CmoCh13G003930.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G003930.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Location	Cmo_Chr13: 4958178 .. 4958918 (+)
Sequence length	741
RNA-Seq Expression	CmoCh13G003930.1
Synteny	CmoCh13G003930.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATAGGGTTGAAGCCATAAACATGGATTCATATGAAAGTTTGGATCTTGATAGAACATCATCAACAAACAATAATGTTGAGAGGTTGAAAAGGATGGTGAAGTTCATAGTGTCAATTTGTGTGTTTTCTTTGGTTTTGGCATTGTTTTTTTCCTTCTTCTCTCTCTTCCCTCATTCATTTACTGTCTATTTCTCCACTTTCCTCTTCTCTCTCCTCAACCATGGCATGGAGAGAAAGTTCATGTTCTTGATCTGTAATGGAATCCTGTTTCTTCTTGCCACTTCCTCTGTTCTTCAAGATTCTTCTCCTTCATCTTCTTCTTCTTCTTCTTCCTCCTCTTTTGGGTATTCTTCATTTTCCCATTCTGTTCATCATGATCAATTTGAACATGATCTTGTGGCTGATGCCTCTGATGGGTATGATTCTGATGAGTCAGAAGAACAAGAACATGAAGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGAACAAGAAGAAGATGAAGAAGATGAAGGGTGTTTTACAGAGGAGGTTGAAGAAGAAGAGGAGGAAGAAGGAAAAAGGAGGGATTTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATAGAAGAGTTTATAAGGAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCAGCAGCTCATTGCAGTGTAA

mRNA sequence

ATGGAGAATAGGGTTGAAGCCATAAACATGGATTCATATGAAAGTTTGGATCTTGATAGAACATCATCAACAAACAATAATGTTGAGAGGTTGAAAAGGATGGTGAAGTTCATAGTGTCAATTTGTGTGTTTTCTTTGGTTTTGGCATTGTTTTTTTCCTTCTTCTCTCTCTTCCCTCATTCATTTACTGTCTATTTCTCCACTTTCCTCTTCTCTCTCCTCAACCATGGCATGGAGAGAAAGTTCATGTTCTTGATCTGTAATGGAATCCTGTTTCTTCTTGCCACTTCCTCTGTTCTTCAAGATTCTTCTCCTTCATCTTCTTCTTCTTCTTCTTCCTCCTCTTTTGGGTATTCTTCATTTTCCCATTCTGTTCATCATGATCAATTTGAACATGATCTTGTGGCTGATGCCTCTGATGGGTATGATTCTGATGAGTCAGAAGAACAAGAACATGAAGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGAACAAGAAGAAGATGAAGAAGATGAAGGGTGTTTTACAGAGGAGGTTGAAGAAGAAGAGGAGGAAGAAGGAAAAAGGAGGGATTTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATAGAAGAGTTTATAAGGAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCAGCAGCTCATTGCAGTGTAA

Coding sequence (CDS)

ATGGAGAATAGGGTTGAAGCCATAAACATGGATTCATATGAAAGTTTGGATCTTGATAGAACATCATCAACAAACAATAATGTTGAGAGGTTGAAAAGGATGGTGAAGTTCATAGTGTCAATTTGTGTGTTTTCTTTGGTTTTGGCATTGTTTTTTTCCTTCTTCTCTCTCTTCCCTCATTCATTTACTGTCTATTTCTCCACTTTCCTCTTCTCTCTCCTCAACCATGGCATGGAGAGAAAGTTCATGTTCTTGATCTGTAATGGAATCCTGTTTCTTCTTGCCACTTCCTCTGTTCTTCAAGATTCTTCTCCTTCATCTTCTTCTTCTTCTTCTTCCTCCTCTTTTGGGTATTCTTCATTTTCCCATTCTGTTCATCATGATCAATTTGAACATGATCTTGTGGCTGATGCCTCTGATGGGTATGATTCTGATGAGTCAGAAGAACAAGAACATGAAGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGATGAACATGAAGAACAAGAAGAAGATGAAGAAGATGAAGGGTGTTTTACAGAGGAGGTTGAAGAAGAAGAGGAGGAAGAAGGAAAAAGGAGGGATTTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATAGAAGAGTTTATAAGGAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCAGCAGCTCATTGCAGTGTAA

Protein sequence

MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSSFSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHEEQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTQQLIAV

Homology

[Close]

BLAST of CmoCh13G003930.1 vs. ExPASy TrEMBL
Match: A0A6J1EH25 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434039 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60
           MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH
Sbjct: 1   MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60

Query: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS 120
           SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS
Sbjct: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS 120

Query: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE 180
           FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE
Sbjct: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE 180

Query: 181 EQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT 240
           EQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT
Sbjct: 181 EQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT 240

Query: 241 QQLIAV 247
           QQLIAV
Sbjct: 241 QQLIAV 246

[Close]

BLAST of CmoCh13G003930.1 vs. ExPASy TrEMBL
Match: A0A6J1CN51 (nardilysin-like OS=Momordica charantia OX=3673 GN=LOC111012652 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.9e-26
Identity = 129/253 (50.99%), Postives = 156/253 (61.66%), Query Frame = 0


Query: 1   MENRVEAINMDSYESLDLDRTSSTN--NNVERLKRMVKFIVSICVFSLVLALFFSFFSLF 60
           ME   +A ++DS ESL+LD    TN  + V+RLK MVKF+VS+CVF LV+ALF S FSLF
Sbjct: 1   MEEHPQAKDLDSSESLNLDGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLF 60

Query: 61  PHSFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGY 120
           PHSFT+YFS  LFSLLNH ++R +MFL+CNGIL LLATS +                   
Sbjct: 61  PHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL------------------- 120

Query: 121 SSFSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHED-EHED 180
              S+S+ H  +                  E   EE E+E ED+ +D       D     
Sbjct: 121 -QHSNSIPHHHY------------------ELREEEKEEEVEDDDDDTSAIHSADLAAVG 180

Query: 181 EHEEQEEDEEDEGCFTEEV-EEEEEEEGKR-RDLEVVVSTEELNKKIEEFIRKMKEEMRI 240
                 E+E+DEGCFT+EV EEEEEEEGKR  +LEVVVSTEELNKKIEEFIRKMKEEMRI
Sbjct: 181 PTSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRI 213

Query: 241 EAAQT--QQLIAV 247
           +AA     QL+AV
Sbjct: 241 QAAAAAQTQLVAV 213

[Close]

BLAST of CmoCh13G003930.1 vs. ExPASy TrEMBL
Match: A0A0A0LVQ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 114/227 (50.22%), Postives = 144/227 (63.44%), Query Frame = 0


Query: 7   AINMDSYESLDLDRTSSTN--NNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTV 66
           ++N+++Y+ +    +SS N  + VE LKRMVK    + VF L+L LFFS FSLFPHSF+V
Sbjct: 9   SLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVK----LTVFCLLLGLFFSLFSLFPHSFSV 68

Query: 67  YFSTFLFSLLNHGMERKFMFLICN-GILFLLATSSVLQDSSPSSSSSSSSSSFG-YSSFS 126
           YFSTFLFS+L H +ERK+MFLICN GILFLLATSSV        SSSSSSSSFG Y  F 
Sbjct: 69  YFSTFLFSILTHAVERKYMFLICNIGILFLLATSSV--------SSSSSSSSFGNYCPFP 128

Query: 127 HS---VHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEH 186
           HS    HH+ FEHD+VA  +   +SD    QE EE ++E     E               
Sbjct: 129 HSRHNHHHNLFEHDVVAAVATDEESDSDHTQEEEEEKEEGICRGE--------------- 188

Query: 187 EEQEEDEEDEGCFTEEVEEEEEE--EGKRRDLEVVVSTEELNKKIEE 225
             +EE EEDEGCFT+EVEEEEEE  EGK+R  +  +     +++IE+
Sbjct: 189 LLEEELEEDEGCFTDEVEEEEEEEKEGKKRRKKERIRDSGEHRRIEQ 208

[Close]

BLAST of CmoCh13G003930.1 vs. ExPASy TrEMBL
Match: A0A6P3ZZX9 (glutamic acid-rich protein-like OS=Ziziphus jujuba OX=326968 GN=LOC107415360 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 102/237 (43.04%), Postives = 137/237 (57.81%), Query Frame = 0


Query: 25  NNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTVYFSTFLFSLLNHGMERKFMF 84
           N+N++ L+R ++  +S+ + SL L  + S  SLFPHSF+VYFST LFS+    +ERK+MF
Sbjct: 22  NSNLQFLRRTLQVAISVSLLSLFLC-YSSGISLFPHSFSVYFSTCLFSIFTRSLERKYMF 81

Query: 85  LICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSSFSHSVHHDQFEHDLVADASDGYDS 144
           L+CNGIL  LA SSV        SS+SSS+  G             E +L  D     + 
Sbjct: 82  LVCNGILAFLAKSSV--------SSTSSSTFVG-------------ESELTVDRVPASNI 141

Query: 145 DESEEQEHEEHEDEHEDEHEDEH-----------EDEHEDEHEDEHEEQEEDEEDEGCFT 204
              EE+E EE EDE EDE E++             D H++   +  + + E  E+EG ++
Sbjct: 142 SAFEEEEEEEDEDEDEDEDEEQELEYQGNESLYASDNHDEVKTEALKVEHEGNEEEGSWS 201

Query: 205 ---EEVEEEEEEEGKRRDLE-VVVSTEELNKKIEEFIRKMKEEMRIEAAQTQQLIAV 247
              ++  EE+E EG     E VV ST+ELNKK EEFIRKMKEE+RIEA   QQLIAV
Sbjct: 202 LSMKQENEEDEMEGIETGNEGVVASTDELNKKFEEFIRKMKEEIRIEA--QQQLIAV 234

[Close]

BLAST of CmoCh13G003930.1 vs. ExPASy TrEMBL
Match: A0A061GIF6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-08
Identity = 107/256 (41.80%), Postives = 143/256 (55.86%), Query Frame = 0


Query: 10  MDSY-ESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTVYFST 69
           MD Y + + L       +    LKR ++ +VS+ + S  L     FF +FPHSF+VYFST
Sbjct: 1   MDEYKQKMKLQAVGKLYHRDHFLKRTLQLVVSVALLSFFLCHSSGFF-VFPHSFSVYFST 60

Query: 70  FLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSSFSHSVHHD 129
           FLFS   H +ERK+MFLICNGIL  LA SSV   SSPS S   +  S   ++ + +    
Sbjct: 61  FLFSFFTHTLERKYMFLICNGILAFLAKSSVPSSSSPSESDLGAQLSTSSTNLTQT---- 120

Query: 130 QFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEH----------EDEHEDE 189
              +++V   SD  D+D     E EE ED +E+E E++ E ++          ED+ E E
Sbjct: 121 ---NEVVPRYSDDGDNDVPLVAEREEAEDAYENEVEEQGEQDNIEPLGRVEGKEDDEERE 180

Query: 190 HE-----EQEEDEEDEGCFTEEVEEEEEEEGKRRDL---EVVVSTEELNKKIEEFIRKMK 247
            E     E  E +E E     + E++ +EEG    L   E V STE+LN+K EEFIRKMK
Sbjct: 181 SEVSVIVEDGEYKEGESGLVMQ-EDQHKEEGAGAPLAANEDVPSTEDLNQKFEEFIRKMK 240

[Close]

BLAST of CmoCh13G003930.1 vs. NCBI nr
Match: XP_022927104.1 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 4.0e-109
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60
           MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH
Sbjct: 1   MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60

Query: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS 120
           SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS
Sbjct: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS 120

Query: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE 180
           FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE
Sbjct: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE 180

Query: 181 EQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT 240
           EQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT
Sbjct: 181 EQEEDEEDEGCFTEEVEEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQT 240

Query: 241 QQLIAV 247
           QQLIAV
Sbjct: 241 QQLIAV 246

[Close]

BLAST of CmoCh13G003930.1 vs. NCBI nr
Match: KAG7019366.1 (hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 2.8e-94
Identity = 225/251 (89.64%), Postives = 227/251 (90.44%), Query Frame = 0


