CmoCh12G001030.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G001030.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Cmo_Chr12: 558943 .. 565069 (-)
Sequence length	729
RNA-Seq Expression	CmoCh12G001030.1
Synteny	CmoCh12G001030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGATTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCAACGTGATCTCTAGGGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAATTTTTTTTGGCTCTACTGATGTTATAGTCTCGCTCTTTTCTGCTAGGCGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGTCCGATGTTTATTTATGGGCTGTGTACGTTTTCAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAAAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGTTTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGGATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAGGTACCCAATTGTACTTTATCTTAGTTTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGAGCATTTATGCTTAGCGAGGATAAGTTTTTGGTGAAGTTTGTGATGCAGTATCTTTCTGAGGATCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAAACGCTTGGAGTGCAATTCAGGTAATTCGTCTCTTCTGTAAAAACTGTGCACTTCACTTGTGAGAAGATTGTAGGTTTGTGTGTAAAACTTATGAAATTTCACATATCTTAGAACTGTTATTCACTGACAGTAAGACCCGTGAAGAAGGTTATAGCATTTAGATCTTTTAGGAATGTTCCCACTTGCACGAGACTGCCTGCCAAGAATCAAGTAACTAATATGATGCTTAATTTTAAGAAATGATATACTTAAAACTATCCCCATAACATCAAATGTTCCAATAAGAATCAACTACAATTGAGTTCATACTGTAATTAATCGACTTTTGGTGGGTCATTGGAGCTTCTGGTAGATTACCCTGTCCTATTCTATTAGCATGTTTACAGTACGAGATCCAATAACCTACCAAAAATCATGGAACTATAAAGCTTTTGTAAATGAAAAAATGTGAGATCCCACCTCGATTGGAGAGAGGAATGAGTGTCAGCGAGGATGCTGGGCCCCGAAGGAGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAACCATTCTTTATAAGCGTTTGAAAACCTCTCCCTAGCAGACGCATTTTAAAAACCTTGAGGGGAAGCTCAAGAGGGAAAGCCGATGACAATATCTGCTAGCGGGGGTTTGGTCTGATACAAAAAAACCTCGAGGAAATTGTAACATCTCGATGCTTTAGTTTAGGAGATGTGCTATCCCCCTTCTCTTTTTGTGGTTGCTGCTCTGATTGATCCAGTAGGCTGCTCATTTATGGTCAACATGCTTGTGATATTGGGAAAAATTCTTTAGTTGGAAGTGCACATTAAAGGTGAACCATATCTAGTATGAAACTATCTGGTTTGTAGAGGTGAAGACTTCGCAGAAGATAGTTTAGATCTTTGAGGCTTAAAAGTTCAAACTAAACTTTCTAAATGGTAAATGTCGGGAGTAAATTGGTGTAGAAGGACTTTTGAGACACAGACTCAAGTCTGGATTTTGTAATGGATCTTTTCCAATCAAATACCTTGGCCATTGAGATGGAACCCCATAGGTTAATCAAAATAAAGTGGAGTATGAAAGGATAGAGATAGAGAGGAAGTGGGATTTGAGCTATGAGAGGAATCTTGAAGGAAAATACTTTCCATATACAACATTTAAAGGTGTCTAGGTACTACACATCTCCCTATCAGCCACAAGTTCTTCCAAGAGTTAGAAGTGAAGGCCTTGTCCTCTAAATAGAGAAATTCTTGAGGAAAAAAGAAGTGGTTTCCTAACCAAAATGGTTAAACTGAATTCAAATAGAAGAATGAATAAGATCCTGTTCTTTCCTTGATATCTAATTCCTTCCAAAACCTGACTGGAGACTATGAAAATCTATATAAGGGCAAGCCAGAAGATGGGGAATCCCCATTTGATTCGGAATAGTAGTCTGTTGGTTAACTTTAATCCAAGATGGAGTTATATTTGTGAAAAGCTTTCTGATGATGACTTCATTGGAAGACAGGACACTTCGTACGTGTAGTCCACTTGACCTTTTGGGTGGGGTTTTCCCCTTCCTCACTCACTAGGCTGTCTTTTTTTTCGTTCTTTTGTTAATATACAGTGTGAAAAGCAAAATGGAGATCTTAACTTCCTCTTTAATTCTGTCCTCTGTTGTGGATCCGTTGGTCTACACGCTAAAGGATTGAGTTGGTGCCAACTTAGTTTGGTCTTCTCTTACTCTGCGAACGACCTCCAGTTACTCTCTTTTAAGAGTAGGATAAAGTTCTTTGGAGGATCATTGTAACAGTTCAAGCCCACCGCTAATAGATATTGTCTTCTTTGGGTTTTCTCTTAAAGTTTTTAAAATGCGTCTGCTAGGGATAGGTTTCTACACCCGTATAAAGGAGGATTCGTTCCTCTCTCCAACCGATGTAGGATCTCACAATCCACTCTCCCTTTGGGGTTCACTGTCCTCGTTGACACACGTTCCTCCAATTGACGTGGGATCTCACAATTATGGTGAAGACTGAATACTATGAGTTAGGAATTATAGGTTCGGAAGGAGTAGGACAACTTTCGTGGGGGAGGCAGGATAGTTTAAAATCAAAGAAATCTCTATTCTTCACACCCCACCATTTTTCTTCCAGATTCTCGTAATGCGACCCAAAACTTTAGGTTAGCATTTTTCTTCTTTCTCAGTGGTCTAAGATGTTATTCATCCAAGAACATGAACTTCCTGTTAGCAATGATATTGTAAATGGGAACATTCTTGGTGACTACGTTCAAGTTGCTTCCAAGTTTAGAGCTGATTCAGGGGTTGAATGTTTCCATACTGCCATGAATGAACGTTGTAAATGTGTAAATGCATTATCAATCCTTTTCTGTTACTTCTGCTGCAGTTTGATTATCGTTTTGAATTCAACACAACATATATTAGTTTGGTTCGACTTCGCACATATCGTTCTCACATTTGCGTTCTCGGTCATGAATATATTCTTTTTTCAGGAGGAAAACAGGCAAAATTTTGGAAAGTCCAGGTTTTATGGACATCAATTTCTGGCAGGATGGTCTTTGAAGAGAGATTTGAGATTCTTATAGGGTTTTGTTGTGTATTTTACCCAATTTTGAGATGCAGAGATGAATGTATTGTATTGGACATGTAACTATTCAAATTTTCCATTTTGTCTTATTTAGTTAAAATTTTATTTTTATTTCTATAAATGACAAGATATTAGGTTATGCATCTATCCTTGCCGAAAAAGGTGCAATTTTCAGGAAGTTATTACGTTAATTGAAAATGTAACTATTCAAGTTTAATCGAATAAAAATAAAAGAAATAATTAAATGTGATATCCTGGAAATGGAGAGAAAACTAGTTTTCTGCGAGACTTTTATTACTTAATAGAAACATTCCTATTTCTTTTTCTTATCTTAAAACCCTAGAATGCTTTATTGGGAAAGGCCTAATCTAAAACCCATACCTATCAAATGTCTTGTGATTATTTTTATATTTTTATGCCCAACCTTTTACCTTGATAACAATTTTCTCTCCAAACTTTCCTCCGGAACATTGAGGTTGCTTTTCAGAGGAAGAATTGAGTGGAAGTAAGGTATTGATGTTGGGATCATTGTGTCAAAGAAGGTTAACCGTCGGAAATCGGTGTTGAGGACGTTATGGGATCGTCGGCGCGTCACCGGAATTCGGGTAAGGGAGGCAAGGTTTTTGGAATTAGGTTGAGCCGTAGACGCACACCCAACAGCTCCGGCAGCTTCGCATGCACAGTGCGGCCAGCTCGCATGTGTACGAAATCGGCTCGGTTTCGTCAATTCCCGCGGCTCGGCTTGGCGGCTTAGTTTGTCAGCTCGGTAGCTCGGCTTGGTGGCTCGATATCACTATAATATATCGATTCCATGGTTTTCGACCCTTTCGAAGCCGTTTCTGCCCTTAGTTTTACCATCCGAGGTCAGTATGGTTCATAAACGATAAAGACAGATTAGGTCGGGAGTTTATTTTGATAAATAGTATGAGATTTAGCTAGGGTATGTTATGAAAGGCTCCTAAGTTTTGATGTGATTATTATAGGACGTATTTAACGGTTGGGATTAGCTTGTTGTGAGTGACTTCAACCAAGGCCATCGAGGTAAGTGACCTTACTGTTGGAGTTAGTTTACTACGTGTTGTATGATGGTGCGTGCCCTGTGACCCCTGCATGCACCATGTTTTATTATGTGATTTGACTAAATGATGTATGAATTATGTGGCTGTTTATGCTATGAAACGTAATGAGTTATGTTGACTGTTGACTGTCTATGTTATGTGAAGTTATGAATAATATGTTAGTAATATATGCCATGAAAATGTTGATTGATGTCATGGATACACGTTGTACTATCGAGTCATGTCATGAGATGTTTATGCAAATGAGATTTACTTTCATGTTATGTAATATGTCATGTAATGTAAGTCATGTGAGATGCCATGTGATGTAAGAAACGTAAATGCGATTGTTAGCACGGCTTATGTAATGCCATGTTAGATATGTTAAGGGATCTCATGCATATATGTATGTCACGTGCATCGAGATTCTTCCTCTTTACGTTACAAAAAAATGAAATACGATATTTATGTTCGCCATGATATCATGCGGGCCCTTTTCTGTTCTGTGGTGTCCGCCAACGTGTAACACGTTGTGCCCGACCAAGTCAGGCCCAGGGGGTATGTTTACGAGCTTGGGTCCATGTACACGTACATGGGCCACGTGTAACATGTTGTGTTCGACCAAGTCATGCCCAGGGGGTATGTTTACGAGCCTGGGTCCATGTACACGTACATGGGCCGTGTGTGAAGGAGTACCACACACCCAACCCTACCCAGAATAGAAAAGCGCCCAAGGCTATGTAAAGTTTATGAAAAGTTAGGTCCCGCTCATATGTTGCATGTGTTTGCATTCTTAATCCCAATAGTGGGGTGACTGAGTATTTCATAAAATACTCAAGCCATGCGCCCAAGGCTATGTGTTTGCATTTCTAATCCCAATAGTGGGATGACTCAAACCCTTCGGGTAAAATAAGAACAACCCCACATTCAAACCGCCCCTTTTCCCATTTGCAAGAACTTGTTTCACTTGCATATCCTAAGGAATTCAAACAATGGCTTCAAATACAGTATCAGGAAGTATCGTATCTCTGGTAGCACTGGTGCCCGTCACATGCTTCAAAGTGCAAAAGGGCAGAGGGAATTGAAACAAGAAGAAGATTGGAATTCGATCCGTGAAATCTTCAAGACCTCTTCTCACTAGCTATAGCTCTTGCGCGCTTCCCGAATCGATCTAGACGAGACTCGAGATGGATAGATATGTCCGACCAAAAAAAAGAAAGTTCTTTATAGATGAGTTGGAGTCGATTCACTAAAATAAAAAAAAAAAAAAAATAGTATTTTAACCAAATTTTTGTTCATTTTAATGTAAAATTTTATGATATATTAGTTATAA

mRNA sequence

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGATTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCAACGTGATCTCTAGGGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAATTTTTTTTGGCTCTACTGATGTTATAGTCTCGCTCTTTTCTGCTAGGCGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGAGGAAAACAGGCAAAATTTTGGAAAGTCCAGTTATAA

Coding sequence (CDS)

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGATTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCAACGTGATCTCTAGGGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAATTTTTTTTGGCTCTACTGATGTTATAGTCTCGCTCTTTTCTGCTAGGCGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGAGGAAAACAGGCAAAATTTTGGAAAGTCCAGTTATAA

Protein sequence

MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGGKQAKFWKVQL

Homology

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BLAST of CmoCh12G001030.1 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.9e-04
Identity = 23/74 (31.08%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 82  LFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILR 141
           L  + G +     S+    P LL  D + ILKP +++L   GF    +  +++  P+IL 
Sbjct: 194 LKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILI 253

Query: 142 RSLKKQIVPCIDFL 156
           +S+K  + P I FL
Sbjct: 254 KSVKNSLQPRIRFL 267

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BLAST of CmoCh12G001030.1 vs. ExPASy TrEMBL
Match: A0A6J1GHP2 (uncharacterized protein LOC111454032 OS=Cucurbita moschata OX=3662 GN=LOC111454032 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 9.4e-125
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120

Query: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180
           RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK
Sbjct: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG
Sbjct: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 231

[Close]

BLAST of CmoCh12G001030.1 vs. ExPASy TrEMBL
Match: A0A6J1GGM9 (uncharacterized protein LOC111454031 OS=Cucurbita moschata OX=3662 GN=LOC111454031 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.0e-119
Identity = 221/231 (95.67%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCR+PNLLLADPDTILKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120

Query: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180
           RNGFTGHVLV+VISRDP ILRRSLKKQIVPCIDFLR FFGSTD +VSLFSARRGTWVLRK
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           F+ESVAPNIELLRANGVPDS IAKIFW+RPRTLAR+AEEFSDIVEKTKEAG
Sbjct: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEAG 231

[Close]

BLAST of CmoCh12G001030.1 vs. ExPASy TrEMBL
Match: A0A6J1KSF9 (uncharacterized protein LOC111496045 OS=Cucurbita maxima OX=3661 GN=LOC111496045 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 219/231 (94.81%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLRLFAQ+LQKFAGND TISRKFLSSLS+IS+STNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLK+TANPDSVIALFKAYGFTLSDTASIFCR+PNLLLADPDTILKPK EFLS
Sbjct: 61  ALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLS 120

Query: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180
           RNGFTGHVLV+VISRDP ILRRSLKKQIVPCIDFLR FFGSTD IVSLFSARRGTWVLRK
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           FSESVAPNIELLRANGVPDS IAKIFWVRPRTLARDAEEFSDIVEKTKEAG
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 231

[Close]

BLAST of CmoCh12G001030.1 vs. ExPASy TrEMBL
Match: A0A6J1GGI9 (uncharacterized protein LOC111454030 OS=Cucurbita moschata OX=3662 GN=LOC111454030 PE=3 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.0e-115
Identity = 214/231 (92.64%), Postives = 220/231 (95.24%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFK+PLRLFAQDLQKFAGNDTTISRKFLSSLSE+S+STNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKLPLRLFAQDLQKFAGNDTTISRKFLSSLSEVSESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120
           AL AAKRIHLK TANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDT LKPKFEFLS
Sbjct: 61  ALVAAKRIHLKPTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLS 120

Query: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180
           RNGFTGHVLV+VISRDP ILRRSLKKQIVPCID LR FFGST+ IVSLFS RRGTWVLR 
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRNFFGSTNGIVSLFSNRRGTWVLRN 180

Query: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           FSESVAPNIELLRANGVPDS IAK+ WVRPRTLARDAEEFSDIVEKTKEAG
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKMIWVRPRTLARDAEEFSDIVEKTKEAG 231

[Close]

BLAST of CmoCh12G001030.1 vs. ExPASy TrEMBL
Match: A0A6J1KMV5 (uncharacterized protein LOC111496044 OS=Cucurbita maxima OX=3661 GN=LOC111496044 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 7.7e-111
Identity = 208/231 (90.04%), Postives = 216/231 (93.51%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLR FAQ+LQKFAGND TISR FLSSLS+IS+STNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRFFAQELQKFAGNDPTISRNFLSSLSKISESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLK+TANPDSVIALFKAYGFTLSDTASIFCR+P+LLLADPDTILKPK EFLS
Sbjct: 61  ALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPHLLLADPDTILKPKIEFLS 120

Query: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180
           RNGFTGHVLV+VISRDP ILRRSLK  IVPCIDFLR FFGSTD IVSLFSARRGTWVL  
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKNLIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLHN 180

Query: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           FSESVAPNIELLRANGV DS IAK+ W RPRTLARDAEEFSDIVEKTKEAG
Sbjct: 181 FSESVAPNIELLRANGVLDSNIAKMIWARPRTLARDAEEFSDIVEKTKEAG 231

[Close]

BLAST of CmoCh12G001030.1 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-26
Identity = 69/224 (30.80%), Postives = 123/224 (54.91%), Query Frame = 0


Query: 9   PLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRI 68
           P+ +F+   Q F+   TT++ K  +   +  Q   + T++YL+ + G S DSA  A++++
Sbjct: 37  PIFVFSLQTQ-FSSPVTTLTSK--NPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKL 96

Query: 69  HLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHV 128
            L +   P++V+ L + +GFT +  +S+  + P LLLA+ +++L PK  F    G +  +
Sbjct: 97  LLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSL 156

Query: 129 LVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWV-LRKFSESVAP 188
           L   ++ DP IL RSL  Q++P  +FL+    S + IV+  + RR TWV L   ++++ P
Sbjct: 157 LARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVA--ALRRTTWVFLEDHTKNLVP 216

Query: 189 NIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           NI  +   GVP+  I  +    P  + +   EF  I ++ +E G
Sbjct: 217 NINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMG 255

[Close]

BLAST of CmoCh12G001030.1 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-21
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 0


Query: 46  TVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLL 105
           TV YLV + G S +SA + ++ + L ++  PDSV+ALFK +GFT     S+    P +L 
Sbjct: 58  TVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLS 117

Query: 106 ADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVI 165
             P+ ++ PK  F S  GF+      +IS  P++L  SL K+++PC D L+      + +
Sbjct: 118 LSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESV 177

Query: 166 VSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVE 225
           V         + L K +  V+  + + R  GVPD  I  +    P T       F++++ 
Sbjct: 178 VKCLKRGIRCFSL-KITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLN 237

Query: 226 KTKEAG 232
           +    G
Sbjct: 238 RVCSYG 242

[Close]

BLAST of CmoCh12G001030.1 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-16
Identity = 60/220 (27.27%), Postives = 105/220 (47.73%), Query Frame = 0


Query: 13  FAQDLQKFAGNDTTISRKFLSSLS-EISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLK 72
           F+  +QK +      S    + LS  + +  NN TV YLV +LG +   A + ++++  +
Sbjct: 20  FSLSVQKASPTSNFFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFE 79

Query: 73  TTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHVLVN 132
              NPDSV+ L  ++GFT S  ++I    P LL+AD +  L PK +FL   G +   +  
Sbjct: 80  DKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITE 139

Query: 133 VISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRKFSESVAPNIEL 192
           ++S  PEIL +   K I    DF++     T +  S  + +    + +   E+   N+ +
Sbjct: 140 IVSSVPEILGKKGHKTISVYYDFIK----DTLLEKSSKNEKLCHSLPQGNLENKIRNVSV 199

Query: 193 LRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           LR  G+P   +  +  +         E+F + ++K  E G
Sbjct: 200 LRELGMPHKLLFSLL-ISDSQPVCGKEKFEETLKKVVEMG 234

[Close]

BLAST of CmoCh12G001030.1 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-16
Identity = 60/220 (27.27%), Postives = 105/220 (47.73%), Query Frame = 0


Query: 13  FAQDLQKFAGNDTTISRKFLSSLS-EISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLK 72
           F+  +QK +      S    + LS  + +  NN TV YLV +LG +   A + ++++  +
Sbjct: 20  FSLSVQKASPTSNFFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFE 79

Query: 73  TTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHVLVN 132
              NPDSV+ L  ++GFT S  ++I    P LL+AD +  L PK +FL   G +   +  
Sbjct: 80  DKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITE 139

Query: 133 VISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRKFSESVAPNIEL 192
           ++S  PEIL +   K I    DF++     T +  S  + +    + +   E+   N+ +
Sbjct: 140 IVSSVPEILGKKGHKTISVYYDFIK----DTLLEKSSKNEKLCHSLPQGNLENKIRNVSV 199

Query: 193 LRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           LR  G+P   +  +  +         E+F + ++K  E G
Sbjct: 200 LRELGMPHKLLFSLL-ISDSQPVCGKEKFEETLKKVVEMG 234

[Close]

BLAST of CmoCh12G001030.1 vs. TAIR 10
Match: AT1G62085.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-15
Identity = 55/186 (29.57%), Postives = 90/186 (48.39%), Query Frame = 0


Query: 46  TVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLL 105
           +V YLV +LG  K  A + +K++  +   NPDSV++L +++GFT S  +SI    P LL+
Sbjct: 57  SVSYLVDSLGLPKKVAESISKKVSFEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLV 116

Query: 106 ADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVI 165
           AD +  + PK +FL   G +   L +++S  PEIL +   K I    DF++    +    
Sbjct: 117 ADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADK-- 176

Query: 166 VSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVE 225
            S F     +       E+   N+ +LR  GVP   +  +  +         E F + ++
Sbjct: 177 SSKFEKLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLL-ISDHQPVCGKENFEESLK 236

Query: 226 KTKEAG 232
           K  E G
Sbjct: 237 KVVEMG 239

The following BLAST results are available for this feature:

BLAST of CmoCh12G001030.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	7.9e-04	31.08	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of CmoCh12G001030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHP2	9.4e-125	100.00	uncharacterized protein LOC111454032 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1GGM9	2.0e-119	95.67	uncharacterized protein LOC111454031 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1KSF9	1.1e-117	94.81	uncharacterized protein LOC111496045 OS=Cucurbita maxima OX=3661 GN=LOC111496045...	[more]
A0A6J1GGI9	3.0e-115	92.64	uncharacterized protein LOC111454030 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1KMV5	7.7e-111	90.04	uncharacterized protein LOC111496044 OS=Cucurbita maxima OX=3661 GN=LOC111496044...	[more]

BLAST of CmoCh12G001030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	3.4e-26	30.80	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	3.3e-21	30.11	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	5.4e-16	27.27	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	5.4e-16	27.27	Mitochondrial transcription termination factor family protein	[more]
AT1G62085.1	1.2e-15	29.57	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 94..125 e-value: 0.0043 score: 26.3 coord: 130..162 e-value: 0.18 score: 20.9
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 81..239 e-value: 5.2E-15 score: 55.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 8..231
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 58..239 e-value: 3.7E-29 score: 103.7
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 8..231

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh12G001030	CmoCh12G001030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G001030.1:exon:797	CmoCh12G001030.1:exon:797	exon
CmoCh12G001030.1:exon:798	CmoCh12G001030.1:exon:798	exon
CmoCh12G001030.1:exon:799	CmoCh12G001030.1:exon:799	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G001030.1:cds	CmoCh12G001030.1:cds_3	CDS
CmoCh12G001030.1:cds	CmoCh12G001030.1:cds_2	CDS
CmoCh12G001030.1:cds	CmoCh12G001030.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh12G001030.1	CmoCh12G001030.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding