CmoCh14G003690.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003690.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-H2 finger protein ATL70-like
Location	Cmo_Chr14: 1709505 .. 1710005 (+)
Sequence length	501
RNA-Seq Expression	CmoCh14G003690.1
Synteny	CmoCh14G003690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGCCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTGCGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA

mRNA sequence

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGCCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTGCGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA

Coding sequence (CDS)

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGCCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTGCGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA

Protein sequence

MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS

Homology

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.6e-42
Identity = 85/157 (54.14%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTV-PQPNRRRRPGER-----RDAIVD 72
           T ++G F Y +G+S+GVL L+TT+T+ +Y CTR  +   P++  +   R        I+D
Sbjct: 58  TDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIID 117

Query: 73  FGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHS 132
             PGL+++ I  YPKILYSE K         AS C+ICLGDYK + +LR LPDC H+FH 
Sbjct: 118 VVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHL 177

Query: 133 GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLAN 164
            CID WLRLNP+CPVCRTSP+PTPLSTPLAEVVPLA+
Sbjct: 178 KCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 79/174 (45.40%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRR-------PG 72
           T  +G   Y +G+S+G+L L+TT+T+ +Y CTR       TT P+  RR+R       PG
Sbjct: 17  TDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPG 76

Query: 73  ERR--------DAIVDFGPGLEDEAINEYPKILYSEKKLEGKL--ESAAASGCSICLGDY 132
           + R        D +V    GL +E I  +PK+ Y E ++   L  ES+  S CSICL DY
Sbjct: 77  QERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADY 136

Query: 133 KNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           K  D++R+LPDC H+FH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 137 KKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-26
Identity = 65/169 (38.46%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 19  FPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIV------------- 78
           F Y + I++G L LL+TV +++Y+C R +  +       G+R  +++             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINEYPKILYSEKKLEGKLESAAASG---CSICLGDYKNEDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIVDFGP-------GLED 80
           Y + I+V +L L++ + +A+Y+C R+         R     D ++D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWL 140
             I  YP+I+  + +   +L       CSICL DY+  + +R +P+C H FH+ C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           R + +CP+CR SP P+ L+TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIVDFG------------ 80
           Y + I++G L L++T+ +++Y+C R +  + +          +  D G            
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  ----------PGLEDEAINEYPKILYSEKKLEGKLE-------SAAASGCSICLGDYKNE 140
                      GL+   IN YPK  ++ K +   +            + CSICL +Y  E
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT-KDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           ++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.0e-90
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 167
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.3e-88
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQ NRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD IVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 167
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 129/166 (77.71%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60

Query: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 167
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEV+PLA GRS
Sbjct: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRS 162

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.0e-66
Identity = 128/166 (77.11%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+ + SGG    G++G+FP+IVGISVG+LFLLTT+TI TYLCTRTTVPQPNRR +   R
Sbjct: 1   MNSPSDSGG----GDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGR 60

Query: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAAA+GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 167
           GH+FH  CIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of CmoCh14G003690.1 vs. ExPASy TrEMBL
Match: A0A7N0V3V8 (RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 93/165 (56.36%), Postives = 120/165 (72.73%), Query Frame = 0


Query: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNN+T SG    +  VG F Y +GIS+G+L L+TT+TIA+Y C RT    P   R P   
Sbjct: 1   MNNTTDSGTFFGSYAVGGFSYGIGISIGILLLITTITIASYFCARTATGSPQGARSPPSA 60

Query: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120
            + ++D   G+++E I  YPK+LYSE + +GK  +  A+ CSICL DYK  D LR+LPDC
Sbjct: 61  HEIVLDV--GIDEETIETYPKLLYSEARRQGKASTTTATCCSICLADYKGPDALRMLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 166
           GH+FH GC+DPWLRL+P+CPVCRTSP+P+PLSTPLAEVVPLA+ R
Sbjct: 121 GHLFHVGCVDPWLRLHPTCPVCRTSPLPSPLSTPLAEVVPLASRR 163

[Close]

BLAST of CmoCh14G003690.1 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 6.1e-43
Identity = 85/157 (54.14%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTV-PQPNRRRRPGER-----RDAIVD 72
           T ++G F Y +G+S+GVL L+TT+T+ +Y CTR  +   P++  +   R        I+D
Sbjct: 58  TDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIID 117

Query: 73  FGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHS 132
             PGL+++ I  YPKILYSE K         AS C+ICLGDYK + +LR LPDC H+FH 
Sbjct: 118 VVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHL 177

Query: 133 GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLAN 164
            CID WLRLNP+CPVCRTSP+PTPLSTPLAEVVPLA+
Sbjct: 178 KCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of CmoCh14G003690.1 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 9.1e-39
Identity = 79/174 (45.40%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 13  TGNVGTFPYIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRR-------PG 72
           T  +G   Y +G+S+G+L L+TT+T+ +Y CTR       TT P+  RR+R       PG
Sbjct: 17  TDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPG 76

Query: 73  ERR--------DAIVDFGPGLEDEAINEYPKILYSEKKLEGKL--ESAAASGCSICLGDY 132
           + R        D +V    GL +E I  +PK+ Y E ++   L  ES+  S CSICL DY
Sbjct: 77  QERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADY 136

Query: 133 KNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           K  D++R+LPDC H+FH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 137 KKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of CmoCh14G003690.1 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 65/169 (38.46%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 19  FPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIV------------- 78
           F Y + I++G L LL+TV +++Y+C R +  +       G+R  +++             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINEYPKILYSEKKLEGKLESAAASG---CSICLGDYKNEDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CmoCh14G003690.1 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIVDFGP-------GLED 80
           Y + I+V +L L++ + +A+Y+C R+         R     D ++D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWL 140
             I  YP+I+  + +   +L       CSICL DY+  + +R +P+C H FH+ C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           R + +CP+CR SP P+ L+TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of CmoCh14G003690.1 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIVDFG------------ 80
           Y + I++G L L++T+ +++Y+C R +  + +          +  D G            
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  ----------PGLEDEAINEYPKILYSEKKLEGKLE-------SAAASGCSICLGDYKNE 140
                      GL+   IN YPK  ++ K +   +            + CSICL +Y  E
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT-KDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           ++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of CmoCh14G003690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	8.6e-42	54.14	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	1.3e-37	45.40	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	1.7e-26	38.46	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	1.7e-21	34.90	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	1.4e-20	33.71	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of CmoCh14G003690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F576	3.0e-90	100.00	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A6J1J186	6.3e-88	97.59	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A0A0LEU3	1.4e-66	77.71	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A5A7TRH5	3.0e-66	77.11	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A7N0V3V8	1.4e-47	56.36	RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of CmoCh14G003690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	6.1e-43	54.14	RING/U-box superfamily protein	[more]
AT5G06490.1	9.1e-39	45.40	RING/U-box superfamily protein	[more]
AT2G46160.1	1.2e-27	38.46	RING/U-box superfamily protein	[more]
AT5G07040.1	1.2e-22	34.90	RING/U-box superfamily protein	[more]
AT3G61550.1	1.0e-21	33.71	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 1.0E-8 score: 45.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..143 e-value: 2.4E-14 score: 53.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 12.917115
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 61..148 e-value: 1.2E-21 score: 78.1
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 9..164
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 9..164
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..143 e-value: 1.01197E-20 score: 78.1125
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 75..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G003690	CmoCh14G003690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G003690.1:exon:4560	CmoCh14G003690.1:exon:4560	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G003690.1:cds	CmoCh14G003690.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G003690.1	CmoCh14G003690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding