CmoCh13G004110.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004110.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CASP-like protein
Location	Cmo_Chr13: 5164917 .. 5167755 (+)
Sequence length	1012
RNA-Seq Expression	CmoCh13G004110.1
Synteny	CmoCh13G004110.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAAATGGACATCACTATGGATTTCCGAAGACAAATGGGTCCTCCTAGTAGAGACCCATTGAATGCCTACGCAGATTGAGGTCAGACTCCATTAAAGGCAGCCTTTATTTTGCAGCATGAGGTGCGTTCTTCAGTAAAATCACCAACCAGCTTCTACATCTCTGTTTTCGACACCTGTCTAAAAATTGCTTGCTTTGCCAGATCTTCAATACATTTCCCACCACTAGATTTTTGCTAATTTGTAAACTATATTCTTGAATTTTACCCGTCGATGTCACTTATTTAATTGGCGCTGCTGATGAGTGCTTATATGAAGGGTGCCCTCGTGCATGCCCCACAAGTGTTTGATGAAATGTCTGACTGAAAAATTGAGGTTCTTTTTGTTGAATCCTTGCTTCTCTTTTCTGGATTTGGGTCTTGGGGTGGAGAAAATGAGCTATTCTGGCATTGGCATTAGCCCGGGGAATGTTCCTGTGTATCACAGCTCGAATTTGAAGGTTTTTGATAAAAGGGTGAGGGTGGTTGAGCTGGTCTTGAGGTTTTTGATATGTGGCCTTGGAGTTCTTGCTGCTGTACTTGTGGGAACTGATACTGAAGTTAAAGATATCTTTGCTATTCGAAAGAGGGCAAAATTTACAGACATGAAAGCTCTTGTGTAATCTCTTTGTCTCTCTGTCTCTCTCTCTCTCTGTTTTTTTGTTTCTGCTTGGTCGGATTTTGGTCCTACCTATTAACTACTACACTTTTGAGATGATATTGGTTGTGCCCATTTACAGTTACTGGTTCTTTTGTTTCTGTTCTTGGTTTTGTTTTGGTTTTACAAATTAAATTATCACTAGACTGAAAAGCTTTTACTTAAACAAGATTTGAATGATGGGTTGTGATATACATATTCTTATCACTCCTTTCACTTGTAGGCTAAAAATTGGTGCAGAATTCATTATAGAAGTTACCTCACGGCCTCTCTGACGCTATGATATTAATACAGGTTTTTGGTGGTAGCAAATGCTGTAGCTGCAGCTTACTCTTTGGTCCAAGGACTGCGATGTGCGGTGAGCATGGTGAGGGGAAATGTGCTATTCAGCAAGCCTTTGGCTTGGATCATTTTCTCTGGCGATCAGGTACATTTTCGACCTGGGAGATTCTGAGCTTCCTGATCCTTTTTGCCATTTTTACTGAATGAAGTAGATGACCATACGTATGTGTACAAGTTCTTTAGATGTTTGCCTAAGCCCGGTCCTTTTTGGACTTTCTCTTTCCTTTTCGGACTTCCTACTTTTAAAACTTGTCGGTTAGAGGAAGTTTCTACACTCTTATAAAAAATGTTTTGTTTTTTTCTCCAACTGATATGGGATCTTACACACAATCCGACCCATTCGGGGCCCAACGTTATCACTAGCACTCGTTCCCTTCTCCAATAAATGTGGGACCCCCCAATCCACCTCCTTCGTGGCCAGTGTCCTTGCTGGCACATCGCCTCGTGTCCACTCCTTTTTGAGGCTCGACCTCCTTACTAGCACGTCGCTCGATGTCTAGATCTGATACTATTTGTAACGGCCCAAGCCCACTATTAACAGATCTTGTCATCTTTGTATTTTTTTTTTCGAGTTTCTCCTTAAAGTTTTTAAAACGTTTCTACTAAGGTGAGGTTTCCACATCTTTATAAAGAATGTTTCTTCTCTCTTTCTGATGCCGATAATATCTGGTTTTGACCGTGAATGAATCGATTCATGGCTTGGGTTGGTATTGTCTGAGGATTCCATTACCATGGACTAAAGGGATAACCACTTGTTATATGACTGTGAAAACAATAAATGCGCAAGTTCCAAGTGAACTTCGGTTCTACCGACCTCCGTCCAAAAAATTTATGTGGTCTACAATAAATTTCCTTGTGCACTTCAATATCTGCTTATCTTCCTATCTTCCTTTTTGTCCTTGAAATTTTACGTATTGTATTTTCCTTTTGGATAAATCAGAATTCCTTTTTTTACTCCATATCCTTCAAGCTCATAGTCTTAAATTTTGTTTTCCAATGTAATCATTGTCTTAATACCTGGCCCAAATACTTACAACCAACCAATATTGTCGGACCCCACATTCATATTCATATTATACTTTGAGGTCCAGACAAAAAAAAAAAAAGTACATATTCTAAAATATAAAGTATGAAATAGACGGCGATATTTTTAAGTTAAATTATAAGTTTAGTCATAGAATATTTATGTTTATTTCTATTTAATTCTTGAACTCTCACTATAGTCTAAATTTAAAAGTGTATAATAGATTCTTAAACTTTCAGTTTTGTACACGATATATCACCTTATCAACATTTTTTAAGATTTATTAACTTGTCTCCTTTAGAGTTCTATTCAACGTAAAATTCAATTTCATATCTGATAAATCTGTTAATTTGATAAGGTTTCAAATAGTCAAGAAATTTGTTCGACAAAATTGAAAGTTCAAGACTTAAACTTTTTGAAGTTTAATGGTCTACTAGATACAAAATTGAAAATTTACCGATCTATTAGAGATTAGATTTGTAACCATCTAGGATGTTCGAATCTGACGAGTAGAGTTTTGTGCAGATCATGGCATACCTGACAGTGGCAGCAGTGGCATCGGCAGCCCAGTCAGCGGTGTTCGGGAAGCTGGGACAGCCGGAGTTGCAGTGGATGAAGACATGCAATCTGTACAAGAAGTTCTGCAACCAAGTTGGGGAGGGACTTGCAAGCGCGGTGGTGGTCAGCCTGAGCATGGTGGCGCTTTCTTGCATTTCAGCTTTCAGTCTCTTCCGCCTTTACAACGGTGGGAAGAGCAAGAACAGATCAGGATGGTAG

mRNA sequence

GGGGAAATGGACATCACTATGGATTTCCGAAGACAAATGGGTCCTCCTAGTAGAGACCCATTGAATGCCTACGCAGATTGAGGTCAGACTCCATTAAAGGCAGCCTTTATTTTGCAGCATGAGGTGCGTTCTTCAGTAAAATCACCAACCAGCTTCTACATCTCTGTTTTCGACACCTGTCTAAAAATTGCTTGCTTTGCCAGATCTTCAATACATTTCCCACCACTAGATTTTTGCTAATTTGTAAACTATATTCTTGAATTTTACCCGTCGATGTCACTTATTTAATTGGCGCTGCTGATGAGTGCTTATATGAAGGGTGCCCTCGTGCATGCCCCACAAGTGTTTGATGAAATGTCTGACTGAAAAATTGAGGTTCTTTTTGTTGAATCCTTGCTTCTCTTTTCTGGATTTGGGTCTTGGGGTGGAGAAAATGAGCTATTCTGGCATTGGCATTAGCCCGGGGAATGTTCCTGTGTATCACAGCTCGAATTTGAAGGTTTTTGATAAAAGGGTGAGGGTGGTTGAGCTGGTCTTGAGGTTTTTGATATGTGGCCTTGGAGTTCTTGCTGCTGTACTTGTGGGAACTGATACTGAAGTTAAAGATATCTTTGCTATTCGAAAGAGGGCAAAATTTACAGACATGAAAGCTCTTGTTTTTGGTGGTAGCAAATGCTGTAGCTGCAGCTTACTCTTTGGTCCAAGGACTGCGATGTGCGGTGAGCATGGTGAGGGGAAATGTGCTATTCAGCAAGCCTTTGGCTTGGATCATTTTCTCTGGCGATCAGTGGCATCGGCAGCCCAGTCAGCGGTGTTCGGGAAGCTGGGACAGCCGGAGTTGCAGTGGATGAAGACATGCAATCTGTACAAGAAGTTCTGCAACCAAGTTGGGGAGGGACTTGCAAGCGCGGTGGTGGTCAGCCTGAGCATGGTGGCGCTTTCTTGCATTTCAGCTTTCAGTCTCTTCCGCCTTTACAACGGTGGGAAGAGCAAGAACAGATCAGGATGGTAG

Coding sequence (CDS)

ATGCCCCACAAGTGTTTGATGAAATGTCTGACTGAAAAATTGAGGTTCTTTTTGTTGAATCCTTGCTTCTCTTTTCTGGATTTGGGTCTTGGGGTGGAGAAAATGAGCTATTCTGGCATTGGCATTAGCCCGGGGAATGTTCCTGTGTATCACAGCTCGAATTTGAAGGTTTTTGATAAAAGGGTGAGGGTGGTTGAGCTGGTCTTGAGGTTTTTGATATGTGGCCTTGGAGTTCTTGCTGCTGTACTTGTGGGAACTGATACTGAAGTTAAAGATATCTTTGCTATTCGAAAGAGGGCAAAATTTACAGACATGAAAGCTCTTGTTTTTGGTGGTAGCAAATGCTGTAGCTGCAGCTTACTCTTTGGTCCAAGGACTGCGATGTGCGGTGAGCATGGTGAGGGGAAATGTGCTATTCAGCAAGCCTTTGGCTTGGATCATTTTCTCTGGCGATCAGTGGCATCGGCAGCCCAGTCAGCGGTGTTCGGGAAGCTGGGACAGCCGGAGTTGCAGTGGATGAAGACATGCAATCTGTACAAGAAGTTCTGCAACCAAGTTGGGGAGGGACTTGCAAGCGCGGTGGTGGTCAGCCTGAGCATGGTGGCGCTTTCTTGCATTTCAGCTTTCAGTCTCTTCCGCCTTTACAACGGTGGGAAGAGCAAGAACAGATCAGGATGGTAG

Protein sequence

MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVFGGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAFGLDHFLWRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW

Homology

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BLAST of CmoCh13G004110.1 vs. ExPASy Swiss-Prot
Match: B9SA89 (CASP-like protein 2B1 OS=Ricinus communis OX=3988 GN=RCOM_0864260 PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-60
Identity = 125/202 (61.88%), Postives = 149/202 (73.76%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY G+G+SPGNVPVYH SNLKV DKRVR+ ELVLR LICGLGVLAAVLVGTDT+VK+IF
Sbjct: 1   MSYLGVGVSPGNVPVYHGSNLKVIDKRVRLAELVLRCLICGLGVLAAVLVGTDTQVKEIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAFG------- 154
           +I+K+A+FTDMKALVF         + SLL G R  +    G    +   A+        
Sbjct: 61  SIQKKARFTDMKALVFLVIANGIAAAYSLLQGVRCVVGMVRGSALFSKPLAWAIFSGDQM 120

Query: 155 LDHFLWRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           + +    +VA+AAQSAVF KLGQPELQWMK CN+Y KFCNQVGEG+ASA++VS+SMV LS
Sbjct: 121 MAYLTVAAVAAAAQSAVFAKLGQPELQWMKICNMYGKFCNQVGEGIASALLVSVSMVVLS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISAFSLFRLY   K K+ + W
Sbjct: 181 CISAFSLFRLYGANKGKDCTRW 202

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BLAST of CmoCh13G004110.1 vs. ExPASy Swiss-Prot
Match: B9HD38 (CASP-like protein 2B2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_818956 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-56
Identity = 119/202 (58.91%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY G+G+SPGNVPVYH  NLKV D+RVR+ ELVLR +IC LGVLAAVLVGTDT+VK+IF
Sbjct: 1   MSYLGVGVSPGNVPVYHGMNLKVIDRRVRLAELVLRCVICALGVLAAVLVGTDTQVKEIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
           +I+K+A+FTDMKALVF         + SL+ G R  +    G     K      F  D  
Sbjct: 61  SIQKKARFTDMKALVFLVVANGIAAAYSLVQGVRCVVGMVKGSVLFSKPLAWVIFSGDQM 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VA+A QSA F KLGQP+LQWMK CN+Y KFCNQVGEG+ASA++VS+SMV LS
Sbjct: 121 MAYLTLSAVAAAVQSASFAKLGQPDLQWMKICNMYGKFCNQVGEGIASALLVSVSMVVLS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CIS+FSLFRLY G K K+ + W
Sbjct: 181 CISSFSLFRLYGGNKGKDGARW 202

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BLAST of CmoCh13G004110.1 vs. ExPASy Swiss-Prot
Match: A7R385 (CASP-like protein 2B1 OS=Vitis vinifera OX=29760 GN=GSVIVT00013502001 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.3e-56
Identity = 119/202 (58.91%), Postives = 143/202 (70.79%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY G+G+SPGNVPVYH +NLKV D+RVR+ ELVLR +ICGLG+LAAVLVGTDT+VK IF
Sbjct: 1   MSYLGVGVSPGNVPVYHGTNLKVVDRRVRLAELVLRCVICGLGILAAVLVGTDTQVKVIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAFG------- 154
            I+K+AKFTDMKALVF         + SL+ G R  +    G    +   A+        
Sbjct: 61  TIQKKAKFTDMKALVFLVIANGIAAAYSLIQGLRCVVSMVRGSVLFSKPLAWAIFSGDQV 120

Query: 155 LDHFLWRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           + +    +VA+AAQS+VFG+ GQPELQWMK CN+Y KFCNQVGEG+ SAV VSLSMV LS
Sbjct: 121 IAYLTLAAVAAAAQSSVFGEFGQPELQWMKICNMYGKFCNQVGEGIVSAVGVSLSMVILS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
            ISAFSLFRLY G K  +   W
Sbjct: 181 GISAFSLFRLYGGNKGTSGGRW 202

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BLAST of CmoCh13G004110.1 vs. ExPASy Swiss-Prot
Match: B9IH36 (CASP-like protein 2B1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_575900 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-55
Identity = 118/202 (58.42%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY G+G+SPGNVPVYH +N KV D+RVR+ ELVLR +IC LGVLAAVLVGTDT+VK+IF
Sbjct: 1   MSYLGVGVSPGNVPVYHGTNSKVIDRRVRLAELVLRCVICCLGVLAAVLVGTDTQVKEIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
           +I+K+A+FTDMKALVF         + S + G R  +    G     K      F  D  
Sbjct: 61  SIQKKARFTDMKALVFLVAANGIAAAYSFVQGVRCVVGMVKGSVLFSKPLAWVIFSGDQM 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VA+AAQS+VF KLGQP+LQWMK C +Y KFCNQVGEG+ASA++VS+SMV LS
Sbjct: 121 MAYLTMSAVAAAAQSSVFAKLGQPDLQWMKICTMYGKFCNQVGEGIASALLVSVSMVVLS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISAFSLFRLY G K K+ + W
Sbjct: 181 CISAFSLFRLYGGNKGKDGARW 202

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BLAST of CmoCh13G004110.1 vs. ExPASy Swiss-Prot
Match: D7LIK3 (CASP-like protein 2B2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_482547 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-44
Identity = 101/208 (48.56%), Postives = 133/208 (63.94%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY G+G+SPGNV    S+ +K+ D++VRV EL+LR L+C   ++AA+LV TD +V++IF
Sbjct: 1   MSYLGVGVSPGNV-TGSSTKMKLIDRKVRVTELILRSLVCAFALVAAILVATDVQVREIF 60

Query: 95  AIRKRAKFTDMKALVF-------------GGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQ 154
            I+K+AKFTDMKALVF               + CC   L+ G  + +  E      A   
Sbjct: 61  TIQKKAKFTDMKALVFLVVINGIAAGYSLVQAVCCLVGLMKG--SVLLSE----PLAWAI 120

Query: 155 AFG---LDHFLWRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSL 214
            FG   + +     VA+AAQSA F KLGQPELQWMK C++Y KFCNQVGEG+ASA+   +
Sbjct: 121 FFGDQAVAYLCVAGVAAAAQSAAFAKLGQPELQWMKICDMYGKFCNQVGEGIASALFACI 180

Query: 215 SMVALSCISAFSLFRLYNGGKSKNRSGW 227
            MV +SCISAF +FRLY G K +  S W
Sbjct: 181 GMVLISCISAFGVFRLYGGSKPRQSSRW 201

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BLAST of CmoCh13G004110.1 vs. ExPASy TrEMBL
Match: A0A6J1EJT3 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433968 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.2e-95
Identity = 193/236 (81.78%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK 60
           MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK
Sbjct: 1   MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK 60

Query: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF---GGSKCCS 120
           RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF     +   +
Sbjct: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVFLVVANAVAAA 120

Query: 121 CSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHFL----WRSVASAAQSAVFGKLGQPEL 180
            SL+ G R A+    G     K      F  D  +      +VASAAQSAVFGKLGQPEL
Sbjct: 121 YSLVQGLRCAVSMVRGNVLFSKPLAWIIFSGDQIMAYLTVAAVASAAQSAVFGKLGQPEL 180

Query: 181 QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW 227
           QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW
Sbjct: 181 QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW 236

[Close]

BLAST of CmoCh13G004110.1 vs. ExPASy TrEMBL
Match: A0A5D3E6D4 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00650 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74
Identity = 151/195 (77.44%), Postives = 157/195 (80.51%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY+GIGISPGNVPVYH SNLKVFDKRVRVVELVLRF+ICGLGVLAAVLVGTDTE     
Sbjct: 1   MSYAGIGISPGNVPVYHGSNLKVFDKRVRVVELVLRFVICGLGVLAAVLVGTDTE----- 60

Query: 95  AIRKRAKFTDMKALVFGGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAFGLDHFLWRS-- 154
                         VF GSKCCS  LLFG R  MCG H EGK A+QQAF LDHFLWRS  
Sbjct: 61  --------------VFSGSKCCSSGLLFGARITMCGVHAEGKSALQQAFSLDHFLWRSVA 120

Query: 155 -VASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSL 214
            VASAAQSAVFGKLGQPELQWMK C+LYKKFCNQVGEGLASAVVVSLSMV LSCISA SL
Sbjct: 121 AVASAAQSAVFGKLGQPELQWMKICDLYKKFCNQVGEGLASAVVVSLSMVVLSCISASSL 176

Query: 215 FRLYNGGKSKNRSGW 227
           FRLYNGGK+K+ S W
Sbjct: 181 FRLYNGGKNKSNSRW 176

[Close]

BLAST of CmoCh13G004110.1 vs. ExPASy TrEMBL
Match: A0A6J1KQB5 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495527 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 4.3e-71
Identity = 153/202 (75.74%), Postives = 163/202 (80.69%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSYSGIGISPGNVPVYHSSNLKVFDKRVRV+ELVLRFLICGLGVLA+VLVGTDTEVKDIF
Sbjct: 1   MSYSGIGISPGNVPVYHSSNLKVFDKRVRVIELVLRFLICGLGVLASVLVGTDTEVKDIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
           AIRK+AKFTDMKALVF     +   + S + G R A+    G     K      F  D  
Sbjct: 61  AIRKKAKFTDMKALVFLVVANAVAAAYSFVQGLRCAVSMVRGNVLFSKPLAWIIFSGDQI 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLA AVVVSLSMVALS
Sbjct: 121 MAYLTVAAVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLACAVVVSLSMVALS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISAFSLFRLYNGGKSK+RSGW
Sbjct: 181 CISAFSLFRLYNGGKSKSRSGW 202

[Close]

BLAST of CmoCh13G004110.1 vs. ExPASy TrEMBL
Match: A0A1S3CJM8 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103501714 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 8.3e-67
Identity = 146/202 (72.28%), Postives = 159/202 (78.71%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY+GIGISPGNVPVYH SNLKVFDKRVRVVELVLRF+ICGLGVLAAVLVGTDTEV+ IF
Sbjct: 1   MSYAGIGISPGNVPVYHGSNLKVFDKRVRVVELVLRFVICGLGVLAAVLVGTDTEVRTIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
           AIRKRAKFTDMKALVF     +   + SL+ G R  +C   G+    K      F  D  
Sbjct: 61  AIRKRAKFTDMKALVFLVVANAVAAAYSLVQGLRCVVCMLRGKVLFSKPLAWIIFSGDQI 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VASAAQSAVFGKLGQPELQWMK C+LYKKFCNQVGEGLASAVVVSLSMV LS
Sbjct: 121 MAYVTVAAVASAAQSAVFGKLGQPELQWMKICDLYKKFCNQVGEGLASAVVVSLSMVVLS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISA SLFRLYNGGK+K+ S W
Sbjct: 181 CISASSLFRLYNGGKNKSNSRW 202

[Close]

BLAST of CmoCh13G004110.1 vs. ExPASy TrEMBL
Match: A0A0A0LT24 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G181430 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.9e-66
Identity = 146/202 (72.28%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY+GIGISPGNVPVYH SNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVK IF
Sbjct: 1   MSYAGIGISPGNVPVYHGSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKTIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
            IRKRA FTDMKALVF     +   + SL+ G R  +C   G+    K      F  D  
Sbjct: 61  TIRKRATFTDMKALVFLVVANAVAAAYSLVQGLRCVVCMVRGKVLFSKPLAWIIFSGDQI 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VASAAQSAVFGKLGQPELQWMK C+LYKKFCNQVGEGLASAVVVSLSMV LS
Sbjct: 121 MAYVTVAAVASAAQSAVFGKLGQPELQWMKICDLYKKFCNQVGEGLASAVVVSLSMVVLS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISA SLFRLYNGGK+K+ S W
Sbjct: 181 CISASSLFRLYNGGKNKSNSRW 202

[Close]

BLAST of CmoCh13G004110.1 vs. NCBI nr
Match: XP_022927008.1 (CASP-like protein 2B1 [Cucurbita moschata])

HSP 1 Score: 357.5 bits (916), Expect = 8.8e-95
Identity = 193/236 (81.78%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK 60
           MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK
Sbjct: 1   MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK 60

Query: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF---GGSKCCS 120
           RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF     +   +
Sbjct: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVFLVVANAVAAA 120

Query: 121 CSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHFL----WRSVASAAQSAVFGKLGQPEL 180
            SL+ G R A+    G     K      F  D  +      +VASAAQSAVFGKLGQPEL
Sbjct: 121 YSLVQGLRCAVSMVRGNVLFSKPLAWIIFSGDQIMAYLTVAAVASAAQSAVFGKLGQPEL 180

Query: 181 QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW 227
           QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW
Sbjct: 181 QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW 236

[Close]

BLAST of CmoCh13G004110.1 vs. NCBI nr
Match: KAG6583742.1 (CASP-like protein 2B1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 193/236 (81.78%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK 60
           MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK
Sbjct: 1   MPHKCLMKCLTEKLRFFLLNPCFSFLDLGLGVEKMSYSGIGISPGNVPVYHSSNLKVFDK 60

Query: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF---GGSKCCS 120
           RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF     +   +
Sbjct: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVFLVVANAVTAA 120

Query: 121 CSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHFL----WRSVASAAQSAVFGKLGQPEL 180
            SL+ G R A+    G     K      F  D  +      +VASAAQSAVFGKLGQPEL
Sbjct: 121 YSLVQGLRCAVSMVRGNVLFSKPLAWIIFSGDQIMAYLTVAAVASAAQSAVFGKLGQPEL 180

Query: 181 QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW 227
           QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW
Sbjct: 181 QWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRSGW 236

[Close]

BLAST of CmoCh13G004110.1 vs. NCBI nr
Match: KAA0035678.1 (CASP-like protein 2B1 [Cucumis melo var. makuwa] >TYK30865.1 CASP-like protein 2B1 [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 2.2e-74
Identity = 151/195 (77.44%), Postives = 157/195 (80.51%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY+GIGISPGNVPVYH SNLKVFDKRVRVVELVLRF+ICGLGVLAAVLVGTDTE     
Sbjct: 1   MSYAGIGISPGNVPVYHGSNLKVFDKRVRVVELVLRFVICGLGVLAAVLVGTDTE----- 60

Query: 95  AIRKRAKFTDMKALVFGGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAFGLDHFLWRS-- 154
                         VF GSKCCS  LLFG R  MCG H EGK A+QQAF LDHFLWRS  
Sbjct: 61  --------------VFSGSKCCSSGLLFGARITMCGVHAEGKSALQQAFSLDHFLWRSVA 120

Query: 155 -VASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSL 214
            VASAAQSAVFGKLGQPELQWMK C+LYKKFCNQVGEGLASAVVVSLSMV LSCISA SL
Sbjct: 121 AVASAAQSAVFGKLGQPELQWMKICDLYKKFCNQVGEGLASAVVVSLSMVVLSCISASSL 176

Query: 215 FRLYNGGKSKNRSGW 227
           FRLYNGGK+K+ S W
Sbjct: 181 FRLYNGGKNKSNSRW 176

[Close]

BLAST of CmoCh13G004110.1 vs. NCBI nr
Match: XP_023520382.1 (CASP-like protein 2B1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 3.2e-73
Identity = 159/202 (78.71%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF
Sbjct: 1   MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
           AIRKRAKFTDMKALVF     +   + SL+ G R A+    G     K      F  D  
Sbjct: 61  AIRKRAKFTDMKALVFLVVANAVAAAYSLVQGLRCAVSMVRGNVLFSKPLAWIIFSGDQI 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS
Sbjct: 121 MAYLTVAAVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISAFSLFRLYNGGKSKNRSGW
Sbjct: 181 CISAFSLFRLYNGGKSKNRSGW 202

[Close]

BLAST of CmoCh13G004110.1 vs. NCBI nr
Match: KAG7019382.1 (CASP-like protein 2B1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-73
Identity = 159/202 (78.71%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF
Sbjct: 1   MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGE---GKCAIQQAFGLDHF 154
           AIRKRAKFTDMKALVF     +   + SL+ G R A+    G     K      F  D  
Sbjct: 61  AIRKRAKFTDMKALVFLVVANAVTAAYSLVQGLRCAVSMVRGNVLFSKPLAWIIFSGDQI 120

Query: 155 L----WRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
           +      +VASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS
Sbjct: 121 MAYLTVAAVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISAFSLFRLYNGGKSKNRSGW
Sbjct: 181 CISAFSLFRLYNGGKSKNRSGW 202

[Close]

BLAST of CmoCh13G004110.1 vs. TAIR 10
Match: AT2G35760.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-44
Identity = 97/202 (48.02%), Postives = 131/202 (64.85%), Query Frame = 0


Query: 35  MSYSGIGISPGNVPVYHSSNLKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIF 94
           MSY G+G+SPGNV    ++ +K+ D++VRV EL+LR L+C L ++AA+L+ TD +V++IF
Sbjct: 1   MSYLGVGVSPGNVS-GSTTKMKLIDRKVRVTELILRCLVCVLALVAAILIATDVQVREIF 60

Query: 95  AIRKRAKFTDMKALVF---GGSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAFGL------ 154
            I+K+AKFTDMKALV            SL+   R  +    G    +   A+ +      
Sbjct: 61  MIQKKAKFTDMKALVLLVVVNGIAAGYSLVQAVRCVVGLMKGRVLFSKPLAWAIFFGDQA 120

Query: 155 -DHFLWRSVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALS 214
             +     VA+AAQSA F KLG+PELQWMK CN+Y KFCNQVGEG+ASA+   + MV +S
Sbjct: 121 VAYLCVAGVAAAAQSAAFAKLGEPELQWMKICNMYGKFCNQVGEGIASALFACIGMVLIS 180

Query: 215 CISAFSLFRLYNGGKSKNRSGW 227
           CISAF +FRLY G KS+  S W
Sbjct: 181 CISAFGVFRLYGGSKSRPSSRW 201

[Close]

BLAST of CmoCh13G004110.1 vs. TAIR 10
Match: AT4G16442.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 128.3 bits (321), Expect = 8.0e-30
Identity = 74/182 (40.66%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 55  LKVFDKRVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKALVF---G 114
           +K+ D+R+R+ EL+LR  I    +LA +LV TDTEVK IF I+K AK+TDMKA+VF    
Sbjct: 1   MKLIDRRMRLTELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVA 60

Query: 115 GSKCCSCSLLFGPRTAMCGEHGEGKCAIQQAF-------GLDHFLWRSVASAAQSAVFGK 174
                  SLL   R  +    G+   +   A+        + +    ++A+ A+S V  +
Sbjct: 61  NGIAAVYSLLQSVRCVVGTMKGKVLFSKPLAWAFFSGDQAMAYLNVAAIAATAESGVIAR 120

Query: 175 LGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYNGGKSKNRS 227
            G+ +LQWM+ C +Y KFCNQ+  G++SA++ S++MV +SCISAFSLFRLY   K +  +
Sbjct: 121 EGEEDLQWMRVCTMYGKFCNQMAIGVSSALLASIAMVFVSCISAFSLFRLYGATKDRRTT 180

[Close]

BLAST of CmoCh13G004110.1 vs. TAIR 10
Match: AT4G25830.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-11
Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 0


Query: 61  RVRVVELVLRFLICGLGVLAAVLVGTDTEVKDIFAIRKRAKFTDMKAL---VFGGSKCCS 120
           ++R  E++LR  I    +L + L+G D++ K+I  I K   F  + AL   ++      +
Sbjct: 3   KLRETEVILRLCIVFFLLLTSCLIGLDSQTKEIAYIHKNVSFRYLLALEAELYIDVVVAA 62

Query: 121 CSLLFGPRTAMCGEHGEGKCAIQQAFG--LD----HFLWRSVASAAQSAVFGKLGQPELQ 180
            +L+   +  +   + E K +  + F   LD    + ++   ++AAQ ++    G  ELQ
Sbjct: 63  YNLV---QLGLGWYNVEQKTSNPKWFSYLLDQTAAYVVFAGTSAAAQHSLLVVTGSRELQ 122

Query: 181 WMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFSLFRLYN 217
           WMK C  + +FC Q+G  +    + +  MV LS ISAF+LFRLY+
Sbjct: 123 WMKWCYKFTRFCFQMGSAIILNYIAAALMVLLSSISAFNLFRLYS 164

[Close]

BLAST of CmoCh13G004110.1 vs. TAIR 10
Match: AT3G06390.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 42.0 bits (97), Expect = 7.6e-04
Identity = 21/59 (35.59%), Postives = 30/59 (50.85%), Query Frame = 0


Query: 152 SVASAAQSAVFGKLGQPELQWMKTCNLYKKFCNQVGEGLASAVVVSLSMVALSCISAFS 211
           +  +A   A     G  E+ W K CN+Y KFC  +   LA ++  SL ++ LS  SA S
Sbjct: 138 ATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRYIATSLALSLFASLLLLVLSIWSALS 196

The following BLAST results are available for this feature:

BLAST of CmoCh13G004110.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SA89	4.3e-60	61.88	CASP-like protein 2B1 OS=Ricinus communis OX=3988 GN=RCOM_0864260 PE=2 SV=1	[more]
B9HD38	2.2e-56	58.91	CASP-like protein 2B2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_818956 PE=3 S...	[more]
A7R385	8.3e-56	58.91	CASP-like protein 2B1 OS=Vitis vinifera OX=29760 GN=GSVIVT00013502001 PE=2 SV=1	[more]
B9IH36	1.1e-55	58.42	CASP-like protein 2B1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_575900 PE=2 S...	[more]
D7LIK3	1.9e-44	48.56	CASP-like protein 2B2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT...	[more]

BLAST of CmoCh13G004110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJT3	4.2e-95	81.78	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433968 PE=3 SV=1	[more]
A0A5D3E6D4	1.1e-74	77.44	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00...	[more]
A0A6J1KQB5	4.3e-71	75.74	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495527 PE=3 SV=1	[more]
A0A1S3CJM8	8.3e-67	72.28	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103501714 PE=3 SV=1	[more]
A0A0A0LT24	1.9e-66	72.28	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G181430 PE=3 SV=1	[more]

BLAST of CmoCh13G004110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927008.1	8.8e-95	81.78	CASP-like protein 2B1 [Cucurbita moschata]	[more]
KAG6583742.1	1.1e-94	81.78	CASP-like protein 2B1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0035678.1	2.2e-74	77.44	CASP-like protein 2B1 [Cucumis melo var. makuwa] >TYK30865.1 CASP-like protein 2...	[more]
XP_023520382.1	3.2e-73	78.71	CASP-like protein 2B1 [Cucurbita pepo subsp. pepo]	[more]
KAG7019382.1	4.2e-73	78.71	CASP-like protein 2B1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh13G004110.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35760.1	1.2e-44	48.02	Uncharacterised protein family (UPF0497)	[more]
AT4G16442.1	8.0e-30	40.66	Uncharacterised protein family (UPF0497)	[more]
AT4G25830.1	2.9e-11	30.30	Uncharacterised protein family (UPF0497)	[more]
AT3G06390.1	7.6e-04	35.59	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 60..196 e-value: 2.0E-18 score: 66.6
IPR006459	Casparian strip membrane protein	TIGRFAM	TIGR01569	TIGR01569	coord: 67..210 e-value: 7.3E-23 score: 79.1
None	No IPR available	PANTHER	PTHR11615:SF100	CASP-LIKE PROTEIN 2B2	coord: 35..224
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 35..224

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G004110	CmoCh13G004110	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004110.1:exon:8101	CmoCh13G004110.1:exon:8101	exon
CmoCh13G004110.1:exon:8102	CmoCh13G004110.1:exon:8102	exon
CmoCh13G004110.1:exon:8103	CmoCh13G004110.1:exon:8103	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004110.1:five_prime_utr	CmoCh13G004110.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004110.1:cds	CmoCh13G004110.1:cds	CDS
CmoCh13G004110.1:cds	CmoCh13G004110.1:cds_2	CDS
CmoCh13G004110.1:cds	CmoCh13G004110.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004110.1	CmoCh13G004110.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding