CmoCh16G007490.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G007490.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr16: 3761404 .. 3763771 (-)
Sequence length	483
RNA-Seq Expression	CmoCh16G007490.1
Synteny	CmoCh16G007490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACATGCTCGAGATCGAAACAAAAGAGGAACTTCGGGTAGATGCATCGTGACCCTCCATAGAATGAACGCTCCCAATGTACCTCAATCAGGACATGCCTGGAATGTGACAAACAACATTGGGGTAGATGTATGGTGTAATCGAATAGATCCTTCCAAAAGCACCAAATTATGTGGTGACAGACATAATGCCAAGGTTATTTCACTTTCGTTTATCTACCTTAGGTTCCATCAACTCTTTTATTTCCATGTCATTCATATTGCAAGTGAGAATTGAGTTAGATCATCTTAGGTGTATATTGTGGGTAGCCATACCGAAAGTAAAGGATTGTCGAGTAGTGATAGATGGTTTAGTCCTTAAAAGTAACCCCTGTGGTCTTAGGCATGAAGGACTTCAAAGTCGTTCTAAGCACAAACTAATTGACAAGGAACTTCATTAGTATCATACTTCTTTCACAAGGAGCTAACGTCTTGGTCTTCGTCCCAAGACATCTACAATTACAAGACTTAGTGGACAAAGAATTTATGTGCCCCGGTGTTTCACACTAACACCAGGACTTATTCATGATAAAGAATAAATACCCATTTCTCCGTGTAAACGATTTATTTGACCAATTTGAGGGAATCAGTGTATAGACGATTTCATTTTTTTAATCCTATTTTTCTTTCATTAAAATAATTATTCCATTCGATAACCAAATGGTAGGTGATATGGTCAAAATGTCATTACTCGTGAAAAAGAAAAATCACGAAGATAAAATATTTGTATTGCGACCAACGTCTTTTAGTTTCCCTCTCTCTGTTTTAGCAACATTTTTAAATAAATGAAAATCGGTAAAACAATGATTGAGTGGAAATTAAAGACGAGTACAAAAAAGGTTGTATCGTTCCCTAATTATTTTTCTCTTTTTCACGTGCATAGCAAAACATATATCTTTAACCATAATAATGTCTTTCCTCAATAAATTATTTTGGATTTTTCTGTGTCTATACGAATGTATCATATCTCGTATATCATATCTAAATAATTTAGATAAGAAGGATACATGAATAAACCGAAATCATTAAGAGAACATGAAAATGCGGTAACTACGAAAAATTAAAAGAATGGAAAATCATTAATTATACCAGACAAATTGCTATGGTGGTTCAATTATAAAAACTCAATGTTTGAAGTAGTTCTACGTTGGGTGACGTTTTAGAAATACTTTGAACGAGGACAAAACATGATGAAAAACTGAGTTGGTATGTGTGGATAGTCTTCACTCTCGTTGTTCTCGAGAAGGAAGAAAAATATACCAAAAAGTTAGAAAGATGATTATTCCTTTACATGTCACTAAGTTGTCATCCTGTACCGTAAGATTCGCTGCCTTCCTCAATTTATAGTGAACTTCCAGACTAATCAAATATCTTTACAACTTTTGAAGAACAGAACTTTTCATACAATAATCAAAAGTAGAAAAAGAATGTTCAAAATTCAATCAGCTTTGTTCAAGAACACAAAGCAAGAAGAAATGGGTCGTCTCTTTCATTCCACTAACAGTAGCAGTTGCAGAGCTCCATTAGTGTAAAAATGGTGTGTTAGCTGGCAAAAGTTGCTACACAACAAAACGCCAGTTCCCTAAAAACCGGGTTTTATGGAGCCGTTGCACTTTCTCTTGTGAAAATCAAGGGTAATTCTGTCATCTCCTCACCTTTTCCAATAAATGCAGCTATTCTCTCTTCTGACACCAGTTTCCTCTGTTTTGTGTAATGTGAGATGTTTTTGCTTTGCTTTAGTTCTTAATTACAAAATATTTTCTCTGGTTTTTTTGTCGTACCCATGAGGAGGAATGGCCGTTGTAATTGTTTAATTGAACGGTGAAGCATGAATGTTTTCTAATTTTCGCTGTTTTTTTTTTTTTGGTGAAATCTACACATGTTTCGAGGATCTTCTTGCCCTGTTCTTGTTTTCTTCCGTTCTTAGGTTTTTGATCCATCTCCATTTTGCTTCATTGTTGCTGCATTTTCCTCTGAATCTCTGCAAAAATCTTTGTTCTAGAGGATCTTTGAAGATGGGTTATCTTTGTTTTCCGTTGATGGGTTTGATTTTGTGAGTTCTCTGTCACTGCTCACTGGAAAACAAGCTAATCCTATGTTTTTTCATACTTTGAATGTAGTAATGTGAAGGTAACTCCGACTTCTGTAGCTCATTCCATTTTGTGGGTCTTGTTCCTTTCTGTACGAACACGCTTCCCTCTGGTGGGTTCTTGATTACGTTGGGGTTTTTCGCGTTGCTCGTGGTGAACAGGCTGCTCTGTTTTCGCGGAAGAGTTTCTTCTGGAAATCGAGGTGGGAGACCGTTGATTCCGAAGTGGGTGTTCTGA

mRNA sequence

ATGGTACATGCTCGAGATCGAAACAAAAGAGGAACTTCGGGTAGATGCATCGTGACCCTCCATAGAATGAACGCTCCCAATGTACCTCAATCAGGACATGCCTGGAATGTGACAAACAACATTGGGGTAGATGTATGGTGTAATCGAATAGATCCTTCCAAAAGCACCAAATTATGTGGTGACAGACATAATGCCAAGCTGGCAAAAGTTGCTACACAACAAAACGCCAGTTCCCTAAAAACCGGGTTTTATGGAGCCGTTGCACTTTCTCTTGTGAAAATCAAGGGTAACTCCGACTTCTGTAGCTCATTCCATTTTGTGGGTCTTGTTCCTTTCTGTACGAACACGCTTCCCTCTGGTGGGTTCTTGATTACGTTGGGGTTTTTCGCGTTGCTCGTGGTGAACAGGCTGCTCTGTTTTCGCGGAAGAGTTTCTTCTGGAAATCGAGGTGGGAGACCGTTGATTCCGAAGTGGGTGTTCTGA

Coding sequence (CDS)

ATGGTACATGCTCGAGATCGAAACAAAAGAGGAACTTCGGGTAGATGCATCGTGACCCTCCATAGAATGAACGCTCCCAATGTACCTCAATCAGGACATGCCTGGAATGTGACAAACAACATTGGGGTAGATGTATGGTGTAATCGAATAGATCCTTCCAAAAGCACCAAATTATGTGGTGACAGACATAATGCCAAGCTGGCAAAAGTTGCTACACAACAAAACGCCAGTTCCCTAAAAACCGGGTTTTATGGAGCCGTTGCACTTTCTCTTGTGAAAATCAAGGGTAACTCCGACTTCTGTAGCTCATTCCATTTTGTGGGTCTTGTTCCTTTCTGTACGAACACGCTTCCCTCTGGTGGGTTCTTGATTACGTTGGGGTTTTTCGCGTTGCTCGTGGTGAACAGGCTGCTCTGTTTTCGCGGAAGAGTTTCTTCTGGAAATCGAGGTGGGAGACCGTTGATTCCGAAGTGGGTGTTCTGA

Protein sequence

MVHARDRNKRGTSGRCIVTLHRMNAPNVPQSGHAWNVTNNIGVDVWCNRIDPSKSTKLCGDRHNAKLAKVATQQNASSLKTGFYGAVALSLVKIKGNSDFCSSFHFVGLVPFCTNTLPSGGFLITLGFFALLVVNRLLCFRGRVSSGNRGGRPLIPKWVF

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh16G007490.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G007490.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G007490.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G007490.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G007490	CmoCh16G007490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G007490.1:exon:7611	CmoCh16G007490.1:exon:7611	exon
CmoCh16G007490.1:exon:7610	CmoCh16G007490.1:exon:7610	exon
CmoCh16G007490.1:exon:7609	CmoCh16G007490.1:exon:7609	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G007490.1:cds	CmoCh16G007490.1:cds_3	CDS
CmoCh16G007490.1:cds	CmoCh16G007490.1:cds_2	CDS
CmoCh16G007490.1:cds	CmoCh16G007490.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G007490.1	CmoCh16G007490.1-protein	polypeptide