CmoCh11G006030.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G006030.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Golgin subfamily A member 4
Location	Cmo_Chr11: 2911179 .. 2912807 (-)
Sequence length	663
RNA-Seq Expression	CmoCh11G006030.1
Synteny	CmoCh11G006030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGGCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTCCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCTGTCGGCGAGCACAAGCAACGCCTGTTCGCCGACCCACCGCCACTGCTGCTACTCCCAGCCGCCGACGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATGTGGGTAACACATTTTTTCTTCTTTTCTTCTGTCCCTTTCAATCTTGGTTTTGGTATTTGGTTTATGATGGAGAAAAGAATATGTGGAATTGGAGTTTTTATACCAGAGTTAAAACAAACATCTTTATACTCAAAATAGATAATATCGTACTATTTTGTAGAGTCGTGGTTCCTAACAATGACTTAGGAGTGCTATATTATTCATCGTCCTTTGCTTGAATGATGGGCCAAAGTTCACGATCAATAACAAAAGAATCTAATTCTTCTTCCTATACGAAAAGAAAAGGTTTTTTTTTTCCTCAACTTTTTCTTTCCTTTCTTTCATGCAATGCAAAAGGAATCATTGGAGAATAAAGAGAGAAAGTATAACATAATTGAGTGTGGGAGTACCAAAGCTTGCCACTTCATGGGTTCCATGGCAAACCCAAAGCTCTATTCTAGTATCTAAAATTTAGTGCATAACACAAGTTGGGCGTGGAATTGTAGAGTGGGGTATTCCCGGTCATTGCTGAGTGGTTTCCTACTCACATTCTTTAACCTAAGTTGCTCTTCTTTCTTTCGTGGTTTGTTGTTTTGCATGAAACAAATGTGTTGTCGGAATCTTGAATTCATCCACAAACAAACACTCCACTTTATTAACATCACTTTATTCAGGATTTCTCGTCTTCATTTGAATGAAACAAACCTCCATTCCTCATTTTCATTTCTTAAACATGTCAAATAAGAAGTAAGATTAGATGATGTTGGTAATTAATTAATTAATTAAGCCATCATTAAAGTTTGACCCATTGGATATAAGAATAATTGAAAATTTGGGTGTCACATGGAAGATGGTTGATAATAATTCAAGAAATCCCCACCCTCCCATTCACATGTGGATGCATTGCAGCATATGGAAATGGATCCACAAAATCCGGTTTTCATTTTAACTTATAAGTCCGTTCATATACCAAACTCAATCATCTGGCAGCTTTGATGATGGGAAAGAACAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGCTGTTATGGAGGAAACTGAGAAGAGAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTCATTCCTTATGATCCTTTCTCTTATTCACAGAATTTCGACCAAGGCAACGCTACCGAAGAGCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

mRNA sequence

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGGCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTCCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCTGTCGGCGAGCACAAGCAACGCCTGTTCGCCGACCCACCGCCACTGCTGCTACTCCCAGCCGCCGACGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATGTGGCTTTGATGATGGGAAAGAACAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGCTGTTATGGAGGAAACTGAGAAGAGAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTCATTCCTTATGATCCTTTCTCTTATTCACAGAATTTCGACCAAGGCAACGCTACCGAAGAGCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

Coding sequence (CDS)

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGGCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTCCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCTGTCGGCGAGCACAAGCAACGCCTGTTCGCCGACCCACCGCCACTGCTGCTACTCCCAGCCGCCGACGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATGTGGCTTTGATGATGGGAAAGAACAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGCTGTTATGGAGGAAACTGAGAAGAGAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTCATTCCTTATGATCCTTTCTCTTATTCACAGAATTTCGACCAAGGCAACGCTACCGAAGAGCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

Protein sequence

MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRTHSDAACNETTPDALSASTSNACSPTHRHCCYSQPPTLPARGPNCFAHPKAPSGLPAKAVNHVALMMGKNSSKQTIRLGRWRSGYQPNLWKLLWRKLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEPDILCRSFSARFALADAASAFFLDNQLQ

Homology

[Close]

BLAST of CmoCh11G006030.1 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 66/100 (66.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 128 KNSSKQTIRLGRWR--SGYQPNLWKLLWRKLRREKR------NKTTTYSSG-NFIPYDPF 187
           +   + TIRLG WR  +  QPN+WK+LWRKLRREKR      N TT YSSG   IPYDPF
Sbjct: 5   RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 64

Query: 188 SYSQNFDQGNATEEPDILCRSFSARFALADAASAFFLDNQ 219
           SYSQNFDQG A EE D L RSFSARFALAD ASA FL  Q
Sbjct: 65  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 104

[Close]

BLAST of CmoCh11G006030.1 vs. ExPASy TrEMBL
Match: A0A200PNY2 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g34 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-10
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 134 TIRLGRWRSGYQPNLWKLLWRKLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEP 193
           T+ L   RS   P  W+LLWRK+++EK+    + S    +PYDP++YSQNFD G+A  EP
Sbjct: 32  TLNLPVTRSSSTPK-WRLLWRKIKKEKKKIFDSSSVQAQVPYDPYTYSQNFDHGSAWAEP 91

Query: 194 DILCRSFSARFA 206
           D L RSFSARFA
Sbjct: 92  DNLSRSFSARFA 102

[Close]

BLAST of CmoCh11G006030.1 vs. ExPASy TrEMBL
Match: I1KIS1 (Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 149 WKLLWRKLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEPDILCRSFSARFA 206
           WK+LW KL++EK+    + SS   +PYDP++YSQNFDQG A +EPD   RSFS RFA
Sbjct: 37  WKVLWMKLKKEKKKLFESASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 93

[Close]

BLAST of CmoCh11G006030.1 vs. ExPASy TrEMBL
Match: V7CQ59 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G313800g PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 128 KNSSKQTIRLGRWRSGYQPN--LWKLLWRKLRREKRNKTTTYSSGNFIPYDPFSYSQNFD 187
           +NS K+T+ LGR           WKLLW K++REK+    + +S   +PYD  +YSQNFD
Sbjct: 7   RNSGKRTVHLGRCHHEIVATKLRWKLLWMKIKREKKRLFESAASFQ-VPYDQQTYSQNFD 66

Query: 188 QGNATEEPDILCRSFSARFA 206
           QG A +EPD L RSFS RFA
Sbjct: 67  QGTALDEPDNLSRSFSVRFA 85

[Close]

BLAST of CmoCh11G006030.1 vs. ExPASy TrEMBL
Match: A0A4D6LA15 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g5650 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 128 KNSSKQTIRLGRWRSGYQ------PNL-WKLLWRKLRREKRNKTTTYSSGNF-IPYDPFS 187
           +NS K+ I LGR     +      P L WKLLW K+++EK+     + S +F +PYD  +
Sbjct: 41  RNSGKRAIHLGRCHHEIEHVHSLPPKLRWKLLWMKIKKEKKR---LFRSASFQVPYDQHT 100

Query: 188 YSQNFDQGNATEEPDILCRSFSARFA 206
           YSQNFDQG A +EPD L RSFS RFA
Sbjct: 101 YSQNFDQGTAIDEPDNLSRSFSVRFA 123

[Close]

BLAST of CmoCh11G006030.1 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410.6 bits (1054), Expect = 8.5e-111
Identity = 207/246 (84.15%), Postives = 209/246 (84.96%), Query Frame = 0


Query: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60
           MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT
Sbjct: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60

Query: 61  HSDAACNETTPDALSASTSNACSPTHRHCCYSQPPTLPARGPNCFAHPKAPSGLPAKAVN 120
           H DAACNETTPDA SASTS A SPTHRHCCYSQP  LPARGPNCFAHPKAPSGLPAKAVN
Sbjct: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120

Query: 121 H--------------------------VALMMGKNSSKQTIRLGRWRSGYQPNLWKLLWR 180
           H                           ALMMGK SSKQTIRLGRWRSGYQPNLWKLLWR
Sbjct: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWR 180

Query: 181 KLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEPDILCRSFSARFALADAASAFF 221
           KLRR+KRNKTTTYSSGN IPYDPFSYS NFDQGNA E+PDILCRSFSARFALADAASAFF
Sbjct: 181 KLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFF 240

[Close]

BLAST of CmoCh11G006030.1 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410.6 bits (1054), Expect = 8.5e-111
Identity = 207/246 (84.15%), Postives = 209/246 (84.96%), Query Frame = 0


Query: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60
           MESLRLQNGRISSLWTYTNIR+IHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT
Sbjct: 1   MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60

Query: 61  HSDAACNETTPDALSASTSNACSPTHRHCCYSQPPTLPARGPNCFAHPKAPSGLPAKAVN 120
           H DAACNETTPDA SASTS A SPTHRHCCYSQP  LPARGPNCFAHPKAPSGLPAKAVN
Sbjct: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120

Query: 121 H--------------------------VALMMGKNSSKQTIRLGRWRSGYQPNLWKLLWR 180
           H                           ALMMGK SSKQTIRLGRWRSGYQPNLWK+LWR
Sbjct: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWR 180

Query: 181 KLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEPDILCRSFSARFALADAASAFF 221
           KLRREKRNKTTTYSSGN IPYDPFSYS NFDQGNA EEPDILCRSFSARFALADAASAFF
Sbjct: 181 KLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFF 240

[Close]

BLAST of CmoCh11G006030.1 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-22
Identity = 66/100 (66.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 128 KNSSKQTIRLGRWR--SGYQPNLWKLLWRKLRREKR------NKTTTYSSG-NFIPYDPF 187
           +   + TIRLG WR  +  QPN+WK+LWRKLRREKR      N TT YSSG   IPYDPF
Sbjct: 10  RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 69

Query: 188 SYSQNFDQGNATEEPDILCRSFSARFALADAASAFFLDNQ 219
           SYSQNFDQG A EE D L RSFSARFALAD ASA FL  Q
Sbjct: 70  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 109

[Close]

BLAST of CmoCh11G006030.1 vs. NCBI nr
Match: OUZ99926.1 (hypothetical protein BVC80_9069g34 [Macleaya cordata])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-09
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 134 TIRLGRWRSGYQPNLWKLLWRKLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEP 193
           T+ L   RS   P  W+LLWRK+++EK+    + S    +PYDP++YSQNFD G+A  EP
Sbjct: 32  TLNLPVTRSSSTPK-WRLLWRKIKKEKKKIFDSSSVQAQVPYDPYTYSQNFDHGSAWAEP 91

Query: 194 DILCRSFSARFA 206
           D L RSFSARFA
Sbjct: 92  DNLSRSFSARFA 102

[Close]

BLAST of CmoCh11G006030.1 vs. NCBI nr
Match: KAG5009349.1 (hypothetical protein JHK87_017864 [Glycine soja] >KAG5022044.1 hypothetical protein JHK85_018386 [Glycine max] >KAG5142226.1 hypothetical protein JHK82_017921 [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-09
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 149 WKLLWRKLRREKRNKTTTYSSGNFIPYDPFSYSQNFDQGNATEEPDILCRSFSARFA 206
           WK+LW KL++EK+    + SS   +PYDP++YSQNFDQG A +EPD   RSFS RFA
Sbjct: 37  WKVLWMKLKKEKKKLFESASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 93

[Close]

BLAST of CmoCh11G006030.1 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 121 HVALMMGKNSSKQTIRLGRWRSGYQPN-----------LWKLLWRKLRREKRNKTTTYSS 180
           +V ++   +S ++TI LGR+    +              WK+L  KL+       +  SS
Sbjct: 12  NVNVLSSASSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKL----LPSRASS 71

Query: 181 GNFIPYDPFSYSQNFDQG---NATEEPDILCRSFSARFA 206
              + Y+P  YS NFDQG   +  +EP+ L RSFS RFA
Sbjct: 72  TKVVAYEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFA 106

The following BLAST results are available for this feature:

BLAST of CmoCh11G006030.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G006030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3	7.2e-23	66.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1	[more]
A0A200PNY2	9.1e-10	52.78	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g34 PE=4 SV=1	[more]
I1KIS1	1.6e-09	57.89	Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1	[more]
V7CQ59	1.6e-09	50.00	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G313800g PE=4 ...	[more]
A0A4D6LA15	2.0e-09	48.84	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g5650 PE=4 SV=1	[more]

BLAST of CmoCh11G006030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021839.1	8.5e-111	84.15	hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587950.1	8.5e-111	84.15	hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653121.1	1.5e-22	66.00	hypothetical protein Csa_019717, partial [Cucumis sativus]	[more]
OUZ99926.1	1.9e-09	52.78	hypothetical protein BVC80_9069g34 [Macleaya cordata]	[more]
KAG5009349.1	3.2e-09	57.89	hypothetical protein JHK87_017864 [Glycine soja] >KAG5022044.1 hypothetical prot...	[more]

BLAST of CmoCh11G006030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	1.5e-04	33.33	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 125..216
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 125..216

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G006030	CmoCh11G006030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G006030.1:exon:4407	CmoCh11G006030.1:exon:4407	exon
CmoCh11G006030.1:exon:4408	CmoCh11G006030.1:exon:4408	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G006030.1:cds	CmoCh11G006030.1:cds_2	CDS
CmoCh11G006030.1:cds	CmoCh11G006030.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G006030.1	CmoCh11G006030.1-protein	polypeptide