Sequences
The following sequences are available for this feature:
Legend: exon five_prime_UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTATTTGCGATCTCGTTCTGCCCCAAAAGGCGCTCCCGCCAATTTCGTACTAGAATCTTCCCTTCCCTGGATTCTTGTGAAATTTCCTGAAATTCTGCTTCGAAAGTAAAGAAGGAACTGCTTCAG CTTTTTTTTAATTTTGTGTA ATGAAGAAGAAACGTAGCCTGGCTACTGCGACGGATTGGAAGGCGGAAATCGAGAATGCGACTAGACAGGAAGCTGTACGTTCAAT ATACGCGATGTTGAAGGAACGAGTGTCTTCTCGTTATCCTAATGGCATGAGTTCGGAAAGAATTGCTAACCTTGCGATAGAATATGAGATGAGGTTCTTTAAGAACGCAAAACAGAG TTCTGACTTTTGGGATGCATTTGTGCTGTAA
TTCCTTATTTGCGATCTCGTTCTGCCCCAAAAGGCGCTCCCGCCAATTTCGTACTAGAATCTTCCCTTCCCTGGATTCTTGTGAAATTTCCTGAAATTCTGCTTCGAAAGTAAAGAAGGAACTGCTTCAGCTTTTTTTTAATTTTGTGTAATGAAGAAGAAACGTAGCCTGGCTACTGCGACGGATTGGAAGGCGGAAATCGAGAATGCGACTAGACAGGAAGCTGTACGTTCAATATACGCGATGTTGAAGGAACGAGTGTCTTCTCGTTATCCTAATGGCATGAGTTCGGAAAGAATTGCTAACCTTGCGATAGAATATGAGATGAGGTTCTTTAAGAACGCAAAACAGAGTTCTGACTTTTGGGATGCATTTGTGCTGTAA
ATGAAGAAGAAACGTAGCCTGGCTACTGCGACGGATTGGAAGGCGGAAATCGAGAATGCGACTAGACAGGAAGCTGTACGTTCAATATACGCGATGTTGAAGGAACGAGTGTCTTCTCGTTATCCTAATGGCATGAGTTCGGAAAGAATTGCTAACCTTGCGATAGAATATGAGATGAGGTTCTTTAAGAACGCAAAACAGAGTTCTGACTTTTGGGATGCATTTGTGCTGTAA
MKKKRSLATATDWKAEIENATRQEAVRSIYAMLKERVSSRYPNGMSSERIANLAIEYEMRFFKNAKQSSDFWDAFVL
Homology
BLAST of CmoCh14G005090.1 vs. ExPASy TrEMBL
Match:
A0A6J1J6S4 (uncharacterized protein LOC111482271 OS=Cucurbita maxima OX=3661 GN=LOC111482271 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A6J1J6S4 1.3e-06 88.57 uncharacterized protein LOC111482271 OS=Cucurbita maxima OX=3661 GN=LOC111482271... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
T T C C T T A T T T G C G A T C T C G T T C T G C C C C A A A A G G C G C T C C C G C C A A T T T C G T A C T A G A A T C T T C C C T T C C C T G G A T T C T T G T G A A A T T T C C T G A A A T T C T G C T T C G A A A G T A A A G A A G G A A C T G C T T C A G C T T T T T T T T A A T T T T G T G T A A T G A A G A A G A A A C G T A G C C T G G C T A C T G C G A C G G A T T G G A A G G C G G A A A T C G A G A A T G C G A C T A G A C A G G A A G C T G T A C G T T C A A T A T A C G C G A T G T T G A A G G A A C G A G T G T C T T C T C G T T A T C C T A A T G G C A T G A G T T C G G A A A G A A T T G C T A A C C T T G C G A T A G A A T A T G A G A T G A G G T T C T T T A A G A A C G C A A A A C A G A G T T C T G A C T T T T G G G A T G C A T T T G T G C T G T A A 50 100 150 200 250 300 350 Expect = 1.6E-6 / Score = 28.0 Sequence PF16987
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036546 Mediator complex subunit 15, KIX domain PFAM PF16987 KIX_2 coord: 11..72
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
CmoCh14G005090.1:exon:3572 CmoCh14G005090.1:exon:3572 exon CmoCh14G005090.1:exon:3573 CmoCh14G005090.1:exon:3573 exon CmoCh14G005090.1:exon:3574 CmoCh14G005090.1:exon:3574 exon CmoCh14G005090.1:exon:3575 CmoCh14G005090.1:exon:3575 exon
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Type
CmoCh14G005090.1:five_prime_utr CmoCh14G005090.1:five_prime_utr five_prime_UTR CmoCh14G005090.1:five_prime_utr CmoCh14G005090.1:five_prime_utr_2 five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
CmoCh14G005090.1:cds CmoCh14G005090.1:cds CDS CmoCh14G005090.1:cds CmoCh14G005090.1:cds_2 CDS CmoCh14G005090.1:cds CmoCh14G005090.1:cds_3 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
CmoCh14G005090.1 CmoCh14G005090.1-protein polypeptide
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0045893 positive regulation of transcription, DNA-templated
molecular_function
GO:0031490 chromatin DNA binding
molecular_function
GO:0003713 transcription coactivator activity
