

Query: 128 SFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMR 187
            FGG+DED + +  ++ +D +M +  SMYF F    G   G  + AGK +W SD      
Sbjct: 126 FFGGTDEDNYVSGLDKVTDTEMFFLASMYFSFPRGQGGP-GKCFTAGKHVWLSDVMRSSV 185

Query: 188 NYESRGFLAKVA 189
           +Y SR FL K A
Sbjct: 186 DYCSRSFLMKSA 196

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy TrEMBL
Match: A0A6J1HH34 (transcription factor bHLH3-like OS=Cucurbita moschata OX=3662 GN=LOC111463991 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.1e-102
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 60
           MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN
Sbjct: 41  MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 100

Query: 61  YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 120
           YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG
Sbjct: 101 YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 160

Query: 121 SDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 180
           SDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES
Sbjct: 161 SDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 220

Query: 181 RGFLAKVA 189
           RGFLAKVA
Sbjct: 221 RGFLAKVA 228

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy TrEMBL
Match: A0A6J1HKJ4 (transcription factor bHLH3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463859 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 60
           MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN
Sbjct: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 60

Query: 61  YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 120
           YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG
Sbjct: 61  YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 120

Query: 121 SDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 180
           SDEDGFGARKEEA DIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES
Sbjct: 121 SDEDGFGARKEEALDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 180

Query: 181 RGFLAKVA 189
           RGFLAKVA
Sbjct: 181 RGFLAKVA 188

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy TrEMBL
Match: A0A6J1HI53 (transcription factor bHLH3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463859 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 60
           MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN
Sbjct: 51  MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 110

Query: 61  YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 120
           YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG
Sbjct: 111 YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 170

Query: 121 SDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 180
           SDEDGFGARKEEA DIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES
Sbjct: 171 SDEDGFGARKEEALDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 230

Query: 181 RGFLAKVA 189
           RGFLAKVA
Sbjct: 231 RGFLAKVA 238

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy TrEMBL
Match: A0A6J1HWM2 (transcription factor bHLH3-like OS=Cucurbita maxima OX=3661 GN=LOC111466945 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 183/188 (97.34%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFSSVNQGLTQLLDGSNWN 60
           MGEKFWANEENRVLVESVLGSEACEFLISLASSNI+PPEAFQFSSVNQGLTQLLDGSNWN
Sbjct: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIIPPEAFQFSSVNQGLTQLLDGSNWN 60

Query: 61  YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQSSFGG 120
           YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISG DTQGEKNEEMKKQVLQMLQSSFGG
Sbjct: 61  YAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGRDTQGEKNEEMKKQVLQMLQSSFGG 120

Query: 121 SDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMRNYES 180
           SDEDGFGARKEEASDIDMLY+TSMY+KFTCDSGSSLG SYNAGKTIWASDSSSCMRNYES
Sbjct: 121 SDEDGFGARKEEASDIDMLYQTSMYYKFTCDSGSSLGTSYNAGKTIWASDSSSCMRNYES 180

Query: 181 RGFLAKVA 189
           RGFLAKVA
Sbjct: 181 RGFLAKVA 188

[Close]

BLAST of CmoCh19G000760.1 vs. ExPASy TrEMBL
Match: A0A6J1K6T2 (transcription factor bHLH3-like OS=Cucurbita maxima OX=3661 GN=LOC111491184 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.6e-77
Identity = 148/192 (77.08%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNIMPPEAFQFS----SVNQGLTQLLDG 60
           MGEKFWANEE RVLVESV+GSEACEFL+SLASSNI+  E  Q S    SVNQGLT+LLDG
Sbjct: 1   MGEKFWANEEKRVLVESVVGSEACEFLMSLASSNIL-AEDLQLSLGDFSVNQGLTKLLDG 60

Query: 61  SNWNYAIFWRVVTLKSGGLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQMLQS 120
           S+WNYAIFWRVV+LKSG LALIWGDG C+D KIGI I GGD QGEK EE+K+QVLQMLQS
Sbjct: 61  SSWNYAIFWRVVSLKSGALALIWGDGNCNDEKIGIAIPGGDGQGEKKEELKRQVLQMLQS 120

Query: 121 SFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWASDSSSCMR 180
           SFGGSD+DG+GAR+EEASDI+MLY TSM++KF CDSGSSLG SY +G ++WASD +SC+R
Sbjct: 121 SFGGSDKDGYGARREEASDIEMLYLTSMHYKFMCDSGSSLGESYKSGNSLWASDVTSCLR 180

Query: 181 NYESRGFLAKVA 189
           NYESRGFLAK+A
Sbjct: 181 NYESRGFLAKMA 191

[Close]

BLAST of CmoCh19G000760.1 vs. TAIR 10
Match: AT4G16430.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-36
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSN-------IMPPEAFQFSSVNQGLTQL 60
           MG+KFW N+E+R +VES +GSEAC+F IS AS++       + PP     S++ QGL  +
Sbjct: 1   MGQKFWENQEDRAMVESTIGSEACDFFISTASASNTALSKLVSPPSD---SNLQQGLRHV 60

Query: 61  LDGSNWNYAIFWRVVTLKSG-GLALIWGDGACHDSKIGIQISGGDTQGEKNEEMKKQVLQ 120
           ++GS+W+YA+FW    + S  G  LIWGDG C   K     SG D    + +E+K++VL+
Sbjct: 61  VEGSDWDYALFWLASNVNSSDGCVLIWGDGHCRVKK---GASGEDY--SQQDEIKRRVLR 120

Query: 121 MLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGS-SLGASYNAGKTIWASDS 180
            L  SF GSDED    +    +D+DM Y  S+YF F CD+       +Y +GK +WA+D 
Sbjct: 121 KLHLSFVGSDEDHRLVKSGALTDLDMFYLASLYFSFRCDTNKYGPAGTYVSGKPLWAADL 180

Query: 181 SSCMRNYESRGFLAKVA 189
            SC+  Y  R FLA+ A
Sbjct: 181 PSCLSYYRVRSFLARSA 189

[Close]

BLAST of CmoCh19G000760.1 vs. TAIR 10
Match: AT1G01260.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-23
Identity = 67/199 (33.67%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNI-MPPEAFQFSSVNQGLTQLLDGSN- 60
           +G   W NE+++ +V S+LG  A ++L+S + SN  +        ++   L+ L++  N 
Sbjct: 3   IGRLVW-NEDDKAIVASLLGKRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPNA 62

Query: 61  ----WNYAIFWRVVTLKSGGLALIWGDGACHDSKIG-----IQISGGDTQGEKNEEMKKQ 120
               WNYAIFW++   K+G L L WGDG C + K G     ++I     + E ++ M+K+
Sbjct: 63  SNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKR 122

Query: 121 VLQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWAS 180
           VLQ L   FGGS+E+      +  +D +M   +SMYF F    G   G  + + K +W S
Sbjct: 123 VLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLS 182

Query: 181 DSSSCMRNYESRGFLAKVA 189
           D  +   +Y  R FLAK A
Sbjct: 183 DVVNSGSDYCVRSFLAKSA 199

[Close]

BLAST of CmoCh19G000760.1 vs. TAIR 10
Match: AT1G01260.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-23
Identity = 67/199 (33.67%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNI-MPPEAFQFSSVNQGLTQLLDGSN- 60
           +G   W NE+++ +V S+LG  A ++L+S + SN  +        ++   L+ L++  N 
Sbjct: 3   IGRLVW-NEDDKAIVASLLGKRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPNA 62

Query: 61  ----WNYAIFWRVVTLKSGGLALIWGDGACHDSKIG-----IQISGGDTQGEKNEEMKKQ 120
               WNYAIFW++   K+G L L WGDG C + K G     ++I     + E ++ M+K+
Sbjct: 63  SNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKR 122

Query: 121 VLQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWAS 180
           VLQ L   FGGS+E+      +  +D +M   +SMYF F    G   G  + + K +W S
Sbjct: 123 VLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLS 182

Query: 181 DSSSCMRNYESRGFLAKVA 189
           D  +   +Y  R FLAK A
Sbjct: 183 DVVNSGSDYCVRSFLAKSA 199

[Close]

BLAST of CmoCh19G000760.1 vs. TAIR 10
Match: AT1G01260.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-23
Identity = 67/199 (33.67%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSNI-MPPEAFQFSSVNQGLTQLLDGSN- 60
           +G   W NE+++ +V S+LG  A ++L+S + SN  +        ++   L+ L++  N 
Sbjct: 3   IGRLVW-NEDDKAIVASLLGKRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPNA 62

Query: 61  ----WNYAIFWRVVTLKSGGLALIWGDGACHDSKIG-----IQISGGDTQGEKNEEMKKQ 120
               WNYAIFW++   K+G L L WGDG C + K G     ++I     + E ++ M+K+
Sbjct: 63  SNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKR 122

Query: 121 VLQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNAGKTIWAS 180
           VLQ L   FGGS+E+      +  +D +M   +SMYF F    G   G  + + K +W S
Sbjct: 123 VLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLS 182

Query: 181 DSSSCMRNYESRGFLAKVA 189
           D  +   +Y  R FLAK A
Sbjct: 183 DVVNSGSDYCVRSFLAKSA 199

[Close]

BLAST of CmoCh19G000760.1 vs. TAIR 10
Match: AT2G46510.1 (ABA-inducible BHLH-type transcription factor )

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-22
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 1   MGEKFWANEENRVLVESVLGSEACEFLISLASSN-----IMPPEAFQFSSVNQGLTQLLD 60
           M +  W ++E++ +V +VLG  A +FL + ++SN     +M  +     ++N+ L+ L+D
Sbjct: 3   MSDLGW-DDEDKSVVSAVLGHLASDFLRANSNSNQNLFLVMGTD----DTLNKKLSSLVD 62

Query: 61  GSN-----WNYAIFWRVVTLKSGGLALIWGDGAC------HDSKI--GIQISGGDTQGEK 120
             N     WNYAIFW+    +SG   L WGDG C       +SK+      +    + E 
Sbjct: 63  WPNSENFSWNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEESKVVRSYNFNNMGAEEET 122

Query: 121 NEEMKKQVLQMLQSSFGGSDEDGFGARKEEASDIDMLYRTSMYFKFTCDSGSSLGASYNA 180
            ++M+K+VLQ L   FGGSDED +    E+ +  ++ +  SMYF F    G   G  Y++
Sbjct: 123 WQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGP-GRCYSS 182

Query: 181 GKTIWASDSSSCMRNYESRGFLAKVA 189
           GK +W SD+ +   +Y  R F+AK A
Sbjct: 183 GKHVWLSDAVNSESDYCFRSFMAKSA 202

The following BLAST results are available for this feature:

BLAST of CmoCh19G000760.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A3Q7H216	4.5e-37	41.84	Transcription factor MTB3 OS=Solanum lycopersicum OX=4081 GN=MTB3 PE=2 SV=1	[more]
O23487	3.2e-35	42.13	Transcription factor bHLH3 OS=Arabidopsis thaliana OX=3702 GN=BHLH3 PE=1 SV=1	[more]
A0A3Q7ELQ2	2.8e-23	35.35	Transcription factor MTB1 OS=Solanum lycopersicum OX=4081 GN=MTB1 PE=1 SV=1	[more]
Q9LNJ5	1.4e-22	33.67	Transcription factor bHLH13 OS=Arabidopsis thaliana OX=3702 GN=BHLH13 PE=1 SV=1	[more]
A0A3Q7HES4	2.4e-22	34.38	Transcription factor MTB2 OS=Solanum lycopersicum OX=4081 GN=MTB2 PE=2 SV=1	[more]

BLAST of CmoCh19G000760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH34	4.1e-102	100.00	transcription factor bHLH3-like OS=Cucurbita moschata OX=3662 GN=LOC111463991 PE...	[more]
A0A6J1HKJ4	2.1e-101	99.47	transcription factor bHLH3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HI53	2.1e-101	99.47	transcription factor bHLH3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HWM2	1.9e-99	97.34	transcription factor bHLH3-like OS=Cucurbita maxima OX=3661 GN=LOC111466945 PE=4...	[more]
A0A6J1K6T2	4.6e-77	77.08	transcription factor bHLH3-like OS=Cucurbita maxima OX=3661 GN=LOC111491184 PE=4...	[more]

BLAST of CmoCh19G000760.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16430.1	2.3e-36	42.13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G01260.1	1.0e-23	33.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G01260.2	1.0e-23	33.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G01260.3	1.0e-23	33.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G46510.1	1.9e-22	33.50	ABA-inducible BHLH-type transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025610	Transcription factor MYC/MYB N-terminal	PFAM	PF14215	bHLH-MYC_N	coord: 48..190 e-value: 1.5E-22 score: 80.7
None	No IPR available	PANTHER	PTHR11514:SF53	TRANSCRIPTION FACTOR BHLH3	coord: 1..189
IPR045084	Transcription factor AIB/MYC-like	PANTHER	PTHR11514	MYC	coord: 1..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G000760	CmoCh19G000760	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G000760.1:exon:7454	CmoCh19G000760.1:exon:7454	exon
CmoCh19G000760.1:exon:7453	CmoCh19G000760.1:exon:7453	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G000760.1:cds	CmoCh19G000760.1:cds	CDS
CmoCh19G000760.1:cds	CmoCh19G000760.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G000760.1	CmoCh19G000760.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010629	negative regulation of gene expression
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding