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CmoCh17G012380.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAATTCTATTGTTCTTGCGGTCTCTTCTCTTTTTGTCCTTTCAGTTCTCTTCTCCAATGGCGATGCAGCTTCCCCAAACGATGTCGCTTCGACCATCTGTCCAAAAACTAGAAACCCTTCTTTTTGCTTAGACGTGTTGAAATTTGCTGGCACCTCCGACCTCAAAGAGCTGGCCACCTTCACCCTCAACCTCGCCCATGACAAAGCTGCTGAAAGCCATGCCCTCGCCCAGTCCCTGGCGTCCAAGGCCGCCGATCCCAAGCTTAAGGAGCGCTATGACACCTGTGCTGAATTCTACGGCAATGCTGCCGATGGCATCGAGGATGGGAAGAACTACTTGGGGGAAGGTGACTACAATGGCGTCAACATTAAGGCATCTGCAGCCATGACGGAGGCCGGCGACTGTCTGGACAGCTTCACGCAGCCGCCGAAGGACCCATCGGCGCTGCCTGGCAACGGGAAGGCTGTGGAAGATATTTGTAGTATTATCTTGGTTATAGCCAACCTTCTTATTGGGTCGGTCTAA ATGGCGAATTCTATTGTTCTTGCGGTCTCTTCTCTTTTTGTCCTTTCAGTTCTCTTCTCCAATGGCGATGCAGCTTCCCCAAACGATGTCGCTTCGACCATCTGTCCAAAAACTAGAAACCCTTCTTTTTGCTTAGACGTGTTGAAATTTGCTGGCACCTCCGACCTCAAAGAGCTGGCCACCTTCACCCTCAACCTCGCCCATGACAAAGCTGCTGAAAGCCATGCCCTCGCCCAGTCCCTGGCGTCCAAGGCCGCCGATCCCAAGCTTAAGGAGCGCTATGACACCTGTGCTGAATTCTACGGCAATGCTGCCGATGGCATCGAGGATGGGAAGAACTACTTGGGGGAAGGTGACTACAATGGCGTCAACATTAAGGCATCTGCAGCCATGACGGAGGCCGGCGACTGTCTGGACAGCTTCACGCAGCCGCCGAAGGACCCATCGGCGCTGCCTGGCAACGGGAAGGCTGTGGAAGATATTTGTAGTATTATCTTGGTTATAGCCAACCTTCTTATTGGGTCGGTCTAA ATGGCGAATTCTATTGTTCTTGCGGTCTCTTCTCTTTTTGTCCTTTCAGTTCTCTTCTCCAATGGCGATGCAGCTTCCCCAAACGATGTCGCTTCGACCATCTGTCCAAAAACTAGAAACCCTTCTTTTTGCTTAGACGTGTTGAAATTTGCTGGCACCTCCGACCTCAAAGAGCTGGCCACCTTCACCCTCAACCTCGCCCATGACAAAGCTGCTGAAAGCCATGCCCTCGCCCAGTCCCTGGCGTCCAAGGCCGCCGATCCCAAGCTTAAGGAGCGCTATGACACCTGTGCTGAATTCTACGGCAATGCTGCCGATGGCATCGAGGATGGGAAGAACTACTTGGGGGAAGGTGACTACAATGGCGTCAACATTAAGGCATCTGCAGCCATGACGGAGGCCGGCGACTGTCTGGACAGCTTCACGCAGCCGCCGAAGGACCCATCGGCGCTGCCTGGCAACGGGAAGGCTGTGGAAGATATTTGTAGTATTATCTTGGTTATAGCCAACCTTCTTATTGGGTCGGTCTAA MANSIVLAVSSLFVLSVLFSNGDAASPNDVASTICPKTRNPSFCLDVLKFAGTSDLKELATFTLNLAHDKAAESHALAQSLASKAADPKLKERYDTCAEFYGNAADGIEDGKNYLGEGDYNGVNIKASAAMTEAGDCLDSFTQPPKDPSALPGNGKAVEDICSIILVIANLLIGSV Homology
BLAST of CmoCh17G012380.1 vs. ExPASy Swiss-Prot
Match: P83326 (Pectinesterase inhibitor OS=Actinidia deliciosa OX=3627 GN=PMEI PE=1 SV=2) HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30 Identity = 78/177 (44.07%), Postives = 104/177 (58.76%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy Swiss-Prot
Match: Q9LNF2 (Pectinesterase inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=PMEI1 PE=1 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17 Identity = 61/166 (36.75%), Postives = 93/166 (56.02%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy Swiss-Prot
Match: Q9LUV1 (Pectinesterase inhibitor 2 OS=Arabidopsis thaliana OX=3702 GN=PMEI2 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 5.9e-17 Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy TrEMBL
Match: A0A6J1GPI8 (pectinesterase inhibitor-like OS=Cucurbita moschata OX=3662 GN=LOC111456295 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 4.2e-90 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy TrEMBL
Match: A0A6J1JS95 (pectinesterase inhibitor-like OS=Cucurbita maxima OX=3661 GN=LOC111487936 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 4.2e-66 Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy TrEMBL
Match: A0A6J1F073 (pectinesterase inhibitor-like OS=Cucurbita moschata OX=3662 GN=LOC111437853 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 4.2e-66 Identity = 145/178 (81.46%), Postives = 149/178 (83.71%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy TrEMBL
Match: A0A6J1EWA8 (pectinesterase inhibitor-like OS=Cucurbita moschata OX=3662 GN=LOC111436712 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65 Identity = 144/178 (80.90%), Postives = 147/178 (82.58%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. ExPASy TrEMBL
Match: A0A6J1GR72 (pectinesterase inhibitor-like OS=Cucurbita moschata OX=3662 GN=LOC111456293 PE=4 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65 Identity = 138/174 (79.31%), Postives = 148/174 (85.06%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. NCBI nr
Match: XP_022953892.1 (pectinesterase inhibitor-like [Cucurbita moschata]) HSP 1 Score: 340.5 bits (872), Expect = 8.6e-90 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. NCBI nr
Match: XP_023549425.1 (pectinesterase inhibitor-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81 Identity = 163/176 (92.61%), Postives = 167/176 (94.89%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. NCBI nr
Match: XP_023549427.1 (pectinesterase inhibitor-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67 Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. NCBI nr
Match: XP_022991215.1 (pectinesterase inhibitor-like [Cucurbita maxima]) HSP 1 Score: 260.8 bits (665), Expect = 8.7e-66 Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. NCBI nr
Match: XP_022931695.1 (pectinesterase inhibitor-like [Cucurbita moschata]) HSP 1 Score: 260.8 bits (665), Expect = 8.7e-66 Identity = 145/178 (81.46%), Postives = 149/178 (83.71%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. TAIR 10
Match: AT1G48020.1 (pectin methylesterase inhibitor 1 ) HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18 Identity = 61/166 (36.75%), Postives = 93/166 (56.02%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. TAIR 10
Match: AT3G17220.1 (pectin methylesterase inhibitor 2 ) HSP 1 Score: 89.0 bits (219), Expect = 4.2e-18 Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 0
BLAST of CmoCh17G012380.1 vs. TAIR 10
Match: AT2G47340.1 (Plant invertase/pectin methylesterase inhibitor superfamily protein ) HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05 Identity = 24/80 (30.00%), Postives = 40/80 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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