CmoCh14G003790.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003790.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr14: 1759886 .. 1760344 (-)
Sequence length	459
RNA-Seq Expression	CmoCh14G003790.1
Synteny	CmoCh14G003790.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATACGGTTATGTTCCGTCCGACATTGTCGAACCCTCGACAAACTCTGATACCGAGCAAATCCGTCTCTGGCACTGTTCGGTTCGCAGAGGTAGCCGGTGGCACGACCGCAGAGTGTGCCGCTGTGTTCTGCTGTTGTCCTTGCATCGCCGTTAACTTCCTCATCCTCGCCATTTACAAGGTTCCGGCCGGCCTCTGCCGCCGCGCTCTGAGGACAAAACACCGACAGAGCGTGAAGAAGAAGAAAGCAATTCATCCGGCGAGGCTCGGCCGATTCCCTGGCGGAGTTCTCGACGATGGGGATATTCAGGTTATTACGATGGAAAAAACGGTGTACTCAGAGGAGGCGGAGAGGAAAGTGGTGGAACTTGAAAAGGAGATGTGGGATATTTTTTACAGTACTGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCAAGCTCTAATTGA

mRNA sequence

ATGTCGAATACGGTTATGTTCCGTCCGACATTGTCGAACCCTCGACAAACTCTGATACCGAGCAAATCCGTCTCTGGCACTGTTCGGTTCGCAGAGGTAGCCGGTGGCACGACCGCAGAGTGTGCCGCTGTGTTCTGCTGTTGTCCTTGCATCGCCGTTAACTTCCTCATCCTCGCCATTTACAAGGTTCCGGCCGGCCTCTGCCGCCGCGCTCTGAGGACAAAACACCGACAGAGCGTGAAGAAGAAGAAAGCAATTCATCCGGCGAGGCTCGGCCGATTCCCTGGCGGAGTTCTCGACGATGGGGATATTCAGGTTATTACGATGGAAAAAACGGTGTACTCAGAGGAGGCGGAGAGGAAAGTGGTGGAACTTGAAAAGGAGATGTGGGATATTTTTTACAGTACTGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCAAGCTCTAATTGA

Coding sequence (CDS)

ATGTCGAATACGGTTATGTTCCGTCCGACATTGTCGAACCCTCGACAAACTCTGATACCGAGCAAATCCGTCTCTGGCACTGTTCGGTTCGCAGAGGTAGCCGGTGGCACGACCGCAGAGTGTGCCGCTGTGTTCTGCTGTTGTCCTTGCATCGCCGTTAACTTCCTCATCCTCGCCATTTACAAGGTTCCGGCCGGCCTCTGCCGCCGCGCTCTGAGGACAAAACACCGACAGAGCGTGAAGAAGAAGAAAGCAATTCATCCGGCGAGGCTCGGCCGATTCCCTGGCGGAGTTCTCGACGATGGGGATATTCAGGTTATTACGATGGAAAAAACGGTGTACTCAGAGGAGGCGGAGAGGAAAGTGGTGGAACTTGAAAAGGAGATGTGGGATATTTTTTACAGTACTGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCAAGCTCTAATTGA

Protein sequence

MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAIYKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYSEEAERKVVELEKEMWDIFYSTGFWRSPSQRDQISSSN

Homology

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BLAST of CmoCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1F7R8 (uncharacterized protein LOC111441632 OS=Cucurbita moschata OX=3662 GN=LOC111441632 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI 60
           MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI
Sbjct: 1   MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI 60

Query: 61  YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYSEEAER 120
           YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYSEEAER
Sbjct: 61  YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYSEEAER 120

Query: 121 KVVELEKEMWDIFYSTGFWRSPSQRDQISSSN 153
           KVVELEKEMWDIFYSTGFWRSPSQRDQISSSN
Sbjct: 121 KVVELEKEMWDIFYSTGFWRSPSQRDQISSSN 152

[Close]

BLAST of CmoCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1J6H8 (uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 140/152 (92.11%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI 60
           MSN VMFRPTLSNPRQTLIPSKSVS TVRFAEVAGGTTAECAAVFCCCPCIAVNFL+LAI
Sbjct: 1   MSNAVMFRPTLSNPRQTLIPSKSVSSTVRFAEVAGGTTAECAAVFCCCPCIAVNFLVLAI 60

Query: 61  YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYSEEAER 120
           YK+PAGLCRRALRTKHRQ+VKKKK IHPARLGRFPGG+LDD D+QVITMEKTVYSEEAER
Sbjct: 61  YKLPAGLCRRALRTKHRQNVKKKKGIHPARLGRFPGGILDDADVQVITMEKTVYSEEAER 120

Query: 121 KVVELEKEMWDIFYSTGFWRSPSQRDQISSSN 153
           KVVELEKEMW++FY+TGFWRSPSQRDQISSSN
Sbjct: 121 KVVELEKEMWEVFYNTGFWRSPSQRDQISSSN 152

[Close]

BLAST of CmoCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A0A0LGV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 110/159 (69.18%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 1   MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI 60
           MSNT+MFRP  SN RQ L+ SKS SG+VRFAEVAGGTTAECAAV CCCPC+ +NFL+LAI
Sbjct: 1   MSNTIMFRPPSSNRRQPLLTSKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYSE---- 120
           YKVPAGLCRRALRTK RQ + KKK + PAR GRF  G  D+ DIQ+++  K VYS     
Sbjct: 61  YKVPAGLCRRALRTKRRQRL-KKKGVTPARRGRFSFGGYDETDIQILSAGKLVYSSEPRG 120

Query: 121 ----EAERKVVELEKEMWDIFYSTGFWRSPSQRDQISSS 152
               E ERKV+ELEKEMW+IFYSTGFWRSPS+RDQ S S
Sbjct: 121 QQAVETERKVMELEKEMWEIFYSTGFWRSPSRRDQTSIS 158

[Close]

BLAST of CmoCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A5D3DQ13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004890 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.1e-50
Identity = 108/159 (67.92%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI 60
           MSNT+M RP  SN RQ L+ SKS SG+VRFAEVAGGTTAECAAV CCCPC+ +NFL+LAI
Sbjct: 1   MSNTIMLRPPSSNRRQPLLASKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYS----- 120
           YKVPAGLCRRALRTK RQ +KKK  I PAR GR+  G  D+ DIQ+++  K++YS     
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVI-PARRGRYSYGGYDETDIQILSAGKSLYSSEPRG 120

Query: 121 ---EEAERKVVELEKEMWDIFYSTGFWRSPSQRDQISSS 152
              EE ERKV+ELEKEMW+IFYSTGFWRSPS+R+Q S S
Sbjct: 121 QQAEETERKVMELEKEMWEIFYSTGFWRSPSRRNQTSIS 158

[Close]

BLAST of CmoCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A1S4DUJ2 (uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.1e-46
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 1   MSNTVMFRPTLSNPRQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAI 60
           MSNT+M RP  SN RQ L+ SKS SG+VRFAEVAGGTTAECAAV CCCPC+ +NFL+LAI
Sbjct: 1   MSNTIMLRPPSSNRRQPLLASKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTKHRQSVKKKKAIHPARLGRFPGGVLDDGDIQVITMEKTVYS----- 120
           YKVPAGLCRRALRTK RQ +KKK             G  D+ DIQ+++  K++YS     
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKK------------DGGYDETDIQILSAGKSLYSSEPRG 120

Query: 121 ---EEAERKVVELEKEMWDIFYSTGFWRSPSQRDQISSS 152
              EE ERKV+ELEKEMW+IFYSTGFWRSPS+R+Q S S
Sbjct: 121 QQAEETERKVMELEKEMWEIFYSTGFWRSPSRRNQTSIS 147

[Close]

BLAST of CmoCh14G003790.1 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 74/188 (39.36%), Postives = 98/188 (52.13%), Query Frame = 0


Query: 2   SNTVMFRPTLSNPRQTLI--------PSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAV 61
           S+T    P+ SN RQ L+        P  S  G+   AE  GGTTA CAAV+CCCPC  V
Sbjct: 19  SDTPSSSPSRSNRRQPLLQRSLSSPSPRASCGGSTP-AEFCGGTTASCAAVWCCCPCGLV 78

Query: 62  NFLILAIYKVPAGLCRRALRTKHRQSVKK-----------------------KKAIHPAR 121
           N L+LAIYKVP G+CRRA+R++ R+ + K                       + AIHP  
Sbjct: 79  NLLVLAIYKVPKGICRRAIRSRRRKQLVKNGILPPLPTDGKNERMQRVFQNSEFAIHPLD 138

Query: 122 LGRFPGGVLDDGDIQVITMEKTV--------YSEEAERKVVELEKEMWDIFYSTGFWRSP 151
                    DD  + +  + K+V         ++E +  V+ LEKEMW+ FY  GFWRSP
Sbjct: 139 SDDVSDDEDDDNFLDLKYIGKSVATGFTTEEETDEDDEAVLALEKEMWNRFYGAGFWRSP 198

[Close]

BLAST of CmoCh14G003790.1 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-21
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 15  RQTLIPSKSVSGTVRFAEVAGGTTAECAAVFCCCPCIAVNFLILAIYKVPAGLCRRALRT 74
           R++L       G    AE  GGTTA CAA+  C PC  VN ++LA+YK+P GLCRRA+R 
Sbjct: 8   RRSLSTPSLCGGGSTTAECCGGTTASCAALCLCAPCSVVNLVVLAVYKLPRGLCRRAIRR 67

Query: 75  KHRQSVKKKKAIHPAR-LGRFPGGVLDDGDIQVITMEKTVYSEEAERKVVELEKEMWDIF 134
             R+ + KK+ +   R  GR  GG        + + ++    EE +  V+ LEKEMW  F
Sbjct: 68  IRRKRLAKKEFVESGREFGR--GGSSQFAVHPLESRDEEEEEEEEDEAVIALEKEMWSRF 127

Query: 135 YSTGFWRSPSQRDQISS 151
           YS GFWRS SQ +  SS
Sbjct: 128 YSGGFWRSLSQAETASS 142

[Close]

BLAST of CmoCh14G003790.1 vs. TAIR 10
Match: AT2G27180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-21
Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 29  RFAEVAGGTTAECAAVFCCCPCIAVNFLILAIYKVPAGLCRRA-LRTKHRQSVKKKKAIH 88
           +  EVAGG  AECAAV+CCCPC  VN ++LA+YKVPA +C++A  R+K R+  +K+  + 
Sbjct: 36  KVGEVAGGAAAECAAVWCCCPCAVVNLMVLAVYKVPAAVCKKAWRRSKRRRFTRKRHGLL 95

Query: 89  PARLGRFPGGV----LDDGDIQV-ITMEKTVYSEEAERKVVELEKEMWDIFYSTGFWRSP 148
            +             L++ D+   I  E+   S      VV LE EM D FY  GFWRSP
Sbjct: 96  ASATAEGSESTVHARLNEEDLTAEIVFEECHVSGGELNDVVRLENEMLDRFYGAGFWRSP 155

Query: 149 SQRDQISSS 152
           SQ+D  S S
Sbjct: 156 SQKDTSSGS 164

The following BLAST results are available for this feature:

BLAST of CmoCh14G003790.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G003790.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7R8	4.9e-79	100.00	uncharacterized protein LOC111441632 OS=Cucurbita moschata OX=3662 GN=LOC1114416...	[more]
A0A6J1J6H8	1.2e-74	92.11	uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788...	[more]
A0A0A0LGV0	1.9e-51	69.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1	[more]
A0A5D3DQ13	2.1e-50	67.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DUJ2	7.1e-46	64.15	uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=...	[more]

BLAST of CmoCh14G003790.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11690.1	2.4e-25	39.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G06380.1	1.2e-21	43.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G27180.1	6.0e-21	43.41	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33264:SF8	EXPRESSED PROTEIN	coord: 13..148
None	No IPR available	PANTHER	PTHR33264	EXPRESSED PROTEIN	coord: 13..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G003790	CmoCh14G003790	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G003790.1:exon:4007	CmoCh14G003790.1:exon:4007	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G003790.1:cds	CmoCh14G003790.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G003790.1	CmoCh14G003790.1-protein	polypeptide