CmoCh14G005890.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G005890.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box protein CPR30-like
Location	Cmo_Chr14: 2996052 .. 2996896 (+)
Sequence length	774
RNA-Seq Expression	CmoCh14G005890.1
Synteny	CmoCh14G005890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGTGCGATGTCGATTTGCCATCCGATGAGTCTTTTCGATATTCCGAAATCCGTGGCCATTCTCACGGTTTAGTCTGCCTCACCAATCTTCGTAGGGACATTTTCCTATGCAATCCAGCCACCAGAGAGTTTCGAAAACTACCGCCATCGATTCTCCTCCTCACCGAACCCCCGGATGTCTTTGAAGGGATCGATTCCTCCACCAACGCCATCGGATTTGGGTACGATTCGAAATCTATGGATTTCAAGGTGGTTAGGGTGGTGGATTTTATACAACCACCTCTCATTTTTCACTCTACTAGGATTGAAATTTATGATTTGAGCAAAGATAGATGGAGAGAAATTCATACTCCTGTTTGTGGTCGTGCAAAGTGGACGCCTTCCTTTGATAGATATCAGGAAGGAACATTTTATTGGTGGGCGGCTACAGATGAAGATGAAGGGGAAGGGGAAGAAATTATACTGTCATTTGACATGAGTGAGGAGGTTTTCGGGCTAATTCCGATGCCAGAGAGTTTGAAGGGGGAGAGACAAGGGTTCGATTGTTATATTTCATTACCCATGGAAAGGGGATGTGAAAGAGTTTGACATTTGGGAGATGGAGAAGGATGATTTGGTGGGTTTCATGGTCAAAGCTGATTACAATTGGGCCTCTTTTTGGAATTGATAAGCCATTAGCGTTTGTGGGTTCTAATTTACTCTTAATGGAAGCAATGGAAGGGCATGTGGTTTTGTACAATATTCGAGAGCTTCCCATAAAAGGGGCACCCAGAAGTGTTTCAAGCTACTCAAGCTACTACTTTTGTGGAGAGTATGATATCGGTGAAAGGAGGAAATAA

mRNA sequence

ATGGATCTGTGCGATGTCGATTTGCCATCCGATGAGTCTTTTCGATATTCCGAAATCCGTGGCCATTCTCACGGTTTAGTCTGCCTCACCAATCTTCGTAGGGACATTTTCCTATGCAATCCAGCCACCAGAGAGTTTCGAAAACTACCGCCATCGATTCTCCTCCTCACCGAACCCCCGGATGTCTTTGAAGGGATCGATTCCTCCACCAACGCCATCGGATTTGGGTACGATTCGAAATCTATGGATTTCAAGGTGGTTAGGGTGGTGGATTTTATACAACCACCTCTCATTTTTCACTCTACTAGGATTGAAATTTATGATTTGAGCAAAGATAGATGGAGAGAAATTCATACTCCTGTTTGTGGTCGTGCAAAGTGGACGCCTTCCTTTGATAGATATCAGGAAGGAACATTTTATTGGTGGGCGGCTACAGATGAAGATGAAGGGGAAGGGGAAGAAATTATACTGTCATTTGACATGAGTGAGGAGGTTTTCGGGCTAATTCCGATGCCAGAGAGTTTGAAGGGGGAGAGACAAGGGATGATTTGGTGGGTTTCATGGTCAAAGCTGATTACAATTGGGCCTCTTTTTGGAATTGATAAGCCATTAGCGTTTGTGGGTTCTAATTTACTCTTAATGGAAGCAATGGAAGGGCATGTGGTTTTGTACAATATTCGAGAGCTTCCCATAAAAGGGGCACCCAGAAGTGTTTCAAGCTACTCAAGCTACTACTTTTGTGGAGAGTATGATATCGGTGAAAGGAGGAAATAA

Coding sequence (CDS)

ATGGATCTGTGCGATGTCGATTTGCCATCCGATGAGTCTTTTCGATATTCCGAAATCCGTGGCCATTCTCACGGTTTAGTCTGCCTCACCAATCTTCGTAGGGACATTTTCCTATGCAATCCAGCCACCAGAGAGTTTCGAAAACTACCGCCATCGATTCTCCTCCTCACCGAACCCCCGGATGTCTTTGAAGGGATCGATTCCTCCACCAACGCCATCGGATTTGGGTACGATTCGAAATCTATGGATTTCAAGGTGGTTAGGGTGGTGGATTTTATACAACCACCTCTCATTTTTCACTCTACTAGGATTGAAATTTATGATTTGAGCAAAGATAGATGGAGAGAAATTCATACTCCTGTTTGTGGTCGTGCAAAGTGGACGCCTTCCTTTGATAGATATCAGGAAGGAACATTTTATTGGTGGGCGGCTACAGATGAAGATGAAGGGGAAGGGGAAGAAATTATACTGTCATTTGACATGAGTGAGGAGGTTTTCGGGCTAATTCCGATGCCAGAGAGTTTGAAGGGGGAGAGACAAGGGATGATTTGGTGGGTTTCATGGTCAAAGCTGATTACAATTGGGCCTCTTTTTGGAATTGATAAGCCATTAGCGTTTGTGGGTTCTAATTTACTCTTAATGGAAGCAATGGAAGGGCATGTGGTTTTGTACAATATTCGAGAGCTTCCCATAAAAGGGGCACCCAGAAGTGTTTCAAGCTACTCAAGCTACTACTTTTGTGGAGAGTATGATATCGGTGAAAGGAGGAAATAA

Protein sequence

MDLCDVDLPSDESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGIDSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAKWTPSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLKGERQGMIWWVSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYNIRELPIKGAPRSVSSYSSYYFCGEYDIGERRK

Homology

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy Swiss-Prot
Match: Q8GXC7 (F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-10
Identity = 58/239 (24.27%), Postives = 100/239 (41.84%), Query Frame = 0


Query: 18  EIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGIDSSTNAIGFGY 77
           EI G S+GLVC++     +FL NP T + ++LP +       P   E    +    GFG+
Sbjct: 164 EIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENF-----RPKSVEYERDNFQTYGFGF 223

Query: 78  DSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAKWTPSFDRYQEG 137
           D  + D+K+V++V   +  L        +Y L  D WR I          + +   +  G
Sbjct: 224 DGLTDDYKLVKLVATSEDIL-----DASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNG 283

Query: 138 TFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLK-----------GERQGMIW-- 197
             +W      +    + ++++FD+  E F  +P+P+  +           G   G +   
Sbjct: 284 AIHW---VFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV 343

Query: 198 ----------WV--------SWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYN 226
                     WV        SWS+ I I  L+   KPL    ++  ++  ++G +VLYN
Sbjct: 344 NSCYDVHDDIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYN 388

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy Swiss-Prot
Match: O04488 (F-box/LRR-repeat/kelch-repeat protein At1g09650 OS=Arabidopsis thaliana OX=3702 GN=At1g09650 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.6e-09
Identity = 47/161 (29.19%), Postives = 77/161 (47.83%), Query Frame = 0


Query: 11  DESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSIL--LLTEPPDVFEGIDS 70
           +E   YS  +    GLVCL +  +  F+ NPATR +  LP   L  LL    D F  +  
Sbjct: 103 EEDKEYSVSQDSCDGLVCLFDKFKSGFVFNPATRWYHPLPLCQLQQLLIAIGDGFYDLGY 162

Query: 71  STNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAKWT 130
             + +GFG D  +  +K V + + I+  L  ++T  E++D S + WR +      R    
Sbjct: 163 RVSRLGFGKDKLTGTYKPVWLYNSIEIGL-ENATTCEVFDFSTNAWRYVSPAAPYRIVGC 222

Query: 131 PSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLI 170
           P+     +G+ +W+   +E +      ILSFD+  E F ++
Sbjct: 223 PA-PVCVDGSLHWFTECEETK------ILSFDLHTETFQVV 255

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy Swiss-Prot
Match: Q9SU30 (F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 17  SEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGIDSSTNA---I 76
           +E+ G S+GL+ L+N   D+ + NP+TR+  +LPPS + L   PD      SST      
Sbjct: 89  TEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDL---PD-----GSSTRGYVFY 148

Query: 77  GFGYDSKSMDFKVVRVVDF---IQPPL-IFHSTRIEIYDLSKDRWREIHT 120
           G GYDS S D+KVVR+V F    +  L       ++++ L K+ W+ I +
Sbjct: 149 GLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIES 190

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy Swiss-Prot
Match: Q9LJC0 (Putative F-box protein At3g21120 OS=Arabidopsis thaliana OX=3702 GN=At3g21120 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 43/171 (25.15%), Postives = 71/171 (41.52%), Query Frame = 0


Query: 9   PSDESFRYSEIRG--HSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGI 68
           P   S    +IR   H  GL+      R + + NP + E + + P               
Sbjct: 92  PLSNSSEEVDIRNAFHCDGLLLCCTKDRRLVVWNPCSGETKWIQP------------RNS 151

Query: 69  DSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAK 128
              ++    GYD++S  +K++R+     P   FH    E+YD +   WR +        +
Sbjct: 152 YKESDLYALGYDNRSSSYKILRMHPVGNP---FH-IESEVYDFASHSWRSVGVTTDFHIQ 211

Query: 129 WTPSFDRYQEGTFYWWA-ATDEDEGEGEEIILSFDMSEEVFGLIPMPESLK 177
              S+    +GT YW+A + D    +    +LSFD S E F  +P+P  +K
Sbjct: 212 TNESYGMNVKGTTYWFALSKDWWSSDDRRFLLSFDFSRERFQCLPLPADVK 246

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy Swiss-Prot
Match: Q9LPW2 (Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana OX=3702 GN=At1g12870 PE=4 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-05
Identity = 44/160 (27.50%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 25  GLVCLTNLR-RDIFLCNPATREFRKLPPS---ILLLTEPPDVFEGIDS-STNAIGFGYDS 84
           G+ C+ + + +DI++ NPATR FR+LPP+   I +    P +    D    N + F    
Sbjct: 136 GIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAF---V 195

Query: 85  KSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAKWTPSFDRYQE--- 144
           K+ D+K+V    ++        T+ E++D   + WR +    C      PS+  Y +   
Sbjct: 196 KATDYKLV----WLYNSDASRVTKCEVFDFKANAWRYL---TC-----IPSYRIYHDQKP 255

Query: 145 ----GTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMP 173
               GT YW+  T   E +    +++ D+  E+F L+P P
Sbjct: 256 ASANGTLYWFTETYNAEIK----VIALDIHTEIFRLLPKP 276

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy TrEMBL
Match: A0A6J1F5F2 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442473 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.3e-87
Identity = 171/280 (61.07%), Postives = 194/280 (69.29%), Query Frame = 0


Query: 5   DVDLPSDESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFE 64
           DVDLPSDE  RYS+I GHSHGL+CLT+L  DIFLCNPATREF+KLP SILLLTEPP   +
Sbjct: 92  DVDLPSDEDLRYSQICGHSHGLLCLTDLGTDIFLCNPATREFQKLPRSILLLTEPPTEPD 151

Query: 65  GIDSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGR 124
           G DSSTNA+GFGYDSKS DFKVVRVVDF++    F+ +R+EIYDLSKDRWREI TP+CG 
Sbjct: 152 GYDSSTNAVGFGYDSKSKDFKVVRVVDFMEGVCHFYPSRVEIYDLSKDRWREIETPICGS 211

Query: 125 AKWTPSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLK-------- 184
             W PSF+ Y EGT+YWWA T    GEGEEII SFDMSEEVFG I MPES K        
Sbjct: 212 VFWMPSFEMYHEGTYYWWAKT----GEGEEIIQSFDMSEEVFGRISMPESFKRGDRMYRS 271

Query: 185 -----------------GERQGMIW--------WVSWSKLITIGPLFGIDKPLAFVGSNL 244
                            GE++  IW         VSWSKL+TIGPLFGI KPL FVGSN 
Sbjct: 272 MGVLNGSIVLFHYPSEEGEKEFEIWEMEKDEFGGVSWSKLLTIGPLFGIGKPLVFVGSNE 331

Query: 245 LLMEAMEGHVVLYN-----IRELPIKGAPRSVSSYSSYYF 247
           LLME++EG VVLYN     +RELP+KG P    +  +  F
Sbjct: 332 LLMESIEGQVVLYNTRTKQLRELPMKGNPEEFQATQATVF 367

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy TrEMBL
Match: A0A6J1J6Y5 (F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.2e-85
Identity = 168/269 (62.45%), Postives = 188/269 (69.89%), Query Frame = 0


Query: 5   DVDLPSDESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFE 64
           DVD P DE FRY EIRGHSHGL+CLT+LRRDIFLCNPATREFRKLP SILLLTEPP   +
Sbjct: 91  DVDWPFDEDFRYFEIRGHSHGLLCLTDLRRDIFLCNPATREFRKLPQSILLLTEPPTEPD 150

Query: 65  GIDSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGR 124
           G DSSTNA+GFGYDSKS DFKVVRVV+F++ P  FH  R EIYDLSKDRWREI TP+CG 
Sbjct: 151 GYDSSTNAVGFGYDSKSKDFKVVRVVNFVEGPGYFHPPRAEIYDLSKDRWREIETPICGH 210

Query: 125 AKWTPSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLKGERQGM-- 184
             W PSF+ Y EGT+YWWA TD+     EEII SFDMSEEVF  IP+PES +GER+    
Sbjct: 211 VFWAPSFEMYHEGTYYWWADTDDK----EEIIQSFDMSEEVFRRIPVPESFEGERERYRS 270

Query: 185 -----------------------IW--------WVSWSKLITIGPLFGIDKPLAFVGSNL 236
                                  IW         VSWSKL+TIGPL GI+KPL FV S+ 
Sbjct: 271 MGILNGSIVLFHYPSRGDEREFDIWGMEKDEFGGVSWSKLLTIGPLRGIEKPLVFVSSDE 330

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy TrEMBL
Match: A0A6J1F6B1 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442474 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 7.7e-85
Identity = 167/269 (62.08%), Postives = 186/269 (69.14%), Query Frame = 0


Query: 5   DVDLPSDESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFE 64
           DVDLP DE FRY EIRGHSHGL+CLT+LRRDIFLCNPATREFRKLPPSILLLTEPP   +
Sbjct: 91  DVDLPFDEDFRYFEIRGHSHGLLCLTDLRRDIFLCNPATREFRKLPPSILLLTEPPTEPD 150

Query: 65  GIDSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGR 124
           G DSSTNA+GFGYDSKS DFKVVRVV+F++ P  FH  R+EIYDLSKDRWREI TP+CG 
Sbjct: 151 GYDSSTNAVGFGYDSKSRDFKVVRVVNFVEGPGYFHPPRVEIYDLSKDRWREIETPICGH 210

Query: 125 AKWTPSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLK-------- 184
             W PSF+ Y EGT+YWWA    D  EG EII SFDMSEEVFG I MPES +        
Sbjct: 211 VFWAPSFEMYHEGTYYWWA----DTNEGVEIIQSFDMSEEVFGQISMPESFEEKREKYRS 270

Query: 185 -----------------GERQGMIW--------WVSWSKLITIGPLFGIDKPLAFVGSNL 236
                             ER+  IW         VSWSKL+ IGPL GI+KPL FV  + 
Sbjct: 271 LGVLNGSIVLFRYPSRGDEREFDIWGMEKDEFGGVSWSKLLRIGPLRGIEKPLVFVSFDE 330

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy TrEMBL
Match: A0A6J1DYQ4 (F-box/kelch-repeat protein At3g23880-like OS=Momordica charantia OX=3673 GN=LOC111025827 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 155/269 (57.62%), Postives = 182/269 (67.66%), Query Frame = 0


Query: 5   DVDLPSDESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFE 64
           D DLP DE+F+Y E RGHSHGLVCL++LR DI LCNPATREFRKLPPSILLLTEPP+  +
Sbjct: 93  DFDLPFDENFQYFEFRGHSHGLVCLSDLRSDIILCNPATREFRKLPPSILLLTEPPEEPD 152

Query: 65  GIDSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGR 124
           G DSSTNA+GFGYD +S DFKVVRVV+F++ P  FH  R+E+YDL KDRWREI TPVCG 
Sbjct: 153 GYDSSTNAVGFGYDPRSRDFKVVRVVNFVEGPGFFHPPRVEVYDLGKDRWREIKTPVCGH 212

Query: 125 AKWTPSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLKGERQGM-- 184
             W PSFD Y EG +YWWA    D   G EII SFDMSEEVF  IP+PES +  R+    
Sbjct: 213 VFWAPSFDMYHEGMYYWWA----DAEGGSEIIQSFDMSEEVFRPIPVPESFEELREKYRS 272

Query: 185 --IW--------------------W---------VSWSKLITIGPLFGIDKPLAFVGSNL 236
             +W                    W         VSWSK +TIGP+ GI+KPL FV S+ 
Sbjct: 273 MGVWKGSIVLFHYLPGADEKTFDIWAMEKDNSGGVSWSKALTIGPVSGIEKPLVFVSSDE 332

[Close]

BLAST of CmoCh14G005890.1 vs. ExPASy TrEMBL
Match: A0A6J1F3M5 (F-box/kelch-repeat protein At3g23880-like OS=Cucurbita moschata OX=3662 GN=LOC111442078 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.5e-77
Identity = 161/279 (57.71%), Postives = 188/279 (67.38%), Query Frame = 0


Query: 5   DVDLPSDESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFE 64
           D+DLP DE FRY EIRGHSHGL+CLT+LR+DIFLCNPATREF+KLP SI LLTEP D F 
Sbjct: 92  DLDLPFDEDFRYFEIRGHSHGLLCLTDLRKDIFLCNPATREFQKLPRSI-LLTEPLDEFI 151

Query: 65  GIDSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWRE-------- 124
            I S TNA+GFGYDSKS DFKVVRVVDF++ P  FH +R+E+YDLSKD+WRE        
Sbjct: 152 RITSFTNAVGFGYDSKSRDFKVVRVVDFVELPCYFHPSRVEVYDLSKDKWREIQTPDRWS 211

Query: 125 -IHTPVCGRAKWTPSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESL 184
            I TPVCG+   TP F+ Y EGT+YWW A  + EG   E I SFDMSEEVF  IPMP+SL
Sbjct: 212 GIQTPVCGKVFGTPCFEMYHEGTYYWW-ANAKIEGR-TETIQSFDMSEEVFRPIPMPKSL 271

Query: 185 KGERQGM-------------------------IW--------WVSWSKLITIGPLFGIDK 237
           KG+R+                           +W         VSWSKL+TIGPL+GI+K
Sbjct: 272 KGKREAYRSMGVLNGSIVLFHYPWSGNGREFDVWGMENDESGGVSWSKLLTIGPLYGIEK 331

[Close]

BLAST of CmoCh14G005890.1 vs. TAIR 10
Match: AT3G06240.1 (F-box family protein )

HSP 1 Score: 65.9 bits (159), Expect = 5.6e-11
Identity = 58/239 (24.27%), Postives = 100/239 (41.84%), Query Frame = 0


Query: 18  EIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGIDSSTNAIGFGY 77
           EI G S+GLVC++     +FL NP T + ++LP +       P   E    +    GFG+
Sbjct: 164 EIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENF-----RPKSVEYERDNFQTYGFGF 223

Query: 78  DSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAKWTPSFDRYQEG 137
           D  + D+K+V++V   +  L        +Y L  D WR I          + +   +  G
Sbjct: 224 DGLTDDYKLVKLVATSEDIL-----DASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNG 283

Query: 138 TFYWWAATDEDEGEGEEIILSFDMSEEVFGLIPMPESLK-----------GERQGMIW-- 197
             +W      +    + ++++FD+  E F  +P+P+  +           G   G +   
Sbjct: 284 AIHW---VFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV 343

Query: 198 ----------WV--------SWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYN 226
                     WV        SWS+ I I  L+   KPL    ++  ++  ++G +VLYN
Sbjct: 344 NSCYDVHDDIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYN 388

[Close]

BLAST of CmoCh14G005890.1 vs. TAIR 10
Match: AT1G09650.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-10
Identity = 47/161 (29.19%), Postives = 77/161 (47.83%), Query Frame = 0


Query: 11  DESFRYSEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSIL--LLTEPPDVFEGIDS 70
           +E   YS  +    GLVCL +  +  F+ NPATR +  LP   L  LL    D F  +  
Sbjct: 103 EEDKEYSVSQDSCDGLVCLFDKFKSGFVFNPATRWYHPLPLCQLQQLLIAIGDGFYDLGY 162

Query: 71  STNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAKWT 130
             + +GFG D  +  +K V + + I+  L  ++T  E++D S + WR +      R    
Sbjct: 163 RVSRLGFGKDKLTGTYKPVWLYNSIEIGL-ENATTCEVFDFSTNAWRYVSPAAPYRIVGC 222

Query: 131 PSFDRYQEGTFYWWAATDEDEGEGEEIILSFDMSEEVFGLI 170
           P+     +G+ +W+   +E +      ILSFD+  E F ++
Sbjct: 223 PA-PVCVDGSLHWFTECEETK------ILSFDLHTETFQVV 255

[Close]

BLAST of CmoCh14G005890.1 vs. TAIR 10
Match: AT3G21120.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 43/171 (25.15%), Postives = 71/171 (41.52%), Query Frame = 0


Query: 9   PSDESFRYSEIRG--HSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGI 68
           P   S    +IR   H  GL+      R + + NP + E + + P               
Sbjct: 92  PLSNSSEEVDIRNAFHCDGLLLCCTKDRRLVVWNPCSGETKWIQP------------RNS 151

Query: 69  DSSTNAIGFGYDSKSMDFKVVRVVDFIQPPLIFHSTRIEIYDLSKDRWREIHTPVCGRAK 128
              ++    GYD++S  +K++R+     P   FH    E+YD +   WR +        +
Sbjct: 152 YKESDLYALGYDNRSSSYKILRMHPVGNP---FH-IESEVYDFASHSWRSVGVTTDFHIQ 211

Query: 129 WTPSFDRYQEGTFYWWA-ATDEDEGEGEEIILSFDMSEEVFGLIPMPESLK 177
              S+    +GT YW+A + D    +    +LSFD S E F  +P+P  +K
Sbjct: 212 TNESYGMNVKGTTYWFALSKDWWSSDDRRFLLSFDFSRERFQCLPLPADVK 246

[Close]

BLAST of CmoCh14G005890.1 vs. TAIR 10
Match: AT4G12560.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 17  SEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGIDSSTNA---I 76
           +E+ G S+GL+ L+N   D+ + NP+TR+  +LPPS + L   PD      SST      
Sbjct: 89  TEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDL---PD-----GSSTRGYVFY 148

Query: 77  GFGYDSKSMDFKVVRVVDF---IQPPL-IFHSTRIEIYDLSKDRWREIHT 120
           G GYDS S D+KVVR+V F    +  L       ++++ L K+ W+ I +
Sbjct: 149 GLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIES 190

[Close]

BLAST of CmoCh14G005890.1 vs. TAIR 10
Match: AT4G12560.2 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 17  SEIRGHSHGLVCLTNLRRDIFLCNPATREFRKLPPSILLLTEPPDVFEGIDSSTNA---I 76
           +E+ G S+GL+ L+N   D+ + NP+TR+  +LPPS + L   PD      SST      
Sbjct: 89  TEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDL---PD-----GSSTRGYVFY 148

Query: 77  GFGYDSKSMDFKVVRVVDF---IQPPL-IFHSTRIEIYDLSKDRWREIHT 120
           G GYDS S D+KVVR+V F    +  L       ++++ L K+ W+ I +
Sbjct: 149 GLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIES 190

The following BLAST results are available for this feature:

BLAST of CmoCh14G005890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXC7	7.9e-10	24.27	F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g0624...	[more]
O04488	6.6e-09	29.19	F-box/LRR-repeat/kelch-repeat protein At1g09650 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SU30	1.9e-08	36.36	F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2	[more]
Q9LJC0	1.9e-08	25.15	Putative F-box protein At3g21120 OS=Arabidopsis thaliana OX=3702 GN=At3g21120 PE...	[more]
Q9LPW2	2.6e-05	27.50	Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmoCh14G005890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5F2	6.3e-87	61.07	F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442473 PE=4 SV=1	[more]
A0A6J1J6Y5	1.2e-85	62.45	F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1	[more]
A0A6J1F6B1	7.7e-85	62.08	F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442474 PE=4 SV=1	[more]
A0A6J1DYQ4	1.3e-79	57.62	F-box/kelch-repeat protein At3g23880-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3M5	4.5e-77	57.71	F-box/kelch-repeat protein At3g23880-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CmoCh14G005890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06240.1	5.6e-11	24.27	F-box family protein	[more]
AT1G09650.1	4.7e-10	29.19	F-box and associated interaction domains-containing protein	[more]
AT3G21120.1	1.4e-09	25.15	F-box and associated interaction domains-containing protein	[more]
AT4G12560.1	1.4e-09	36.36	F-box and associated interaction domains-containing protein	[more]
AT4G12560.2	1.4e-09	36.36	F-box and associated interaction domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017451	F-box associated interaction domain	TIGRFAM	TIGR01640	TIGR01640	coord: 22..175 e-value: 2.7E-20 score: 70.7
None	No IPR available	PANTHER	PTHR47993:SF44	F-BOX PROTEIN CPR30-LIKE ISOFORM X1	coord: 7..178
None	No IPR available	PANTHER	PTHR47993:SF44	F-BOX PROTEIN CPR30-LIKE ISOFORM X1	coord: 187..240
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 7..178
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 187..240

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G005890	CmoCh14G005890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005890.1:exon:3725	CmoCh14G005890.1:exon:3725	exon
CmoCh14G005890.1:exon:3724	CmoCh14G005890.1:exon:3724	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005890.1:cds	CmoCh14G005890.1:cds	CDS
CmoCh14G005890.1:cds	CmoCh14G005890.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005890.1	CmoCh14G005890.1-protein	polypeptide