CmoCh11G019970.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	squamosa promoter-binding protein 1-like
Location	Cmo_Chr11: 13677663 .. 13679515 (-)
Sequence length	1535
RNA-Seq Expression	CmoCh11G019970.1
Synteny	CmoCh11G019970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGACGGTGACTGAAATCATACGCTCTCAACAAGTCACCACCAAACGTACCGCGTCACTGCCCCAAATTTTCAACTTGAAATCACAATTCCCAATTCCCAATTCATTTTCCGGTTCACAAACAGTCCCTTCCTCTTTCTCCCGCCAAACCCTCTTCTCTTTGGTCCTACCATCACAGAGCCTCTGTCGCTGTTCCACAGGCCCCCACCACTTCACGAGAAAGCTCACACATCATACAATTAAAGGCAGAGAGAGAGAGAAATTGAGTTTTGAGTTTTGAACATTCTTCATTACCCACCCTCCCTTCGTGTACGACCATTAGTAACAGCTGCAAAAACAGACACGGATTCAGAAATAAAGGAAAGGAAGATAAAAAATTGCAGTGTTTGTGTGTTAGTATGTGTGTGTTTGTGGTCCATTGCTTGTATCCCCTTCTTTTCTCTTTAAACTCCCTCCCCTTTTTTCTTCTATAATTCTTCCACCACTCCTCAAAGCGCTTTTGGAATCTTCTCTTCTCTTCTCCATCACTCCCACCAGCTGGTTTTTGTGGGTTTCTGATGGATGTTGGTAAAATTGAAACAACCCATCAGCAGAAACAGAGGGTGGTGATGGAGAAGGGGAGAGTGAAGGAGGCTATGGTGGTGGTGGATGAAGACGGGGAATATGATGAGGACAAGAAGAGGAAGGGTGTGATCGTCAGTGTTGGCGGTGGTGGCTCCGGGAAGAAGGCGGCGGGCGGCGGCGGAGGGATGCGGTGTTGTCAAGCTGAGAAGTGTACGGCTGACCTGAGTGAAGCCAAACCGTACCATAGGAGGCACAAGGTCTGTGAGGTTCATGCCAAATCTCAGGTTGTGCTTGTGGGTGGGTTCAGGCAGAGATTTTGTCAGCAATGTAGCAGGTTCAACAACTTTGGAATTTCACTTTTCATCTACTTTGATATCTTCTCTTGTCAGTTGTGTGTGATTTGACATGAATTCTTTACACATCAGCTATCTCTGTCGTTGTTTCAGGTCTTCATAAACTCAAATTTCATGTTGATTTTCAATTATAGGCCTTTTTCTTCTTTTCTTCTTTATTTTGGGCTGTTGATTCATCAAACCAAACACATAATTCCATCCTAGATTTCACATAATAAACCATTAGGAAGATGTCCAAATACCTGAAATTTCTGCAGTAAGACCAGCTCAAACATCTTGACATTGAATTGTGGTTGTAGATTCCACGAGCTGTCCGAATTTGACGAAATGAAAAGGAGTTGCCGGAGGCGTCTGGCCGGTCACAACGAGCGTCGAAGGAAGATCTCGGCCGAGTCCAATGCTGAATGCTCCATCCGCAAAGGGACTGGTGGAGCACAGATGAAGGATAGTAGTGTCTGTGGACAGGCTGATGATCAGGGGAGAATTCAAATGACCATTCAAGAAAACGCTGCATACAAGCACTTCCAAATCAGATAAGTTATGAACATAACTCAATCTGCTCAGTATGCTCTCTCTCTTCTGTCATTCAAGAACTGCTGTATTATGTCCCTCCCAAGCAGGCTCTGTTGATGCATCCTGATCTACATGAAAGAATTGCCTTGTTAGAGGATTAAGCCATTAATAATTAAACTCAAGATTAGCCAAACTTTGATCATTATCTGTCCTGTAATATGTAAAAGATCATCAATCTAGTTCAGATTGATCTGTTTCTTTCTGGTTCTATCATCAGCTGCTTAAAATTACCTGAAATAAAAAGTACCTGCGTCATGTGTCATGTGCTTGTCAGTTTTAAGAGTTACAGCCCACAATATCAGATTTCTGGTGCTGATGGTGTCACGTAGCTTTCTTCAATAATACTGGAGAGATATTTTGAAT

mRNA sequence

CACGACGGTGACTGAAATCATACGCTCTCAACAAGTCACCACCAAACGTACCGCGTCACTGCCCCAAATTTTCAACTTGAAATCACAATTCCCAATTCCCAATTCATTTTCCGGTTCACAAACAGTCCCTTCCTCTTTCTCCCGCCAAACCCTCTTCTCTTTGGTCCTACCATCACAGAGCCTCTGTCGCTGTTCCACAGGCCCCCACCACTTCACGAGAAAGCTCACACATCATACAATTAAAGGCAGAGAGAGAGAGAAATTGAGTTTTGAGTTTTGAACATTCTTCATTACCCACCCTCCCTTCGTGTACGACCATTAGTAACAGCTGCAAAAACAGACACGGATTCAGAAATAAAGGAAAGGAAGATAAAAAATTGCAGTGTTTGTGTGTTAGTATGTGTGTGTTTGTGGTCCATTGCTTGTATCCCCTTCTTTTCTCTTTAAACTCCCTCCCCTTTTTTCTTCTATAATTCTTCCACCACTCCTCAAAGCGCTTTTGGAATCTTCTCTTCTCTTCTCCATCACTCCCACCAGCTGGTTTTTGTGGGTTTCTGATGGATGTTGGTAAAATTGAAACAACCCATCAGCAGAAACAGAGGGTGGTGATGGAGAAGGGGAGAGTGAAGGAGGCTATGGTGGTGGTGGATGAAGACGGGGAATATGATGAGGACAAGAAGAGGAAGGGTGTGATCGTCAGTGTTGGCGGTGGTGGCTCCGGGAAGAAGGCGGCGGGCGGCGGCGGAGGGATGCGGTGTTGTCAAGCTGAGAAGTGTACGGCTGACCTGAGTGAAGCCAAACCGTACCATAGGAGGCACAAGGTCTGTGAGGTTCATGCCAAATCTCAGGTTGTGCTTGTGGGTGGGTTCAGGCAGAGATTTTGTCAGCAATGTAGCAGATTCCACGAGCTGTCCGAATTTGACGAAATGAAAAGGAGTTGCCGGAGGCGTCTGGCCGGTCACAACGAGCGTCGAAGGAAGATCTCGGCCGAGTCCAATGCTGAATGCTCCATCCGCAAAGGGACTGGTGGAGCACAGATGAAGGATAGTAGTGTCTGTGGACAGGCTGATGATCAGGGGAGAATTCAAATGACCATTCAAGAAAACGCTGCATACAAGCACTTCCAAATCAGATAAGTTATGAACATAACTCAATCTGCTCAGTATGCTCTCTCTCTTCTGTCATTCAAGAACTGCTGTATTATGTCCCTCCCAAGCAGGCTCTGTTGATGCATCCTGATCTACATGAAAGAATTGCCTTGTTAGAGGATTAAGCCATTAATAATTAAACTCAAGATTAGCCAAACTTTGATCATTATCTGTCCTGTAATATGTAAAAGATCATCAATCTAGTTCAGATTGATCTGTTTCTTTCTGGTTCTATCATCAGCTGCTTAAAATTACCTGAAATAAAAAGTACCTGCGTCATGTGTCATGTGCTTGTCAGTTTTAAGAGTTACAGCCCACAATATCAGATTTCTGGTGCTGATGGTGTCACGTAGCTTTCTTCAATAATACTGGAGAGATATTTTGAAT

Coding sequence (CDS)

ATGGATGTTGGTAAAATTGAAACAACCCATCAGCAGAAACAGAGGGTGGTGATGGAGAAGGGGAGAGTGAAGGAGGCTATGGTGGTGGTGGATGAAGACGGGGAATATGATGAGGACAAGAAGAGGAAGGGTGTGATCGTCAGTGTTGGCGGTGGTGGCTCCGGGAAGAAGGCGGCGGGCGGCGGCGGAGGGATGCGGTGTTGTCAAGCTGAGAAGTGTACGGCTGACCTGAGTGAAGCCAAACCGTACCATAGGAGGCACAAGGTCTGTGAGGTTCATGCCAAATCTCAGGTTGTGCTTGTGGGTGGGTTCAGGCAGAGATTTTGTCAGCAATGTAGCAGATTCCACGAGCTGTCCGAATTTGACGAAATGAAAAGGAGTTGCCGGAGGCGTCTGGCCGGTCACAACGAGCGTCGAAGGAAGATCTCGGCCGAGTCCAATGCTGAATGCTCCATCCGCAAAGGGACTGGTGGAGCACAGATGAAGGATAGTAGTGTCTGTGGACAGGCTGATGATCAGGGGAGAATTCAAATGACCATTCAAGAAAACGCTGCATACAAGCACTTCCAAATCAGATAA

Protein sequence

MDVGKIETTHQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTIQENAAYKHFQIR

Homology

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BLAST of CmoCh11G019970.1 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.0e-35
Identity = 88/175 (50.29%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 20  KGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSE 79
           +G +K+   +V+ED E D D++ +     V G    + +   GG +R CQ ++CTAD+ E
Sbjct: 9   QGYMKKKSYLVEEDMETDTDEEEEVGRDRVRG---SRGSINRGGSLRLCQVDRCTADMKE 68

Query: 80  AKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERR 139
           AK YHRRHKVCEVHAK+  V + G  QRFCQQCSRFH+L EFDE KRSCRRRLAGHNERR
Sbjct: 69  AKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 128

Query: 140 RKISAESN-AECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI-QENAAYKHFQIR 193
           RK S ES   E S R+G  G       V  Q  ++ R++MT+   N+++K  QIR
Sbjct: 129 RKSSGESTYGEGSGRRGING------QVVMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.2e-32
Identity = 83/163 (50.92%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 31  DEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSEAKPYHRRHKVC 90
           +EDG  DEDK++K V+  V G  + +  +      R CQ ++CT +L+EAK Y+RRH+VC
Sbjct: 34  EEDGG-DEDKRKK-VMERVRGPSTDRVPS------RLCQVDRCTVNLTEAKQYYRRHRVC 93

Query: 91  EVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERRRKISAESNAEC 150
           EVHAK+    V G RQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRKIS +S  E 
Sbjct: 94  EVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEG 153

Query: 151 SIRKGTGGAQMKDSSVCGQADDQGRIQMTI-QENAAYKHFQIR 193
           S R+G  G  +       Q  ++ R+   +   N+++K  QIR
Sbjct: 154 SGRRGFSGQLI-------QTQERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy Swiss-Prot
Match: Q9S7P5 (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=SPL12 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 2   DVGKIETTHQQKQRVVMEKGRVKEAMVVV--DEDGEYDEDKKRKGVIVSVGGG---GSGK 61
           D G +E    +++R+ MEK + + A+ VV  +ED   D+D  R  + +++GG    G+G 
Sbjct: 56  DEGNVEI--MERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHR--LTLNLGGNNIEGNGV 115

Query: 62  KAAGGGGGMR----CCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQC 121
           K    GGG+     CCQ + C ADLS+ K YHRRHKVCE+H+K+   LVGG  QRFCQQC
Sbjct: 116 KKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQC 175

Query: 122 SRFHELSEFDEMKRSCRRRLAGHNERRRKISAES 147
           SRFH L EFDE KRSCRRRLAGHN+RRRK + ++
Sbjct: 176 SRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDT 205

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BLAST of CmoCh11G019970.1 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.0e-31
Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 6   IETTHQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGM 65
           ++T+  + +RV+   G  ++     +E+ +  ED K+   +       SGK+A+  G   
Sbjct: 1   MDTSKGEGKRVIKLPGSQEQG----EEEDDIGEDSKKTRALTP-----SGKRAS--GSTQ 60

Query: 66  RCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMK 125
           R CQ E C A+++ AKPYHRRHKVCE HAK+ VVL  G +QRFCQQCSRFHELSEFDE K
Sbjct: 61  RSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAK 120

Query: 126 RSCRRRLAGHNERRRKISAESN 148
           RSCRRRLAGHNERRRK S +++
Sbjct: 121 RSCRRRLAGHNERRRKSSHDTH 131

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-30
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 50  GGGGSGKKAAGGGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFC 109
           G G +G  A  GGGG   CQ E+C  DLSEA  Y+RRHKVC+ H+K  VVLV G RQRFC
Sbjct: 92  GAGRAGGGAPSGGGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFC 151

Query: 110 QQCSRFHELSEFDEMKRSCRRRLAGHNERRRKISAES 147
           QQCSRFHEL+EFD+ KRSCRRRLAGHNERRRK +A++
Sbjct: 152 QQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAADT 188

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy TrEMBL
Match: A0A6J1EWC3 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111437155 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.6e-101
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MDVGKIETTHQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG 60
           MDVGKIETTHQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG
Sbjct: 1   MDVGKIETTHQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG 60

Query: 61  GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSE 120
           GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSE
Sbjct: 61  GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSE 120

Query: 121 FDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI 180
           FDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI
Sbjct: 121 FDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI 180

Query: 181 QENAAYKHFQIR 193
           QENAAYKHFQIR
Sbjct: 181 QENAAYKHFQIR 192

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy TrEMBL
Match: A0A6J1JPM8 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486359 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.6e-97
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MDVGKIETTHQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG 60
           MDVGKIETTHQQKQRVVMEKGRVKE MVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG
Sbjct: 1   MDVGKIETTHQQKQRVVMEKGRVKEDMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG 60

Query: 61  GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSE 120
           GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSE
Sbjct: 61  GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSE 120

Query: 121 FDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI 180
           FDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGT GAQMKD SVCGQADDQGRIQMTI
Sbjct: 121 FDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGT-GAQMKD-SVCGQADDQGRIQMTI 180

Query: 181 QENAAYKHFQIR 193
           QENAAYKHFQIR
Sbjct: 181 QENAAYKHFQIR 190

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy TrEMBL
Match: A0A6P3Z3U5 (squamosa promoter-binding protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC107406208 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 6.4e-60
Identity = 140/201 (69.65%), Postives = 161/201 (80.10%), Query Frame = 0


Query: 1   MDVGKIETTHQQKQRVVMEKGRVKEAMVVVDE--DGEY------DEDKKRKGVIVSVGGG 60
           MD+GKIE   + +QR+V+ K +V   MVV  E  D EY      +EDKKRKGV V  GGG
Sbjct: 1   MDLGKIE---RNRQRMVIGKEKV---MVVKKEERDEEYEQVGCLEEDKKRKGV-VGGGGG 60

Query: 61  GSGKKAAGGG-GGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQ 120
           GSG+K +GGG GG+RCCQAEKCTADL++AK YHRRHKVCE+HAK+QVV+VGG RQRFCQQ
Sbjct: 61  GSGRKGSGGGVGGLRCCQAEKCTADLTDAKQYHRRHKVCEIHAKAQVVVVGGLRQRFCQQ 120

Query: 121 CSRFHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQAD 180
           CSRFHELSEFDE KRSCRRRLAGHNERRRK SAES AE S  KG+   Q+KD  VCG+ D
Sbjct: 121 CSRFHELSEFDETKRSCRRRLAGHNERRRKNSAESPAESSSHKGS-SPQLKD-IVCGKVD 180

Query: 181 DQGRIQMTIQENAAYKHFQIR 193
           D+GRIQ++IQENA YKHFQIR
Sbjct: 181 DRGRIQISIQENATYKHFQIR 192

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy TrEMBL
Match: A0A7N2MC61 (SBP-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.1e-58
Identity = 129/197 (65.48%), Postives = 153/197 (77.66%), Query Frame = 0


Query: 1   MDVGKIETTHQ--QKQRVVMEKGRVKEAMVVVDEDGE--YDEDKKRKGVIVSVGGGGSGK 60
           M +GK +  +Q  +KQ+  ++K  ++E+    DE+ E   +E+K++KGV+ SVG G +GK
Sbjct: 1   MSLGKADGNYQRMEKQQKAVKKEAMRESS---DEEFESLEEEEKRQKGVVGSVGFGNNGK 60

Query: 61  KAAG-GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRF 120
           K     G GMRCCQAEKCTADLS+AKPYHRRHKVCE HAK+QVVLVGG RQRFCQQCSRF
Sbjct: 61  KGGSTAGNGMRCCQAEKCTADLSDAKPYHRRHKVCEQHAKAQVVLVGGIRQRFCQQCSRF 120

Query: 121 HELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGR 180
           HELSEFDE KRSCRRRLAGHNERRRK SAES+AE S RKG GG       VCGQ DD+GR
Sbjct: 121 HELSEFDETKRSCRRRLAGHNERRRKNSAESHAEGSSRKGIGGNHQLKDLVCGQVDDRGR 180

Query: 181 IQMTIQENAAYKHFQIR 193
           I++TI EN+ YKHFQIR
Sbjct: 181 IKITIHENSTYKHFQIR 194

[Close]

BLAST of CmoCh11G019970.1 vs. ExPASy TrEMBL
Match: A0A2I4E643 (squamosa promoter-binding protein 1-like OS=Juglans regia OX=51240 GN=LOC108986645 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.5e-56
Identity = 127/180 (70.56%), Postives = 148/180 (82.22%), Query Frame = 0


Query: 14  QRVVMEKGRVKEAMVVVDEDGE-YDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEK 73
           Q++  ++  VK+ +V  DE+ E  +E+K++KGV+   GGGG GKK   GG G+RCCQAEK
Sbjct: 11  QKMEKQQKVVKKEVVESDEELEGVEEEKRKKGVM--DGGGGLGKK---GGNGLRCCQAEK 70

Query: 74  CTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRL 133
           CTADLS+AK YHRRHKVCE HAK+QVVLVGG RQRFCQQCSRFHELSEFDE KRSCRRRL
Sbjct: 71  CTADLSDAKQYHRRHKVCEFHAKAQVVLVGGIRQRFCQQCSRFHELSEFDETKRSCRRRL 130

Query: 134 AGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTIQENAAYKHFQIR 193
           AGHNERRRK SAES+AE S RKGT G Q+KD  VCGQ DD+GRIQ++I EN+ YKHFQIR
Sbjct: 131 AGHNERRRKNSAESHAEGSSRKGT-GTQLKD-IVCGQVDDRGRIQISIHENSTYKHFQIR 183

[Close]

BLAST of CmoCh11G019970.1 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-36
Identity = 88/175 (50.29%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 20  KGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSE 79
           +G +K+   +V+ED E D D++ +     V G    + +   GG +R CQ ++CTAD+ E
Sbjct: 9   QGYMKKKSYLVEEDMETDTDEEEEVGRDRVRG---SRGSINRGGSLRLCQVDRCTADMKE 68

Query: 80  AKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERR 139
           AK YHRRHKVCEVHAK+  V + G  QRFCQQCSRFH+L EFDE KRSCRRRLAGHNERR
Sbjct: 69  AKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 128

Query: 140 RKISAESN-AECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI-QENAAYKHFQIR 193
           RK S ES   E S R+G  G       V  Q  ++ R++MT+   N+++K  QIR
Sbjct: 129 RKSSGESTYGEGSGRRGING------QVVMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of CmoCh11G019970.1 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-36
Identity = 88/175 (50.29%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 20  KGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSE 79
           +G +K+   +V+ED E D D++ +     V G    + +   GG +R CQ ++CTAD+ E
Sbjct: 9   QGYMKKKSYLVEEDMETDTDEEEEVGRDRVRG---SRGSINRGGSLRLCQVDRCTADMKE 68

Query: 80  AKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERR 139
           AK YHRRHKVCEVHAK+  V + G  QRFCQQCSRFH+L EFDE KRSCRRRLAGHNERR
Sbjct: 69  AKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 128

Query: 140 RKISAESN-AECSIRKGTGGAQMKDSSVCGQADDQGRIQMTI-QENAAYKHFQIR 193
           RK S ES   E S R+G  G       V  Q  ++ R++MT+   N+++K  QIR
Sbjct: 129 RKSSGESTYGEGSGRRGING------QVVMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of CmoCh11G019970.1 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-33
Identity = 83/163 (50.92%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 31  DEDGEYDEDKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSEAKPYHRRHKVC 90
           +EDG  DEDK++K V+  V G  + +  +      R CQ ++CT +L+EAK Y+RRH+VC
Sbjct: 34  EEDGG-DEDKRKK-VMERVRGPSTDRVPS------RLCQVDRCTVNLTEAKQYYRRHRVC 93

Query: 91  EVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERRRKISAESNAEC 150
           EVHAK+    V G RQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRKIS +S  E 
Sbjct: 94  EVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEG 153

Query: 151 SIRKGTGGAQMKDSSVCGQADDQGRIQMTI-QENAAYKHFQIR 193
           S R+G  G  +       Q  ++ R+   +   N+++K  QIR
Sbjct: 154 SGRRGFSGQLI-------QTQERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of CmoCh11G019970.1 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-32
Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 2   DVGKIETTHQQKQRVVMEKGRVKEAMVVV--DEDGEYDEDKKRKGVIVSVGGG---GSGK 61
           D G +E    +++R+ MEK + + A+ VV  +ED   D+D  R  + +++GG    G+G 
Sbjct: 56  DEGNVEI--MERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHR--LTLNLGGNNIEGNGV 115

Query: 62  KAAGGGGGMR----CCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQC 121
           K    GGG+     CCQ + C ADLS+ K YHRRHKVCE+H+K+   LVGG  QRFCQQC
Sbjct: 116 KKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQC 175

Query: 122 SRFHELSEFDEMKRSCRRRLAGHNERRRKISAES 147
           SRFH L EFDE KRSCRRRLAGHN+RRRK + ++
Sbjct: 176 SRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDT 205

[Close]

BLAST of CmoCh11G019970.1 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-28
Identity = 66/118 (55.93%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 31  DEDGEYDE---DKKRKGVIVSVGGGGSGKKAAGGGGGMRCCQAEKCTADLSEAKPYHRRH 90
           DED   +E   +KK+KG   S  G                CQ E CTAD+S+AK YH+RH
Sbjct: 29  DEDTFEEEEALEKKQKGKATSSSG---------------VCQVESCTADMSKAKQYHKRH 88

Query: 91  KVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERRRKISAE 146
           KVC+ HAK+  V + G  QRFCQQCSRFH LSEFDE KRSCRRRLAGHNERRRK + +
Sbjct: 89  KVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

The following BLAST results are available for this feature:

BLAST of CmoCh11G019970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7A9	9.0e-35	50.29	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q9S758	3.2e-32	50.92	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q9S7P5	2.7e-31	51.30	Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=SPL...	[more]
Q38741	6.0e-31	52.11	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
Q6Z461	8.7e-30	68.04	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of CmoCh11G019970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWC3	2.6e-101	100.00	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JPM8	8.6e-97	98.44	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6P3Z3U5	6.4e-60	69.65	squamosa promoter-binding protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC1074...	[more]
A0A7N2MC61	2.1e-58	65.48	SBP-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2I4E643	2.5e-56	70.56	squamosa promoter-binding protein 1-like OS=Juglans regia OX=51240 GN=LOC1089866...	[more]

BLAST of CmoCh11G019970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	6.4e-36	50.29	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	6.4e-36	50.29	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	2.3e-33	50.92	squamosa promoter binding protein-like 5	[more]
AT3G60030.1	1.9e-32	51.30	squamosa promoter-binding protein-like 12	[more]
AT2G33810.1	2.9e-28	55.93	squamosa promoter binding protein-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 68..141 e-value: 1.4E-31 score: 108.6
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 65..142 score: 31.949076
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 59..129 e-value: 1.3E-31 score: 110.5
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 66..145
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 35..192
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 35..192

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G019970	CmoCh11G019970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G019970.1:exon:10277	CmoCh11G019970.1:exon:10277	exon
CmoCh11G019970.1:exon:10276	CmoCh11G019970.1:exon:10276	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G019970.1:three_prime_utr	CmoCh11G019970.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G019970.1:cds	CmoCh11G019970.1:cds_2	CDS
CmoCh11G019970.1:cds	CmoCh11G019970.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G019970.1:five_prime_utr	CmoCh11G019970.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G019970.1	CmoCh11G019970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding