CmoCh15G001820.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G001820.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription elongation factor TFIIS-like
Location	Cmo_Chr15: 839088 .. 843750 (+)
Sequence length	1524
RNA-Seq Expression	CmoCh15G001820.1
Synteny	CmoCh15G001820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATGTAGTGAATTTTTTGACTCTCTATGTTAGAATAAAGGATGCATCGATCTTCTTGAAAGTTGATTCTTGATTCCGTTAACGATTTCTATTTCTAGTCTTGGACGATTTACCGTAGCGTGTTTGTGATTTCTATGTTCACAATTCATCTTTGACTTATTTTGCCACCAGCGTTAATTTTGGTTACGGGATTAGATATCATTTTCAGCTGGCCATTCGCAGTTGAGATCTGGAAGAAATGTGTTCCTATGATCTATGGTGTCTATGGGCAATACGTATCGTGAGGATCTGAGAGAGCTATTTATTTATTTATATTTGTTTTCTTTTACTATTTTCTTCTCTTTCGTCATTGATCGAGCACAAGATTATACTGGCCCTGTCGGAACTCTTTTTGAATTATCAAGCCTCTCAGGGTTTCTTCACACCGTGTTTTCGAAAAGCATATTTGTGTGTATATCTATGTGTTCGGTAATCATTTCTTATTTTTCTCTCTAGTATGAAGCAAATTGAAAACAAAGATTAGGAGATTTATTTTCTCTTCGAAGTTCAAAACATTCTCCGATGGGATCAGAATGAAGTAACCATGCCGCCAAAGACATGCCCTTTCATAGAATGACAACATTTGGATGTAGTTGCTTTACATTGAATGTCTCAATATAGATCTTGTTCAAGTAACGTCGTATCTCTCTATATAAAACACCATATTAGGCCTTGAATCTCTCGTGTTTCTAAAAATTTGTAGTAGGTCATTATCTGTGGCTTGACGTCTTGCCATCCCCATGATCACACTCTCTGGTTCCACATCGAAAGTGTGGTATACTTCCGAATCCAGTTCCAAGTTCAATTAACTTCAATGTTATGGAGCTTGTAGCTACTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTGTAATTGGCTTCTACCTTTGGTTTAATCCAGTAGTGAACTTTCCAGTAACTGGTGCAAATTTCCAGTGATTCTGCCGTTCAAAATCCCAATCCTGACTGCCATCAAGACTATCAATCACTCCTTGGATCTGGCACTCATTTTGTATCTAAGTATTGGCATGCTCAAAACATGTTCTTTCTATTTCATTTTTTTATCGAATCACCTTCTCTCACAATGTTACAATGTTTCTTTCTAGCATAGGAGGCTTTATAAGCCTCTCCGTAGGGTGAAGACCACACTGCATTTCTGCTATTATCAAACTCAAATTTGATCTTCCTTCTATCAACCAATCATATGTTTTATCCACTTTCTACTTTCCTCTAGGAATCCCCAAAATTGGAGGGCTCATGCCAAAGCTGATAGGGCCCATACAATTGGATTTAAGTTTTAACAATTAATGTCAATCTCAATTGGAAATGCTATGCTGTGTGCTAGAAAAAGACATAATTCTGTACATTGTTCCTAATTGTCTCAAGAGGCTGCAACCAAACTAAATTGTTTTGAGTTTTGAAATATTCATTCTCGTTCAAACAGTTGGTTTCAACTGATTCTGTACCGTGCTATTTTCTTTGTTGATAAAAAGGGTTTTTTCTTTTTTGTGTTATGCTGGAGATTTCAGTACCATTATATATCTATCTGTAGAGAATTAAGTGTATACAATCATTCCTCTTTCTTAGTACCATTAATATGTTTCGAATCTAACCATTCCCTTTTCTCTTTTGAAAAAACCCTGTGCAGCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAAATTGTTATTTGACTCGACCCAGCTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGGTAAACTGCAGAGTTCATTGGAATAACATGTTTTGTAATAGACTTTGTTTTTCATTAAACTGAGTTGGAATTTTATCGTTTTCAAGTGTGGTTGATGTTTTTTCTTATCCCTATTTACTTCTATTTTCTAGGACCTTTTCCTTTTCCCATGCCTCAGAGACCACAGCTTCTGTCTACTTTATAAAAACAATTTTAAAAATTTAATAAAATTTCCACATTTTTTTAGGAAAAGAATTTCGTTGAACAATCAAGAATTTAAATTCTATTTTGGCTGAGTAGAGACTAGTTTTTGAGAGATGAATTTATTTTTTGAAAAACAGAAATAAATTCAAATTTGTTTAAACATATAGAATAGGTGAATCAAGTAGTGGTTAAGTTTAATTATTTGTTAGAGTATTGTCATAATATGATTGGCTAAGCTAAACTAGATTTATATGAACGTATATATTATAAGGTTTAAATTTTTTTATACTTTTAAATTTATCGATGCTGAATTCTTTAATACATTTGTCCACATAATTCTTTAAGCATATATAAAAGAAAAAGGGCATATTTGTAAAGGTTAAAAATGTAATAAGTTCGATGATCTTGATGCGATAAAACTGCCTTGAATTGGCGAGAGATGATCCGGAAAACGACGTCGTTGCCAAAAACCCCATCCTCTTCTCTCGCAGTCTATGGATAAATGGGTAGATCTTACCATTATCCTGTACGCCACGTTTTTCGGCTCTGTCCGTCGGATCTAGCTCATCTACTTCTTCCTCGAGGGTTAATTTTTATCTCTGCTGCCTCCGCCGTCTCTCTGCTGAAAAGGGGGTTTTTCCTGTAGCCGATTGTGGTTGAGTTTCCCCTTTTCTGTTTTGGTTTTCTTTGATTTACTGTGGGATTGCGAGCGGTTTTCTGCTGGCGATTCAGTTCTCTGTAAGTGATGATACTCATTCGATATCGATTATTTGCCATCGGCAGTTGAATGTCTTTTAATTCGTGCTATTCTTTTGCTTGTTCATTGACAAACGAGGTCAAATGCGAGTTTGGTTGCAATACCCGATTTTGTATGCGTATGTTTGTACCTTTCCGTTTTCTTGTTGTTGTTGGGACCTGATTATTCTTTTCTTCGAATGTGTTGGATAGATAATATAAAAAATCCCAAGTTGGCAGTGAGTCGATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTTGACTCCAAATTCGTTTCTTTTGTTGATGGTAGATGGATAGTGAAGATGTAAACAGCCGACTTGTTCATAAATCATACATGGTTTCTATCATAAATTAAGCCTAAATTCATTGTTTGCTCGTTTACGAATTGGTTTCATGACGAGGCAAGTTCACTCTATTTCATCTGTGTTTTTTGAGTTCACATCCATATAACGAAGCCATCTATAAGTTGTGACCCTTTTAAGTTTTGGGGAGATAATTTATGTCTTGCTATGACATTTTCCTGTGAAATTGAGGTCACTTTGCCAGCGTTGATAGCTCCTGTATCTTGTCTTCTTTAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCTGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGATACTAACAAGAATAAGAAAAATGGGAACATCGACTGTGAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTTGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATCGGAAAGCGACATCTCGGGGAAAAACCCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

mRNA sequence

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATCTACTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAAATTGTTATTTGACTCGACCCAGCTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGTGAGTCGATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCTGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGATACTAACAAGAATAAGAAAAATGGGAACATCGACTGTGAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTTGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATCGGAAAGCGACATCTCGGGGAAAAACCCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Coding sequence (CDS)

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATCTACTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAAATTGTTATTTGACTCGACCCAGCTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGTGAGTCGATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCTGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGATACTAACAAGAATAAGAAAAATGGGAACATCGACTGTGAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTTGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATCGGAAAGCGACATCTCGGGGAAAAACCCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Protein sequence

MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQVFSFPKFIDLYYYFWFSEIYLLTEAGDPTCGIVLILYLLFLQSFPRPIVSSLHSTGSRKRSSTSHKRHKLLFDSTQLFVNKYQLIAANGESMENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of CmoCh15G001820.1 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.7e-107
Identity = 217/383 (56.66%), Postives = 273/383 (71.28%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKK-NGNIDCEESPKIGSPSAES----- 252
           R L KHP + I++ A+DL+EIWK++VI++T K KK  G   C+E+ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 253 -VKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVE 312
            VKV+K ++  S K  +V + E    N V +  K  R   DI   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 313 RIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 372
           ++ K+ +  S  K P+   +APPKLT+M+K  D  RDKIRELL EA  +V  EAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 373 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 432
            VNASDP+RVAVSVES+MFE  G STG+QK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 433 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 492
           +LI +S  DMASD+RK+EN +I++KALFDCER  A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 493 RSADEPMTTFVTCVNCNNHWKFC 508
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy Swiss-Prot
Match: Q148K0 (Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-29
Identity = 105/343 (30.61%), Postives = 157/343 (45.77%), Query Frame = 0


Query: 166 LDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPK-KKIQNYASDLIEIWKEIVIKDTNKN 225
           +D LR+LK  PVT  +L ST+VG  +  L K    +++   A  LI+ WK+++       
Sbjct: 28  MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL------- 87

Query: 226 KKNGNIDCEESPKIGSPSAESVKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSES 285
                             A   K  + R+  S+                TSS+K +    
Sbjct: 88  -----------------DASDAKARERRRGGSLP---------------TSSSKEASEAQ 147

Query: 286 DISGKNPVKVEKTDSVVKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIR 345
           D S K P                 E  R+    + ++ P  P        + DA R K R
Sbjct: 148 DPSRKRP-----------------ELPRMPSTPRITTFPPVP-------VTCDAVRTKCR 207

Query: 346 ELLFEAFSKVPSEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNL 405
           E+L  A      + D D +     +D   +A  +E  +F + G +    K + RS + NL
Sbjct: 208 EMLTAAL-----QTDHDHV--AIGADCECLAGQIEECIFRDVGNTDMKYKNRVRSRLSNL 267

Query: 406 KDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATT 465
           KD KNP  RRKVL G I P+++  M++ +MASD+ K   + + ++A+ + + A      T
Sbjct: 268 KDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQT 300

Query: 466 DQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 508
           D F CG+C ++  TY Q+QTRS+DEPMTTFV C  C N WKFC
Sbjct: 328 DLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy Swiss-Prot
Match: P20232 (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-29
Identity = 112/372 (30.11%), Postives = 162/372 (43.55%), Query Frame = 0


Query: 139 ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 198
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 199 K-KKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFRKSSSM 258
           K  ++   A  LI+ WK  +                 SP   +P+  S K      SS+ 
Sbjct: 66  KDDEVIALAKTLIKNWKRFL----------------ASPAPTTPNNSSAKEGSSNNSSAS 125

Query: 259 KVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKRISIEK 318
           K               TS+AK   S S ISGK+      +           +EK+ S   
Sbjct: 126 K--------------STSAAK---SSSSISGKDKSSSSSSSK--------DKEKKGSTSS 185

Query: 319 KPSSGPDAPPKLTSMIKSKDAARDKIRELLFEA--FSKVPSEADEDVMDEVNASDPIRVA 378
             +S P             DA R K RE+L  A    +VP              +P  +A
Sbjct: 186 SQTSFPSG--------GMTDAVRIKCREMLATALKIGEVPE----------GCGEPEEMA 245

Query: 379 VSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMA 438
             +E  ++  +  +    K + RS + NLKDPKNP  R   + G +  ++L  M+  +MA
Sbjct: 246 AELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMA 305

Query: 439 SDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV 498
           SD+ K+  E+  ++A+ D + A      TD  KC +C +R  TY QLQTRSADEPMTTFV
Sbjct: 306 SDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFV 313

Query: 499 TCVNCNNHWKFC 508
            C  C N WKFC
Sbjct: 366 MCNECGNRWKFC 313

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy Swiss-Prot
Match: Q2KI09 (Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-29
Identity = 118/380 (31.05%), Postives = 175/380 (46.05%), Query Frame = 0


Query: 139 ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 198
           EL   AKK     A    +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEG------ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 199 PKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEK------- 258
             K++   A  LI  WK++             +D   +PK G    E VK +K       
Sbjct: 66  SNKEVVALAKVLIRNWKQL-------------LDSPATPK-GEKGEERVKAKKKEKGLDC 125

Query: 259 --FRKSSSMKVERVSQVEQ-FDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIV 318
             ++  +S+   R  +VE+  DR         S+S +  S K P       S  K E   
Sbjct: 126 SDWKPETSLSPPRKKRVEEPKDRRDSVD----SKSSATSSPKRPSMERSNSSKSKAETPR 185

Query: 319 KEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVN 378
                 S    PS    AP  LT      D+ RDK  E+L  A      +AD+D  D   
Sbjct: 186 TPSSPSSPTFAPSVCLLAPCYLTG-----DSVRDKCVEMLSAAL-----KADDDYKDYGV 245

Query: 379 ASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLI 438
             D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I    + 
Sbjct: 246 NCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIA 305

Query: 439 NMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 498
            M+  +MASD+ +     + Q+A+ + + A     TTD F+C +C ++  TY Q+QTRSA
Sbjct: 306 KMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSA 349

Query: 499 DEPMTTFVTCVNCNNHWKFC 508
           DEPMTTFV C  C N WKFC
Sbjct: 366 DEPMTTFVLCNECGNRWKFC 349

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy Swiss-Prot
Match: P23881 (Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-28
Identity = 114/383 (29.77%), Postives = 176/383 (45.95%), Query Frame = 0


Query: 139 ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 198
           EL   AKK     +    +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVSRKKTEG------ALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 199 PKKKIQNYASDLIEIWKEIV---------IKDTNKNKKNGNIDCEE-SPKIG-SPSAESV 258
             K++ + A  LI+ WK ++          ++  K KK   + C +  P+ G SP     
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPR--- 125

Query: 259 KVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERI 318
                +K       R   V+   R+  TSS K    E   S K+ V+   T S       
Sbjct: 126 -----KKGGGEPKTRRDSVD--SRSSTTSSPKRPSLERSNSSKSKVETPTTPS------- 185

Query: 319 VKEEKRISIEKKPSSGPDAPP--KLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 378
                       PS+   AP    L     + D+ RDK  E+L  A      +A+++  D
Sbjct: 186 -----------SPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKD 245

Query: 379 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 438
                D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I PE
Sbjct: 246 YGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPE 305

Query: 439 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 498
            +  M+  +MASD+ +     + Q+A+ + + A     TTD  +C +C ++  TY Q+QT
Sbjct: 306 LIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQT 347

Query: 499 RSADEPMTTFVTCVNCNNHWKFC 508
           RSADEPMTTFV C  C N WKFC
Sbjct: 366 RSADEPMTTFVLCNECGNRWKFC 347

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy TrEMBL
Match: A0A6J1FF11 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111444888 PE=4 SV=1)

HSP 1 Score: 723.4 bits (1866), Expect = 6.6e-205
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy TrEMBL
Match: A0A6J1JZ25 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111489165 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 2.6e-193
Identity = 361/376 (96.01%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSN-DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME+ELVELFEAAKKAADAAAAPSN DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL
Sbjct: 1   MESELVELFEAAKKAADAAAAPSNDDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKF 252
           RHLTKHPKKKIQ YASDLIEIWKEIVIK+TNKNKKNGNID +E PKIGSPSAESVKVEKF
Sbjct: 61  RHLTKHPKKKIQYYASDLIEIWKEIVIKETNKNKKNGNIDSKELPKIGSPSAESVKVEKF 120

Query: 253 RKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEK 312
           RKSSSMKVERVSQVEQFDRNGV SSAKFSRSESDIS +N VKVEKTDSVVKVERIVKEEK
Sbjct: 121 RKSSSMKVERVSQVEQFDRNGVASSAKFSRSESDISVENSVKVEKTDSVVKVERIVKEEK 180

Query: 313 RISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 372
           RIS EKKP SG DAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP
Sbjct: 181 RISKEKKPLSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 373 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 432
           IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300

Query: 433 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 492
           ADMASDQRKRENEEIEQKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 493 TTFVTCVNCNNHWKFC 508
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy TrEMBL
Match: A0A6J1BWY6 (transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC111006416 PE=4 SV=1)

HSP 1 Score: 655.2 bits (1689), Expect = 2.2e-184
Identity = 341/377 (90.45%), Postives = 359/377 (95.23%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQ+YASDLIE+WKEIVIK+TNKNKKNGN +C+ESPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSV--VKVERIVKEE 312
           KSSSMKVERVS+VEQ DRNG TSS K+SRSES IS KN VKVEKTDS+  VK ER+VKEE
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKVEKTDSLEKVKAERVVKEE 180

Query: 313 KRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASD 372
           K+ISI+K+PSSG  APPKLTSMIKSKDAARDKIRELL EAFSKVP EADEDV+DEVNASD
Sbjct: 181 KKISIDKRPSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

Query: 373 PIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMS 432
           P+RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRR VL+G IKPERLINMS
Sbjct: 241 PVRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRNVLVGHIKPERLINMS 300

Query: 433 TADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 492
           TA+MASDQRKRENEEIEQKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP
Sbjct: 301 TAEMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 360

Query: 493 MTTFVTCVNCNNHWKFC 508
           MTTFVTCVNCNNHWKFC
Sbjct: 361 MTTFVTCVNCNNHWKFC 377

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 1.6e-182
Identity = 337/375 (89.87%), Postives = 353/375 (94.13%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVS+VEQFDRNG TSS K+S+SES +S +N VKVEKTDS+VKVER+VKE   
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKE--- 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
              EKKPSSG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADE+ MDEVNASDPI
Sbjct: 181 ---EKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of CmoCh15G001820.1 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 647.9 bits (1670), Expect = 3.5e-182
Identity = 336/375 (89.60%), Postives = 351/375 (93.60%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPS ESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVS+VEQFDRNG TSS K+SRSES +S  + VK EKTDSVVKVERIVKE   
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKE--- 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
              EKKPSSG  APPKLTSM+KSKDAARDKIRELLFEAFSKVP EADEDVMDEVNASDPI
Sbjct: 181 ---EKKPSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVA+SVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INM+TA
Sbjct: 241 RVAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of CmoCh15G001820.1 vs. NCBI nr
Match: XP_022938772.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 723.4 bits (1866), Expect = 1.4e-204
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of CmoCh15G001820.1 vs. NCBI nr
Match: KAG6578486.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 717.2 bits (1850), Expect = 9.8e-203
Identity = 372/375 (99.20%), Postives = 374/375 (99.73%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQNYASDLIEIWKEIVIK+TNKNKKNGNIDC+ESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKN VKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of CmoCh15G001820.1 vs. NCBI nr
Match: KAG7016050.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 714.9 bits (1844), Expect = 4.8e-202
Identity = 371/375 (98.93%), Postives = 373/375 (99.47%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQNYASDLIEIWKEIVIK+TNKNKKNGNIDC+ESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVSQVEQFDRNGVTSSAKFSR ESDISGKN VKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
           ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 375

[Close]

BLAST of CmoCh15G001820.1 vs. NCBI nr
Match: XP_023551413.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 698.7 bits (1802), Expect = 3.6e-197
Identity = 365/376 (97.07%), Postives = 371/376 (98.67%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQNYASDLIEIWKEIVIK+TNKNKKNGNIDC+ESPKIGSPSAESVKVEKFR
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVS+VEQF+ NGVTSSAKFSRSESDIS KN VKVEKTDSVVKVERIVKEEKR
Sbjct: 121 KSSSMKVERVSRVEQFNGNGVTSSAKFSRSESDISEKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 313 ISIEKKP-SSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 372
           ISIEKKP SSG DAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP
Sbjct: 181 ISIEKKPSSSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 373 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 432
           IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGL+KP+RLINMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLVKPDRLINMST 300

Query: 433 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 492
           ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 493 TTFVTCVNCNNHWKFC 508
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

[Close]

BLAST of CmoCh15G001820.1 vs. NCBI nr
Match: XP_022993019.1 (transcription elongation factor TFIIS-like [Cucurbita maxima])

HSP 1 Score: 684.9 bits (1766), Expect = 5.4e-193
Identity = 361/376 (96.01%), Postives = 365/376 (97.07%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPSN-DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME+ELVELFEAAKKAADAAAAPSN DGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL
Sbjct: 1   MESELVELFEAAKKAADAAAAPSNDDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKF 252
           RHLTKHPKKKIQ YASDLIEIWKEIVIK+TNKNKKNGNID +E PKIGSPSAESVKVEKF
Sbjct: 61  RHLTKHPKKKIQYYASDLIEIWKEIVIKETNKNKKNGNIDSKELPKIGSPSAESVKVEKF 120

Query: 253 RKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEK 312
           RKSSSMKVERVSQVEQFDRNGV SSAKFSRSESDIS +N VKVEKTDSVVKVERIVKEEK
Sbjct: 121 RKSSSMKVERVSQVEQFDRNGVASSAKFSRSESDISVENSVKVEKTDSVVKVERIVKEEK 180

Query: 313 RISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 372
           RIS EKKP SG DAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP
Sbjct: 181 RISKEKKPLSGTDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDP 240

Query: 373 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 432
           IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST
Sbjct: 241 IRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMST 300

Query: 433 ADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 492
           ADMASDQRKRENEEIEQKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM
Sbjct: 301 ADMASDQRKRENEEIEQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 360

Query: 493 TTFVTCVNCNNHWKFC 508
           TTFVTCVNCNNHWKFC
Sbjct: 361 TTFVTCVNCNNHWKFC 376

[Close]

BLAST of CmoCh15G001820.1 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 390.6 bits (1002), Expect = 2.0e-108
Identity = 217/383 (56.66%), Postives = 273/383 (71.28%), Query Frame = 0


Query: 133 MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKK-NGNIDCEESPKIGSPSAES----- 252
           R L KHP + I++ A+DL+EIWK++VI++T K KK  G   C+E+ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 253 -VKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVE 312
            VKV+K ++  S K  +V + E    N V +  K  R   DI   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 313 RIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 372
           ++ K+ +  S  K P+   +APPKLT+M+K  D  RDKIRELL EA  +V  EAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 373 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 432
            VNASDP+RVAVSVES+MFE  G STG+QK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 433 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 492
           +LI +S  DMASD+RK+EN +I++KALFDCER  A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 493 RSADEPMTTFVTCVNCNNHWKFC 508
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of CmoCh15G001820.1 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 104.4 bits (259), Expect = 2.8e-22
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 327 PKLTSMIKSKDAARDKIRELLFEAFSKVPSE-ADEDVMDEVNASDPIRVAVSVESVMFEN 386
           P  ++M K+ D+ RDK+RE+L  +  KV SE  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 387 WGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEE 446
            G   G  K KYRSI+FN+ D  NPD RRKVL+G I  ERL+ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 447 IEQKALF 453
           I++ A F
Sbjct: 714 IKENARF 720

[Close]

BLAST of CmoCh15G001820.1 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-21
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 327 PKLTSMIKSKDAARDKIRELLFEAFSKVPSE-ADEDVMDEVNASDPIRVAVSVESVMFEN 386
           P   +M K+ D+ RDK+RE+L  + +KV SE  D ++   V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 387 WGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMAS 437
            G   G QK KYRSI+FN+ D  NPD RRKVLLG I  ERL+ M   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of CmoCh15G001820.1 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 73.6 bits (179), Expect = 5.3e-13
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 327 PKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDE--VNASDPIRVAVSVESVMFE 386
           P  ++M K+ D+ RDK+ E+L  + +KV +E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 387 NWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENE 446
                         SI+FN+ D  NPD RRKVL+G I  ERL+ M   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 215

Query: 447 EIEQKALF 453
            I+++A F
Sbjct: 224 RIKERARF 215

[Close]

BLAST of CmoCh15G001820.1 vs. TAIR 10
Match: AT2G33090.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-09
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 134 ENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 193
           + + +ELFE AKK+AD A A        E S C+D L  L +FP++ + + + ++  RL 
Sbjct: 151 DTDTLELFEIAKKSADFANAKGILASEVETSMCVDTLTLLLEFPISARDMETRKLMVRLE 210

Query: 194 HLTKHPKKKIQNYASDLIEIWKEIV 218
           HLTKH  +KI N AS L++ W+E +
Sbjct: 211 HLTKHKNRKICNSASKLLQCWRESI 235

The following BLAST results are available for this feature:

BLAST of CmoCh15G001820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	2.7e-107	56.66	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
Q148K0	2.3e-29	30.61	Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 ...	[more]
P20232	3.0e-29	30.11	Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS...	[more]
Q2KI09	5.1e-29	31.05	Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 ...	[more]
P23881	1.5e-28	29.77	Transcription elongation factor A protein 3 OS=Mus musculus OX=10090 GN=Tcea3 PE...	[more]

BLAST of CmoCh15G001820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF11	6.6e-205	100.00	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JZ25	2.6e-193	96.01	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1BWY6	2.2e-184	90.45	transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A0A0KDH9	1.6e-182	89.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A5A7U9K1	3.5e-182	89.60	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CmoCh15G001820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938772.1	1.4e-204	100.00	transcription elongation factor TFIIS-like [Cucurbita moschata]	[more]
KAG6578486.1	9.8e-203	99.20	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7016050.1	4.8e-202	98.93	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_023551413.1	3.6e-197	97.07	transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993019.1	5.4e-193	96.01	transcription elongation factor TFIIS-like [Cucurbita maxima]	[more]

BLAST of CmoCh15G001820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	2.0e-108	56.66	transcript elongation factor IIS	[more]
AT2G42730.1	2.8e-22	47.24	F-box family protein	[more]
AT4G18720.1	1.8e-21	52.25	Transcription factor IIS protein	[more]
AT5G42325.1	5.3e-13	37.50	Transcription factor IIS protein	[more]
AT2G33090.1	3.5e-09	40.00	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 467..506 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 467..505 e-value: 1.6E-19 score: 69.4
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 469..504
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 465..505 score: 14.636859
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 140..219 e-value: 5.2E-25 score: 99.1
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 337..445 e-value: 2.1E-36 score: 136.9
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 337..453 e-value: 1.2E-32 score: 112.7
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 339..462 score: 35.321613
None	No IPR available	GENE3D	2.20.25.10		coord: 436..507 e-value: 9.6E-28 score: 97.9
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 133..507
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 133..507
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 156..217 e-value: 5.32793E-18 score: 76.5782
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 460..506 e-value: 4.40534E-30 score: 109.233
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 446..505
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 168..217 e-value: 1.5E-10 score: 40.9
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 142..220 score: 19.917051
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 323..435 e-value: 3.2E-27 score: 97.0
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 323..437
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 126..231 e-value: 8.9E-23 score: 81.9
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 159..228
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 144..507 e-value: 2.5E-98 score: 327.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh15G001820	CmoCh15G001820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G001820.1:exon:528	CmoCh15G001820.1:exon:528	exon
CmoCh15G001820.1:exon:529	CmoCh15G001820.1:exon:529	exon
CmoCh15G001820.1:exon:530	CmoCh15G001820.1:exon:530	exon
CmoCh15G001820.1:exon:531	CmoCh15G001820.1:exon:531	exon
CmoCh15G001820.1:exon:532	CmoCh15G001820.1:exon:532	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G001820.1:cds	CmoCh15G001820.1:cds	CDS
CmoCh15G001820.1:cds	CmoCh15G001820.1:cds_2	CDS
CmoCh15G001820.1:cds	CmoCh15G001820.1:cds_3	CDS
CmoCh15G001820.1:cds	CmoCh15G001820.1:cds_4	CDS
CmoCh15G001820.1:cds	CmoCh15G001820.1:cds_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh15G001820.1	CmoCh15G001820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003746	translation elongation factor activity