Query: 1   MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60
           ME RVEAINMDSYESLDLDRTSST+NNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH
Sbjct: 1   MEKRVEAINMDSYESLDLDRTSSTSNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60

Query: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS 120
           SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQD+SP SSSSSSSSSFGY S
Sbjct: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDASP-SSSSSSSSSFGYCS 120

Query: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE 180
           FSHSVHHDQFEHDLVADASDGYDSDESEEQ               EHEDEHEDEHEDEHE
Sbjct: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQ---------------EHEDEHEDEHEDEHE 180

Query: 181 EQEEDEEDEGCFTEEV-----EEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMRI 240
           EQEEDEEDEGCFTEEV     EEEEEEEG RRDLEVVVSTEELNKKIEEFIRKMKEEMRI
Sbjct: 181 EQEEDEEDEGCFTEEVEEEEEEEEEEEEGNRRDLEVVVSTEELNKKIEEFIRKMKEEMRI 235

Query: 241 EAAQTQQLIAV 247
           EAAQTQQLIAV
Sbjct: 241 EAAQTQQLIAV 235

[Close]

BLAST of CmoCh13G003930.1 vs. NCBI nr
Match: KAG6583719.1 (hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.7 bits (901), Expect = 5.2e-93
Identity = 222/252 (88.10%), Postives = 225/252 (89.29%), Query Frame = 0


Query: 1   MENRVEAINMDSYESLDLDRTSSTNNNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPH 60
           ME RVE INMDSYESLDLDRTSST+NNVERLKRMVKFIVSICVFSLVLALFFSFFS+FPH
Sbjct: 1   MEKRVEDINMDSYESLDLDRTSSTSNNVERLKRMVKFIVSICVFSLVLALFFSFFSVFPH 60

Query: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSS 120
           SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQD+SP SSSSSSSSSFGY S
Sbjct: 61  SFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDASP-SSSSSSSSSFGYCS 120

Query: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHE 180
           FSHSVHHDQFEHDLVADASDGYDSDESEEQEHE                EHEDEHEDEHE
Sbjct: 121 FSHSVHHDQFEHDLVADASDGYDSDESEEQEHE----------------EHEDEHEDEHE 180

Query: 181 EQEEDEEDEGCFTEEV------EEEEEEEGKRRDLEVVVSTEELNKKIEEFIRKMKEEMR 240
           EQEEDEEDEGCFTEEV      EEEEEEEG RRDLEVVVSTEELNKKIEEFIRKMKEEMR
Sbjct: 181 EQEEDEEDEGCFTEEVEEEEEEEEEEEEEGNRRDLEVVVSTEELNKKIEEFIRKMKEEMR 235

Query: 241 IEAAQTQQLIAV 247
           IEAAQTQQLIAV
Sbjct: 241 IEAAQTQQLIAV 235

[Close]

BLAST of CmoCh13G003930.1 vs. NCBI nr
Match: XP_038877796.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-51
Identity = 175/260 (67.31%), Postives = 192/260 (73.85%), Query Frame = 0


Query: 1   MENRVEAINMDSYESLDL------DRTSSTNNN----VERLKRMVKFIVSICVFSLVLAL 60
           ME   EA N+DS +SL+L       RTSS + N    VE L RMVKF     VFSLVLAL
Sbjct: 1   MEEYPEARNLDSNQSLNLYDDDDDIRTSSKDYNCCSKVEMLIRMVKF----TVFSLVLAL 60

Query: 61  FFSFFSLFPHSFTVYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSS 120
           FFSFFSLFPHSF+VYFSTF+FSLLNH MERK+MFLICNGILFLLATSSV++D      SS
Sbjct: 61  FFSFFSLFPHSFSVYFSTFMFSLLNHAMERKYMFLICNGILFLLATSSVIED------SS 120

Query: 121 SSSSSFGYSSF-SHS--VHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEH 180
           SSSSSFG  SF SHS   HH Q EHDLVA A DG DS+ES +Q  EE E+E E+ H DE 
Sbjct: 121 SSSSSFGTCSFNSHSDHHHHHQLEHDLVA-AIDGSDSEESVQQNQEEEEEEEEEIHRDEL 180

Query: 181 EDEHEDEHEDEHEEQEEDEEDEGCFTEEVE-EEEEEEGKRRDLEVVVSTEELNKKIEEFI 240
           E              EE EEDEGCFT+EVE ++EEEEGKRR+LEVVVSTEELNKKIEEFI
Sbjct: 181 E--------------EEMEEDEGCFTDEVEDDDEEEEGKRRELEVVVSTEELNKKIEEFI 234

Query: 241 RKMKEEMRIEAAQTQQLIAV 247
           RKMKEEMRIEAAQT QLIAV
Sbjct: 241 RKMKEEMRIEAAQT-QLIAV 234

[Close]

BLAST of CmoCh13G003930.1 vs. NCBI nr
Match: XP_031736046.1 (uncharacterized protein LOC105434473 [Cucumis sativus] >KAE8652832.1 hypothetical protein Csa_022756 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-38
Identity = 148/253 (58.50%), Postives = 173/253 (68.38%), Query Frame = 0


Query: 7   AINMDSYESLDLDRTSSTN--NNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTV 66
           ++N+++Y+ +    +SS N  + VE LKRMVK    + VF L+L LFFS FSLFPHSF+V
Sbjct: 9   SLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVK----LTVFCLLLGLFFSLFSLFPHSFSV 68

Query: 67  YFSTFLFSLLNHGMERKFMFLICN-GILFLLATSSVLQDSSPSSSSSSSSSSFG-YSSFS 126
           YFSTFLFS+L H +ERK+MFLICN GILFLLATSSV        SSSSSSSSFG Y  F 
Sbjct: 69  YFSTFLFSILTHAVERKYMFLICNIGILFLLATSSV--------SSSSSSSSFGNYCPFP 128

Query: 127 HS---VHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEH 186
           HS    HH+ FEHD+VA  +   +SD    QE EE ++E     E               
Sbjct: 129 HSRHNHHHNLFEHDVVAAVATDEESDSDHTQEEEEEKEEGICRGE--------------- 188

Query: 187 EEQEEDEEDEGCFTEEVEEEEEE------EGKRRDLEVVVSTEELNKKIEEFIRKMKEEM 246
             +EE EEDEGCFT+EVEEEEEE      EGKRR+LE+VVSTEELNKKIEEFIRKMKEEM
Sbjct: 189 LLEEELEEDEGCFTDEVEEEEEEEEEDQKEGKRRELEIVVSTEELNKKIEEFIRKMKEEM 233

The following BLAST results are available for this feature:

BLAST of CmoCh13G003930.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G003930.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EH25	1.9e-109	100.00	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cuc...	[more]
A0A6J1CN51	5.9e-26	50.99	nardilysin-like OS=Momordica charantia OX=3673 GN=LOC111012652 PE=4 SV=1	[more]
A0A0A0LVQ2	1.5e-21	50.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1	[more]
A0A6P3ZZX9	6.0e-10	43.04	glutamic acid-rich protein-like OS=Ziziphus jujuba OX=326968 GN=LOC107415360 PE=...	[more]
A0A061GIF6	7.3e-08	41.80	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1	[more]

BLAST of CmoCh13G003930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927104.1	4.0e-109	100.00	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucur...	[more]
KAG7019366.1	2.8e-94	89.64	hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583719.1	5.2e-93	88.10	hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038877796.1	2.9e-51	67.31	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_031736046.1	4.8e-38	58.50	uncharacterized protein LOC105434473 [Cucumis sativus] >KAE8652832.1 hypothetica...	[more]

BLAST of CmoCh13G003930.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 215..235
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	COILS	Coil	Coil	coord: 168..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..210
None	No IPR available	PANTHER	PTHR34947:SF4	PROTEIN, PUTATIVE-RELATED	coord: 22..244
None	No IPR available	PANTHER	PTHR34947	TRANSMEMBRANE PROTEIN	coord: 22..244

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G003930	CmoCh13G003930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G003930.1:exon:8060	CmoCh13G003930.1:exon:8060	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G003930.1:cds	CmoCh13G003930.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G003930.1	CmoCh13G003930.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane