CmoCh12G010440.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G010440.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPalmitoyltransferase
LocationCmo_Chr12: 9700042 .. 9701116 (-)
Sequence length288
RNA-Seq ExpressionCmoCh12G010440.1
SyntenyCmoCh12G010440.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTGGTAAATGGTTGCAGAAATAACACGTGGAGGTATGTTATTGGGTGTCTATAAAGAAAGTGTGTAGTGGTGATGTAGTGGATTCCAGCTCTGAATTTTCTATATTTGAATTTGTAATTTCTTTTCGATGGAATTATCCAGAGGACAAAATAAAATGCCGTTTTGAATAAAGTTATTTTTGGAAGTGGCTTGTTTAATTAATTTCAAAGAGAGAGATAAATGGCTATTTTTTCTCTTATTTTATATATTTTAATTTTTTTTTTTTACTAATTTTGCTAGTAGTAGTAACCGTCTCCATCTAAGTTCACTTCTAACAGCAGATATAGTCTGTATTGGCCCATTATATATAATGTTCGCTCGTAGCTTAAAAATTTACACTCTTGCAAAGAATGCTTAGTTCGTCTCTCCAACCAACGTCCAACGTTCTCACTCGCACACCACCTGATGGTTGTATTTGAGAAGATTTCTACACTTGCAAATAATGTTTATCCAACCAATGTGGGTGTCCAATGTTCTCGCTGGGACACCACTCGATGTCTGTTTTTTATACCATTAGTAACCACTCAAGCCCATTGCTGTCTGTTTTTTATACCATTAGTAACCACTCAAGCCCATTGCTGGTAGATATTGCCCACTTTTGCTCTTTACGTATCGCCCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATATGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATATGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGACGATTATGTTAAAAATTCTACTATGAATAATGTGATTCTAGCCAAGTAATCGCAGGTTCATTGAATAG

mRNA sequence

ATGACCTGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATATGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATATGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGCCAAGTAATCGCAGGTTCATTGAATAG

Coding sequence (CDS)

ATGACCTGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATATGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATATGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGGTGAGATTTGTCCCACTTAGCGTATCGCTGAGTGAGCGGCCAAGTAATCGCAGGTTCATTGAATAG

Protein sequence

MTCVSLSERVRFVPLSVSLSERVRYVPLSVSLSERVRYVPLSVSLSERVRFVPLSVSLSERVRFVPLSVSLSERVRFVPLSVSLSERPSNRRFIE
Homology
[Close]
BLAST of CmoCh12G010440.1 vs. ExPASy TrEMBL
Match: A0A7R9EK43 (Hypothetical protein OS=Timema monikensis OX=170555 GN=TMSB3V08_LOCUS12156 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 0 

Query: 4   VSLSERVRFVPLSVSLSERVRYVPLSVSLSERVRYVPLSVSLSERVRFVPLSVSLSERVR 63
           V LS  V ++P  + LS  V Y+P  V LS  V Y+P  V LS  V ++P  V LS  V 
Sbjct: 173 VLLSTHVLYIPEKMLLSTHVLYIPEKVLLSTHVLYIPEKVLLSTHVLYIPEKVLLSTHVL 232

Query: 64  FVPLSVSLSERVRFVPLSVSLS 86
           ++P  V LS  V ++P  V LS
Sbjct: 233 YMPEKVLLSTHVLYIPEKVLLS 254

[Close]
BLAST of CmoCh12G010440.1 vs. ExPASy TrEMBL
Match: A0A673IUV8 (Palmitoyltransferase OS=Sinocyclocheilus rhinocerous OX=307959 GN=LOC107741370 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 8   ERVRFVPLSVSLSERVRYVPLSVSLSERVRYVPLSVSLSERVRFVPLSVSLSERVRFVPL 67
           +R    P+SVS +ER +  P+S+  +ER +  P+S   +ER +  P+S+SL ER +  P+
Sbjct: 370 DRDESAPVSVSSNERDKSTPVSLGSNERKKSAPVSFGSNERDKSAPVSLSLDERDKSAPV 429

Query: 68  SVSLSERVRFVPLSVSLSER 88
           S+S +ER +  P+S+  +ER
Sbjct: 430 SLSWNEREKSAPVSLGWNER 449

The following BLAST results are available for this feature:
BLAST of CmoCh12G010440.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G010440.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7R9EK433.2e-0441.46Hypothetical protein OS=Timema monikensis OX=170555 GN=TMSB3V08_LOCUS12156 PE=4 ... [more]
A0A673IUV83.2e-0437.50Palmitoyltransferase OS=Sinocyclocheilus rhinocerous OX=307959 GN=LOC107741370 P... [more]
BLAST of CmoCh12G010440.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh12G010440CmoCh12G010440gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G010440.1:exon:2869CmoCh12G010440.1:exon:2869exon
CmoCh12G010440.1:exon:2868CmoCh12G010440.1:exon:2868exon
CmoCh12G010440.1:exon:2867CmoCh12G010440.1:exon:2867exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G010440.1:cdsCmoCh12G010440.1:cds_3CDS
CmoCh12G010440.1:cdsCmoCh12G010440.1:cds_2CDS
CmoCh12G010440.1:cdsCmoCh12G010440.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh12G010440.1CmoCh12G010440.1-proteinpolypeptide