CmoCh14G002640.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G002640.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	vam6/Vps39-like protein
Location	Cmo_Chr14: 1191026 .. 1192507 (-)
Sequence length	531
RNA-Seq Expression	CmoCh14G002640.1
Synteny	CmoCh14G002640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTATATGTTCTATGAGTAACCTTTGAATATCGTTGGTATGGAGGTTCCAAAATACACGGTGCGTCTGGGAAGATTCCATATCCAGTCCCTTGGAACATCTATTGGGTTGAGGCTTGACTCGTGATCTGCAAACACCTACAAAGGAAATAATTATAGTTAGTTGTGGCACCAAGCCTCGAATGAAAACATGAAAACATGGTGTAAACAGTATTCAACTTTACCTCATTGACTTGAAAGTAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCATGGTATCTGTTTTTTTCATTTTTTTTTTTTTTTTTGGGNTGTCATTTTCTTTAGATATTTAAGGAATAAACACCTTTTGTCTAACTTTTAGGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTGCTTTGTTGCCAAGATATATTGAGGTATCCTTAATCCACTGTAAACAATTTCAAACACTTCGTCATTGAAATCTTTACATTTTCTTCCGTTCTTTAAACTTGCAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTGGTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGGTGATCCTCAGCCCATTACAAGATTGTGTTAATTATGGGCGGTTGTAGTTTGGGATGTCTGTGTTTATGTTGTCGATTATCAAAAGGGAAATACGTACAAAATTAGATCGTTTTATGATTTGAGTATGATAGTAATAGTTTCAGATATATTGTGCATTATTAAATAGAGATGATTCGGTTTATATGCACCAAAATCTGGATATAGCACAAACATCTTTCTCTGAGGTTTACATGTAAGAAACTGTCTTTTGGGTTGCAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAAGTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGGTGGGTAATCCTACTAAGAAACCTACTGCTGTGGTTTTTATTCTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGATATTGATTAAGATTCGATATGCTAGGTATATTTGAGCATAACCACTTATTTGACTAGACATGTCTCACCAAAAGAGTCCCTCGAACCATGAGAGAGTTGGCTTCTCTGACACTGTTGCACGAGAGGCACTCCTCTTCAAGACACAATTGATGATGTTCTTGATTACTGCATCTCTTTTCTGGTAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA

mRNA sequence

ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCATGGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTGCTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTGGTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAAGTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA

Coding sequence (CDS)

ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCATGGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTGCTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTGGTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAAGTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA

Protein sequence

MPCVDNPGGQEKLFIYNQSHYKRYHSVESFLSLLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEFAVSPK

Homology

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy Swiss-Prot
Match: Q8L5Y0 (Vacuolar sorting protein 39 OS=Arabidopsis thaliana OX=3702 GN=VPS39 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.7e-52
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           L+ G +NIGVFVDQNGKLLQ  RICWSEAP+ +VIQ PYAIALLPR +E+R L SPY LI
Sbjct: 205 LILGKENIGVFVDQNGKLLQTERICWSEAPTSIVIQNPYAIALLPRRVEVRLLRSPYPLI 264

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVL+N R L+ SN+A++VGLDNS Y LFPV +GAQIVQLTASGNFEEALALCK+LPP+
Sbjct: 265 QTIVLQNIRRLVKSNNAVIVGLDNSVYVLFPVSIGAQIVQLTASGNFEEALALCKVLPPD 324

Query: 153 DSSLRSAKESSIHISWMEF 172
           +SSLR+AKESSIH  +  +
Sbjct: 325 ESSLRAAKESSIHTRFAHY 343

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy Swiss-Prot
Match: Q8R5L3 (Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.8e-13
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 36  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTI 95
           G D++ V +++ G   Q+  + W++ P  +  Q PY +A+LPRY+EIR+L  P  L+Q+I
Sbjct: 221 GQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTL-EPRLLVQSI 280

Query: 96  VLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDS 155
            L+  R +    ++ + V  ++  + L PVP+  QI QL     FE AL L ++    DS
Sbjct: 281 ELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDS 340

Query: 156 SLRSAKESSIH 166
                K+  IH
Sbjct: 341 E----KQQQIH 346

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy Swiss-Prot
Match: Q96JC1 (Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.9e-13
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 36  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTI 95
           G D++ V +++ G   Q+  + W++ P  +  Q PY IA+LPRY+EIR+ + P  L+Q+I
Sbjct: 221 GQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRT-FEPRLLVQSI 280

Query: 96  VLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDS 155
            L+  R +    ++ + V  ++  + L PVP+  QI QL     FE AL L ++    DS
Sbjct: 281 ELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDS 340

Query: 156 SLRSAKESSIH 166
                K+  IH
Sbjct: 341 E----KQQQIH 346

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy Swiss-Prot
Match: A4IG72 (Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio OX=7955 GN=tgfbrap1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-08
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL+    +G+F +  G + Q   + WSE      +  PY +AL   ++ + S+     L 
Sbjct: 222 LLAAPGGLGMFANAEG-ISQRAPVSWSENVIAAAVCFPYVVALDEGFVTVHSMLD-QQLK 281

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALAL 146
           QT+  R+G+ L D    +VV    + Y L P+PL  QI  L AS   EEAL L
Sbjct: 282 QTLSFRDGQLLQDFEGKVVVASSKAVYMLVPLPLERQIQDLLASHRVEEALTL 332

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy Swiss-Prot
Match: Q8WUH2 (Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens OX=9606 GN=TGFBRAP1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-08
Identity = 39/115 (33.91%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL+G   +G+F    G + Q   + WSE      +  PY IAL   +I + S+       
Sbjct: 222 LLAGPGGLGMFATVAG-ISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQK- 281

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCK 148
           QT+  + G  L D    ++V      Y L P+PL  QI  L AS   EEAL L K
Sbjct: 282 QTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAK 334

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy TrEMBL
Match: A0A6J1J1I5 (vam6/Vps39-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482579 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.0e-67
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISW 169
           DSSLRSAKESSIHI +
Sbjct: 334 DSSLRSAKESSIHIRY 349

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy TrEMBL
Match: A0A6J1EUB2 (vam6/Vps39-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435988 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.0e-67
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISW 169
           DSSLRSAKESSIHI +
Sbjct: 334 DSSLRSAKESSIHIRY 349

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy TrEMBL
Match: A0A5D3D2H1 (Vam6/Vps39-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.0e-64
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYIEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy TrEMBL
Match: A0A5A7TMM2 (Vam6/Vps39-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00280 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.0e-64
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYIEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640.1 vs. ExPASy TrEMBL
Match: A0A1S3BX35 (vam6/Vps39-like protein OS=Cucumis melo OX=3656 GN=LOC103494389 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.0e-64
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYIEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640.1 vs. TAIR 10
Match: AT4G36630.1 (Vacuolar sorting protein 39 )

HSP 1 Score: 205.3 bits (521), Expect = 4.0e-53
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           L+ G +NIGVFVDQNGKLLQ  RICWSEAP+ +VIQ PYAIALLPR +E+R L SPY LI
Sbjct: 205 LILGKENIGVFVDQNGKLLQTERICWSEAPTSIVIQNPYAIALLPRRVEVRLLRSPYPLI 264

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVL+N R L+ SN+A++VGLDNS Y LFPV +GAQIVQLTASGNFEEALALCK+LPP+
Sbjct: 265 QTIVLQNIRRLVKSNNAVIVGLDNSVYVLFPVSIGAQIVQLTASGNFEEALALCKVLPPD 324

Query: 153 DSSLRSAKESSIHISWMEF 172
           +SSLR+AKESSIH  +  +
Sbjct: 325 ESSLRAAKESSIHTRFAHY 343

The following BLAST results are available for this feature:

BLAST of CmoCh14G002640.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L5Y0	5.7e-52	72.66	Vacuolar sorting protein 39 OS=Arabidopsis thaliana OX=3702 GN=VPS39 PE=1 SV=1	[more]
Q8R5L3	6.8e-13	33.59	Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1	[more]
Q96JC1	8.9e-13	33.59	Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2	[more]
A4IG72	5.0e-08	33.63	Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio r...	[more]
Q8WUH2	8.6e-08	33.91	Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens OX...	[more]

BLAST of CmoCh14G002640.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1I5	5.0e-67	97.06	vam6/Vps39-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482579 PE=4 SV=1	[more]
A0A6J1EUB2	5.0e-67	97.06	vam6/Vps39-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435988 PE=4 SV=1	[more]
A0A5D3D2H1	3.0e-64	92.09	Vam6/Vps39-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TMM2	3.0e-64	92.09	Vam6/Vps39-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BX35	3.0e-64	92.09	vam6/Vps39-like protein OS=Cucumis melo OX=3656 GN=LOC103494389 PE=4 SV=1	[more]

BLAST of CmoCh14G002640.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36630.1	4.0e-53	72.66	Vacuolar sorting protein 39	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001180	Citron homology (CNH) domain	PFAM	PF00780	CNH	coord: 34..105 e-value: 5.0E-10 score: 39.3
None	No IPR available	PANTHER	PTHR12894:SF37	VACUOLAR SORTING PROTEIN 39	coord: 33..171
IPR032914	Vam6/VPS39/TRAP1 family	PANTHER	PTHR12894	CNH DOMAIN CONTAINING	coord: 33..171

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G002640	CmoCh14G002640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G002640.1:exon:4931	CmoCh14G002640.1:exon:4931	exon
CmoCh14G002640.1:exon:4930	CmoCh14G002640.1:exon:4930	exon
CmoCh14G002640.1:exon:4929	CmoCh14G002640.1:exon:4929	exon
CmoCh14G002640.1:exon:4928	CmoCh14G002640.1:exon:4928	exon
CmoCh14G002640.1:exon:4927	CmoCh14G002640.1:exon:4927	exon
CmoCh14G002640.1:exon:4926	CmoCh14G002640.1:exon:4926	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G002640.1:cds	CmoCh14G002640.1:cds_6	CDS
CmoCh14G002640.1:cds	CmoCh14G002640.1:cds_5	CDS
CmoCh14G002640.1:cds	CmoCh14G002640.1:cds_4	CDS
CmoCh14G002640.1:cds	CmoCh14G002640.1:cds_3	CDS
CmoCh14G002640.1:cds	CmoCh14G002640.1:cds_2	CDS
CmoCh14G002640.1:cds	CmoCh14G002640.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G002640.1	CmoCh14G002640.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport