CmoCh12G008230.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G008230.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2B
Location	Cmo_Chr12: 7419649 .. 7420074 (+)
Sequence length	426
RNA-Seq Expression	CmoCh12G008230.1
Synteny	CmoCh12G008230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTCCGCCTTGTTCTTCCTGGCGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCTGTTACTAAGTTTACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTCCGCCTTGTTCTTCCTGGCGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCTGTTACTAAGTTTACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTCCGCCTTGTTCTTCCTGGCGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCTGTTACTAAGTTTACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 8.6e-59
Identity = 133/147 (90.48%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKK--AEKAPAEKKPRAEKKLPKDG----ADKKKKKAKKSVETY 60
           MAPKAEKKPAEKKPAEEKK  AEKAPAEKKP+A KKLPK+G     DKKKK+ KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 142
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy Swiss-Prot
Match: O65821 (Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-58
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD-GADKKKKKAKKSVETYKIYIF 60
           MAPKA KKPAEKKP EEKKAE+ PAEKKP+A KKLPKD GADKKKKK+KKSVETYKIYIF
Sbjct: 1   MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSN 142

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.3e-58
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 224.2 bits (570), Expect = 9.5e-58
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 221.9 bits (564), Expect = 4.7e-57
Identity = 132/150 (88.00%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAP+AEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy TrEMBL
Match: A0A6J1FBJ0 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111443930 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.6e-63
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy TrEMBL
Match: A0A6J1I2W4 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111468523 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.6e-63
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy TrEMBL
Match: A0A6J1I068 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111468524 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.6e-61
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKA+KAPAEKKPRAEKKLPKDGAD KKKKAKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKDGAD-KKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 140

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy TrEMBL
Match: A0A6J1I594 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469341 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKP-AEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIF 60
           MAPKAEKKPAEKKP AEEKKAEKAPAEKKPRAEKKLPKD +DKKKKKAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CmoCh12G008230.1 vs. ExPASy TrEMBL
Match: A0A6J1I3M0 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469340 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKP-AEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIF 60
           MAPKAEKKPAEKKP AEEKKAEKAPAEKKPRAEKKLPKD ADKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAADKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CmoCh12G008230.1 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-59
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmoCh12G008230.1 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 224.2 bits (570), Expect = 6.7e-59
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230.1 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 221.9 bits (564), Expect = 3.3e-58
Identity = 132/150 (88.00%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAP+AEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230.1 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-57
Identity = 130/151 (86.09%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPA------EEKKAEKAPAEKKPRAEKKLPKD----GADKKKKKAKKS 60
           MAPKA KKPAEKKPA      EEK AEKAPAEKKP+A KKLPK+    G +KKKK+ KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CmoCh12G008230.1 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 218.0 bits (554), Expect = 4.8e-57
Identity = 129/148 (87.16%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPA------EEKKAEKAPAEKKPRAEKKL-PKDGADKKKKKAKKSVET 60
           MAP+AEKKPAEKK A      E K AEKAPAEKKP+A KKL PK+  DKKKK++KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of CmoCh12G008230.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	8.6e-59	90.48	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
O65821	1.5e-58	91.55	Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4	[more]
Q9LZT0	3.3e-58	91.72	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]
P40283	9.5e-58	88.67	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
O23629	4.7e-57	88.00	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]

BLAST of CmoCh12G008230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBJ0	4.6e-63	100.00	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111443930 PE=3 SV=1	[more]
A0A6J1I2W4	4.6e-63	100.00	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111468523 PE=3 SV=1	[more]
A0A6J1I068	5.6e-61	98.58	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111468524 PE=3 SV=1	[more]
A0A6J1I594	1.6e-60	97.18	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469341 PE=3 SV=1	[more]
A0A6J1I3M0	1.6e-60	97.18	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469340 PE=3 SV=1	[more]

BLAST of CmoCh12G008230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46030.1	2.3e-59	91.72	Histone superfamily protein	[more]
AT5G59910.1	6.7e-59	88.67	Histone superfamily protein	[more]
AT3G45980.1	3.3e-58	88.00	Histone superfamily protein	[more]
AT2G28720.1	2.8e-57	86.09	Histone superfamily protein	[more]
AT1G07790.1	4.8e-57	87.16	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 73..93 score: 75.74 coord: 112..125 score: 92.45 coord: 54..72 score: 80.55 coord: 125..138 score: 92.65 coord: 95..112 score: 76.51
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 44..140 e-value: 8.0E-73 score: 257.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..141
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 109..131
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..141 e-value: 1.2E-58 score: 198.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..141
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..117 e-value: 9.7E-23 score: 81.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR23428:SF278	HISTONE H2B	coord: 5..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh12G008230	CmoCh12G008230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G008230.1:exon:3787	CmoCh12G008230.1:exon:3787	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G008230.1:cds	CmoCh12G008230.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh12G008230.1	CmoCh12G008230.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity