CmoCh18G003020.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003020.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr18: 1954832 .. 1957216 (+)
Sequence length	423
RNA-Seq Expression	CmoCh18G003020.1
Synteny	CmoCh18G003020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATCTCTACCAAGTCAGGCAACTGGTGGCCGGAGAACGTGGTCTTGAGACGTATCGATAGCGCCCGGAGGCATAAGCTTCCACATGGATACTCCTGGATATCCAATCACAGGTACGAACTTCGCCCCAACAACATGATTTGGAGCAGAAAATGGAGGAGGGTGAGGCAGGAAACTTGGTTGAGTAATGAAGGTTTTCATTTTCTGTTTAAGATTGTCTTTTGCTTCTTTTAGCCTCTGTTTCTCATCTCGTAGTTCATTCTTTTCAGCCTGAACAAAGAAGAAATAGAATCAAACATCGATGGAAGATCAAACCGAACATCGACGATTGCAAAACCACATAATCTACCTTCATTTCATTGATCTTCTCCAGAAAATTCTCATTGGACTCCTTCAGCTTCTGAGCTTCATCTCTTAGCTGCAAGATCATTCGAACTGCATCACCCAAAATAACAGACTTGTCAATTTTGGGAGACGTTCCATGATTGAGGATGGAATTCAACTCCAGAAACCTTTAATCAGCAAGCAAACACAAAATATGAGGCGGGGGAGGAGCGGAGCAGAGATGGGAATGGCGAAAAAGATGAATGTAACGAATCGAGATGCCTGTCATTTAGTCTATTTCTCCGCACTTTCTCTTTATGTGCTTTGGACAAAGATGCACTTGATCCAGGGCTCATCCTGTCAACAGTAAGATCACTACCATGCTATTGTAAGGGCATATCCAATATGCTAAAGTTGATAGCCAGAGCATTAGAACATAACCAATGATATTGTAAGGGCATATCCAATATGCTCAAATTGATTGCCACAGCATTAGAACATAAACAATGATATGGTAATCCTCCTCATAGTGCAGATACTCAACTTGGGAACTAATAATTGCTCACCTGTTCCTAGACCCAGATTCTTTTATATCGTTTAGCTTTCCATGTGCCTCATCAAAGTCTTCCCTTAAAACACTAACAACGGTACGATGAGATCTTTAATAAAAAAATGGCATCTCAGCTGTCATATAAAGAAAATAAAACATATAAGCATTCGAGTACGCTCTCATGAAAAGGCTCTAATGTTTGAATTGAGTCTAATTGTGAGATTCCACGTCAGTTGGAGATGAGAACGAAACATTCCTTATAAGGGGGTGGAAACCTCTCCCTAGCAAACACGTTTTAAAAACCTTGAGAAGAAGCCCTTAAGGGAAAGCCTAAAGAAGACAATATATGCTAGCGGTGGGCTTAGATTCTTAGAAATGGTATCAGAGCCATACACGGGGCGGTGTGCCAGCAAGGACACTAGGCCCCCAAGAGGTGTGGATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAATCTTGAGGGGAAGTCCAAAAGAGAAAGCTCAAAGAGGACCATATCTGCTAGCAGTGGTCTTAGACGGTTACAAATGGTATCAGAATCAAACACCGGGTGGTGTTCCAACGAGGACGCTGGCCCCAAGGGAGGTGGATTGTGAGATCTCATGTCGGTTGGAGAGGGGAACGAAACATTACGGGTGTGGAAATCTCTCCCTATCAAAGGCATTTTAAAACTTTGAGGGGGCTCCAACGAGGACGCTGGCCCCAAGGGAGGTGGATTGTGAGATCTCATGTCGGTTGGAGAGGGGAACGAAACATTACGGGTGTGGAAACCTCTCCCTATCAGAGGCATTTTAAAACTTTGAGGGGGAAGCCCGAAAGGAAAAAGCCAAAGAGGACAAAACCTCTCCCTAGCAGAATCTTGAGGAGAATCTTGAGGGGAAGCCCGAAAAGAAAAAGCCAAAGAAGACAATATCTACTGCAGTGGACTTGGACAATTTCACTAACACATGGATCACTGTAAAATTTAGAACTTGAAACCTACCTCTAATATCATGAACTACTAATCTAAAACAGAGAAGGAAAAAACATTAAAAAAAGAGTTTGAATTCAAGGCTTTTTACTTTGATACCATGTTAAAAATCTATAAGAACGAAGGCTAAATTGGAGTAGGCATCATAATCTGGTACAACCCCTTGCCAATGTAAGACGTTAGTGAATCAAATTTTGCTTAATGAAATAACTTCATAGTCCTATGTTGAATCATGTAATCTACATCCACAAGCAAACCCAGATGATAATCCACAACTCAACCAATTCATTTCAAACAACATACAAATCCCAGGAACAATATCAAAAAACAAAACTCAAAAGAGATTCATGAGCTATTAGAACCTGAAGGAGGCAGTGAAATCGCGAGAGGACAAAGTGAAAACAGGAAGATCCAGTCAAGGTAGGTCACCGCCGGGGACCGGAAAGTCCTCGATCAGAGCGTAA

mRNA sequence

ATGGAAGATCTCTACCAAGTCAGGCAACTGGTGGCCGGAGAACGTGGTCTTGAGACGTACGAACTTCGCCCCAACAACATGATTTGGAGCAGAAAATGGAGGAGGGTGAGGCAGGAAACTTGGTTGAGTAATGAAGAAACCTTTAATCAGCAAGCAAACACAAAATATGAGGCGGGGGAGGAGCGGAGCAGAGATGGGAATGGCGAAAAAGATGAATGTAACGAATCGAGATGCCTGTCATTTAGTCTATTTCTCCGCACTTTCTCTTTATGTGCTTTGGACAAAGATGCACTTGATCCAGGGCTCATCCTGTCAACAAACCTGAAGGAGGCAGTGAAATCGCGAGAGGACAAAGTGAAAACAGGAAGATCCAGTCAAGGTAGGTCACCGCCGGGGACCGGAAAGTCCTCGATCAGAGCGTAA

Coding sequence (CDS)

ATGGAAGATCTCTACCAAGTCAGGCAACTGGTGGCCGGAGAACGTGGTCTTGAGACGTACGAACTTCGCCCCAACAACATGATTTGGAGCAGAAAATGGAGGAGGGTGAGGCAGGAAACTTGGTTGAGTAATGAAGAAACCTTTAATCAGCAAGCAAACACAAAATATGAGGCGGGGGAGGAGCGGAGCAGAGATGGGAATGGCGAAAAAGATGAATGTAACGAATCGAGATGCCTGTCATTTAGTCTATTTCTCCGCACTTTCTCTTTATGTGCTTTGGACAAAGATGCACTTGATCCAGGGCTCATCCTGTCAACAAACCTGAAGGAGGCAGTGAAATCGCGAGAGGACAAAGTGAAAACAGGAAGATCCAGTCAAGGTAGGTCACCGCCGGGGACCGGAAAGTCCTCGATCAGAGCGTAA

Protein sequence

MEDLYQVRQLVAGERGLETYELRPNNMIWSRKWRRVRQETWLSNEETFNQQANTKYEAGEERSRDGNGEKDECNESRCLSFSLFLRTFSLCALDKDALDPGLILSTNLKEAVKSREDKVKTGRSSQGRSPPGTGKSSIRA

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh18G003020.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G003020.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G003020.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G003020.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G003020	CmoCh18G003020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G003020.1:exon:1757	CmoCh18G003020.1:exon:1757	exon
CmoCh18G003020.1:exon:1758	CmoCh18G003020.1:exon:1758	exon
CmoCh18G003020.1:exon:1759	CmoCh18G003020.1:exon:1759	exon
CmoCh18G003020.1:exon:1760	CmoCh18G003020.1:exon:1760	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G003020.1:cds	CmoCh18G003020.1:cds	CDS
CmoCh18G003020.1:cds	CmoCh18G003020.1:cds_2	CDS
CmoCh18G003020.1:cds	CmoCh18G003020.1:cds_3	CDS
CmoCh18G003020.1:cds	CmoCh18G003020.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G003020.1	CmoCh18G003020.1-protein	polypeptide