CmoCh11G005420.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005420.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF4050 family protein
Location	Cmo_Chr11: 2639641 .. 2642632 (-)
Sequence length	1308
RNA-Seq Expression	CmoCh11G005420.1
Synteny	CmoCh11G005420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCGTATAAACCACCAACAAGAATCCACCAATTGAACTATCCATTTCTCCATTTCGACGCCCATCTCTTCTCTGAATTTCTCGGAAACAACCCACCAATTTTCTATTTTGGTATTTAGTTTCCACTCCCCACTCAACTTTCCCCTTTTTCCCTCATCCAACTTCCTGCTTTCTTGCCCCAACCCTACTCCATCTCTCGCCTGTTACAGGTTCTTAGCTTCACTCTCGTTTTCCCTGAATCGATGCCCTTCTCTGCGCTTTTGGCTTAATATCAACATGGTTATGCTTAATAGTTCCTTCGCCGCCTGGATCAGCCGCTTGTTCGCCTGCATGGGGTAAGTTCTCGATTTTCCTCATCAATCGTTCATTGCGGTCTTGTAAAGGAGTTGTTATATTTGCTTCTAATGGAGTTTTGTAATGACCCTTTTGTGTTATCCATGGAATTGCTTCTGTTTTCTGGCTTACTGAATAGTGGACCATCTCCTTTTTTCTTCTTTTGCCAAGAATTTCACTATTTCAACTGTAATGTTTAATCCAAACGAAGAAAGGGGCTTGGGGGAAGTTGTGGGATTTCATGTTCTTTTGGATTGCTGGTATTAATGTGAATTCCTGAAGGAACTATGAACCAAACTAAGTTTATTAAGATTCAAAGTTCGAAACCAATCCACATTCTTAGTAATGTTTTTGCTGCAATTTTATAGCATATATAGTGCTTTATTAGGTTTATAACAGTGCAGGGGTTGTTTTGGATGCTGCACTAAACCAACACCTATTATTGCTGTGGATGAACCATCTAAGGGATTAAGAATTCAAGGACGAGTCGTTAAGAAACGTAGCATATCTGACGGTTTTTGGAGCACAAGCACATGTGATTTGGATAATAGCACCATTCAATCTCAACCAAGCATCTCCTCTATCAGTACATCAAACCTCACGCTCACTCATAGCAATGTTGGTGCCAGTGTGAGCAACCCTTCTGAATTTGTAAACCATGGCAAGTTTCCCTTCTGAATTCGTAAACCACCGCGGTTAGATCGCGATTGCTCATTCAAACCTGGTCAATATAGCAACAAACCAATTGCTCATTTTCATTGCTTTCAGGTCTTCTTCTCTGGAATCAGAACAGGCTGCAATGGATTGGTGGTAGTAGTAGCAGCAACACAACGGATCAAACTCAACAAAAACGGAAGGCGAAAATCAGGTCAGTTCACCAAATGTCTCTGCCTTTCGAAATTGTAGCCACCCTTTGTAATTTCTTTCGCTAAGTGCTATCTTGTGAGATCCTACATCGGTTGGAGAGGGAAACGAAACATTTCTTATAAGGATGTGGAAACCTCTCCTAAACTAACGTGTTTTAAAATTGTGAGGCTGACGGCGATACGTAACAGGGCCAAAGCGAAAAATATGTGCTAGTCGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACCAGGTAGTGTGCCAGTGAGGACGCTAGACTCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAGCGTTCCTTTTAAGGGTGTGGAAACCTCTCCCAAATAGACGTGTTTTAAAACCGTGAGGCTAACGGCGATACGTAACGGGTCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAATGATATCAGAGCCACGACACCTGGTAGTGTCTCCGCTGGACTTCCAAGAGGGGTGGATTGTGAGATCACACATCGATTGGAGAAGGAAACAAGACATTCCTTATAAGAGTGTGAAAACCTCTCCCAAACAGACACGTTCTATAACCGGGAGGCTGACGACGATACGTAAAGGGCCAAAGTAGACAATATTTACTAGCAATGGGCTTGGGGTGTTACAAATGGTATCAGACATTAGGCGGTGTGCTAGCGAGGACGTTGACTCCCCAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCGTTCCTTTGAAGGGTGTGGAAACCTCTCCCAAACATACGTGTTTTAAAACCATGAGGTTGACGGCGATACGTACCGGGCTAAAGCGGACAATATCTATTAGTAATGGGCCTGGACTGATACAAAAATCTAGAACAAAAGTCTCCGTGGAGATCATACTAAATCTTCATTCCATGCGTGTATATATGCATTTGCTTGCAGTTGGCGTGCAACATATGACAGTTTACTGAGTACAAGACAATCTTTTCCTCATCCAATTCCTTTGTCTGTAAGTCTGGTGTTGCAAGTATTGTCATTTCTTTCTCCACTGGTTTCATTGTAAGCCTAAGAACTTTAAGAACTTGATTTTAACAGGAAATGGTGAAGTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGATTGAAAATGCTTCCTTTATTTTGGATATATTCCTTGAATCCTTGGGAGGAACCTTCTTAGTACAGATTTCCAAAAAGAGAATAAAGGCTGTTTTTCTTCTTCTTCTTACCCTTATCAATCCTCCATTCTTCTTCTGTGTATTCTTCTTTCTTTTTCTTCACTGTTCATATTATCCATAAAAACTCGAAACTCTCCATCACTGCTGCTCAAAGTAAAGTGTGTTATAATGTGAATTTACATGTATTGTTTGGTGACTTTGGATGGGATTTTTTGTGGGTACTCTTCTATGTTTCTGTATGGTATGTTATTGGTTGGATATGAGATAGAGATGGATTCTTATACTATAACGGGATTTAAGTAGCCATCTTCTTTTCTCCCGTGCCCCTAACAAGATGAAGAATCTCCATTTAAGTGGGAAACATGGAGGGAGCGGAGAAAAAGAGAAAGAAAATCATGTGATCTATATCAAGTTCCTCACTGTATCAACTCGACCCAAATCACTCGCTAAAAAGATTCATTTTTTAGTTTTTGATACAAAAAACATCTAGATAGCTTACGTCATTGAATATATGCTATTCACATC

mRNA sequence

ATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCTTTCCACTCCCCACTCAACTTTCCCCTTTTTCCCTCATCCAACTTCCTGCTTTCTTGCCCCAACCCTACTCCATCTCTCGCCTGTTACAGGTTCTTAGCTTCACTCTCGTTTTCCCTGAATCGATGCCCTTCTCTGCGCTTTTGGCTTAATATCAACATGGTTATGCTTAATAGTTCCTTCGCCGCCTGGATCAGCCGCTTGTTCGCCTGCATGGGGGGTTGTTTTGGATGCTGCACTAAACCAACACCTATTATTGCTGTGGATGAACCATCTAAGGGATTAAGAATTCAAGGACGAGTCGTTAAGAAACGTAGCATATCTGACGGTTTTTGGAGCACAAGCACATGTGATTTGGATAATAGCACCATTCAATCTCAACCAAGCATCTCCTCTATCAGTACATCAAACCTCACGCTCACTCATAGCAATGTTGGTGCCAGTGTGAGCAACCCTTCTGAATTTGTAAACCATGGTCTTCTTCTCTGGAATCAGAACAGGCTGCAATGGATTGGTGGTAGTAGTAGCAGCAACACAACGGATCAAACTCAACAAAAACGGAAGGCGAAAATCAGTTGGCGTGCAACATATGACAGTTTACTGAGTACAAGACAATCTTTTCCTCATCCAATTCCTTTGTCTGAAATGGTGAAGTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGATTGAAAATGCTTCCTTTATTTTGGATATATTCCTTGAATCCTTGGGAGGAACCTTCTTAGTACAGATTTCCAAAAAGAGAATAAAGGCTGTTTTTCTTCTTCTTCTTACCCTTATCAATCCTCCATTCTTCTTCTGTGTATTCTTCTTTCTTTTTCTTCACTGTTCATATTATCCATAAAAACTCGAAACTCTCCATCACTGCTGCTCAAAGTAAAGTGTGTTATAATGTGAATTTACATGTATTGTTTGGTGACTTTGGATGGGATTTTTTGTGGGTACTCTTCTATGTTTCTGTATGGTATGTTATTGGTTGGATATGAGATAGAGATGGATTCTTATACTATAACGGGATTTAAGTAGCCATCTTCTTTTCTCCCGTGCCCCTAACAAGATGAAGAATCTCCATTTAAGTGGGAAACATGGAGGGAGCGGAGAAAAAGAGAAAGAAAATCATGTGATCTATATCAAGTTCCTCACTGTATCAACTCGACCCAAATCACTCGCTAAAAAGATTCATTTTTTAGTTTTTGATACAAAAAACATCTAGATAGCTTACGTCATTGAATATATGCTATTCACATC

Coding sequence (CDS)

ATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCTTTCCACTCCCCACTCAACTTTCCCCTTTTTCCCTCATCCAACTTCCTGCTTTCTTGCCCCAACCCTACTCCATCTCTCGCCTGTTACAGGTTCTTAGCTTCACTCTCGTTTTCCCTGAATCGATGCCCTTCTCTGCGCTTTTGGCTTAATATCAACATGGTTATGCTTAATAGTTCCTTCGCCGCCTGGATCAGCCGCTTGTTCGCCTGCATGGGGGGTTGTTTTGGATGCTGCACTAAACCAACACCTATTATTGCTGTGGATGAACCATCTAAGGGATTAAGAATTCAAGGACGAGTCGTTAAGAAACGTAGCATATCTGACGGTTTTTGGAGCACAAGCACATGTGATTTGGATAATAGCACCATTCAATCTCAACCAAGCATCTCCTCTATCAGTACATCAAACCTCACGCTCACTCATAGCAATGTTGGTGCCAGTGTGAGCAACCCTTCTGAATTTGTAAACCATGGTCTTCTTCTCTGGAATCAGAACAGGCTGCAATGGATTGGTGGTAGTAGTAGCAGCAACACAACGGATCAAACTCAACAAAAACGGAAGGCGAAAATCAGTTGGCGTGCAACATATGACAGTTTACTGAGTACAAGACAATCTTTTCCTCATCCAATTCCTTTGTCTGAAATGGTGAAGTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGATTGA

Protein sequence

MDSGGQSHTKGAFHSPLNFPLFPSSNFLLSCPNPTPSLACYRFLASLSFSLNRCPSLRFWLNINMVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD

Homology

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BLAST of CmoCh11G005420.1 vs. ExPASy TrEMBL
Match: A0A6J1I744 (uncharacterized protein LOC111470604 OS=Cucurbita maxima OX=3661 GN=LOC111470604 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.7e-123
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 12  AFHSPLNFPLFPSSNFLLSCPNPTPSLACYRFLASLSFSLNRCPSLRFWLNINMVMLNSS 71
           +FHSPL+FPLFPSSNFLLSCPN TPSLA YRFLASLSFSLNRCPSLRFWLNINMVMLNSS
Sbjct: 21  SFHSPLDFPLFPSSNFLLSCPNSTPSLASYRFLASLSFSLNRCPSLRFWLNINMVMLNSS 80

Query: 72  FAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLD 131
           FAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLD
Sbjct: 81  FAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLD 140

Query: 132 NSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSSNTT 191
           NSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIG SSSS TT
Sbjct: 141 NSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGNSSSSKTT 200

Query: 192 DQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           DQTQ KRKAKISWRATYDSLLSTRQ FPHPIPL+EMVKFLVEVWEQEGLYD
Sbjct: 201 DQTQLKRKAKISWRATYDSLLSTRQCFPHPIPLAEMVKFLVEVWEQEGLYD 251

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BLAST of CmoCh11G005420.1 vs. ExPASy TrEMBL
Match: A0A6J1CTQ5 (uncharacterized protein LOC111014486 OS=Momordica charantia OX=3673 GN=LOC111014486 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.2e-99
Identity = 191/234 (81.62%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 13  FHSPLNFPLFPSSNFLLSCPNPTPSLAC----YRFLASLSFSLNRCPSLRFWLNINMVML 72
           F  PLNFP FP        PN +P L+     YR L    FS NRCP+ RFWLNINMVML
Sbjct: 26  FSLPLNFPFFPHQKL----PNQSPLLSLSNSNYRVLGFHLFSQNRCPAFRFWLNINMVML 85

Query: 73  NSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTC 132
           NSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGR+VKK SISDGFWSTSTC
Sbjct: 86  NSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRIVKKPSISDGFWSTSTC 145

Query: 133 DLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSS 192
           DLDNSTIQSQ SISSISTSNLTL  SNVG S SNPSEFVNHGLLLWNQNRLQW G  SSS
Sbjct: 146 DLDNSTIQSQRSISSISTSNLTLNPSNVGGSTSNPSEFVNHGLLLWNQNRLQWTG--SSS 205

Query: 193 NTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
            TTDQTQQ+RKAKISWRATYDSLL TRQ FPHPIPLSEMV FLVEVWEQEGLYD
Sbjct: 206 KTTDQTQQRRKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD 253

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BLAST of CmoCh11G005420.1 vs. ExPASy TrEMBL
Match: A0A6J1EZS6 (uncharacterized protein LOC111440853 OS=Cucurbita moschata OX=3662 GN=LOC111440853 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.1e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 65  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 124
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 125 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 184
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 120

Query: 185 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD
Sbjct: 121 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 178

[Close]

BLAST of CmoCh11G005420.1 vs. ExPASy TrEMBL
Match: A0A6J1H9M2 (uncharacterized protein LOC111461800 OS=Cucurbita moschata OX=3662 GN=LOC111461800 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 6.8e-83
Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 65  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 124
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKK SISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKPSISDGFWS 60

Query: 125 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 184
           TSTCDLDNSTIQSQ SISSISTSNLT + SNVG SVSNPSE+VNHGLLLWNQ RLQWI G
Sbjct: 61  TSTCDLDNSTIQSQRSISSISTSNLTHSQSNVGGSVSNPSEYVNHGLLLWNQTRLQWI-G 120

Query: 185 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           SS++NTTD+T +++KAKISWRATYDSLL TRQ FPH IPLSEMV FLVEVWEQEGLYD
Sbjct: 121 SSNTNTTDETPERQKAKISWRATYDSLLGTRQPFPHRIPLSEMVNFLVEVWEQEGLYD 177

[Close]

BLAST of CmoCh11G005420.1 vs. ExPASy TrEMBL
Match: A0A6J1JKP7 (uncharacterized protein LOC111485294 OS=Cucurbita maxima OX=3661 GN=LOC111485294 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.2e-82
Identity = 158/178 (88.76%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 65  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 124
           MVMLNSSFAAWISRLFACMGGCFGCCTKPT IIAVDEPSKGLRIQGRVVKK SISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTHIIAVDEPSKGLRIQGRVVKKPSISDGFWS 60

Query: 125 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 184
           TSTCDLDNSTIQSQ SISSISTSNLT + SNVGASVSNPSE+VNHGLLLWNQ RLQWI G
Sbjct: 61  TSTCDLDNSTIQSQRSISSISTSNLTHSQSNVGASVSNPSEYVNHGLLLWNQTRLQWI-G 120

Query: 185 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           SS++NTTD+TQ+++KAKISWRATYD+LL TRQ FPH IPLSEMV FLVEVWEQEGLYD
Sbjct: 121 SSNTNTTDETQERQKAKISWRATYDNLLGTRQPFPHRIPLSEMVNFLVEVWEQEGLYD 177

[Close]

BLAST of CmoCh11G005420.1 vs. NCBI nr
Match: XP_022971935.1 (uncharacterized protein LOC111470604 [Cucurbita maxima])

HSP 1 Score: 449.9 bits (1156), Expect = 1.4e-122
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 12  AFHSPLNFPLFPSSNFLLSCPNPTPSLACYRFLASLSFSLNRCPSLRFWLNINMVMLNSS 71
           +FHSPL+FPLFPSSNFLLSCPN TPSLA YRFLASLSFSLNRCPSLRFWLNINMVMLNSS
Sbjct: 21  SFHSPLDFPLFPSSNFLLSCPNSTPSLASYRFLASLSFSLNRCPSLRFWLNINMVMLNSS 80

Query: 72  FAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLD 131
           FAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLD
Sbjct: 81  FAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLD 140

Query: 132 NSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSSNTT 191
           NSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIG SSSS TT
Sbjct: 141 NSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGNSSSSKTT 200

Query: 192 DQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           DQTQ KRKAKISWRATYDSLLSTRQ FPHPIPL+EMVKFLVEVWEQEGLYD
Sbjct: 201 DQTQLKRKAKISWRATYDSLLSTRQCFPHPIPLAEMVKFLVEVWEQEGLYD 251

[Close]

BLAST of CmoCh11G005420.1 vs. NCBI nr
Match: KAG6587898.1 (hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.0 bits (990), Expect = 2.5e-103
Identity = 191/199 (95.98%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 43  FLASLSFSLNRCPSLRFWLNINMVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEP 102
           FLASLSFSLNRCPSLRFWLNINMVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEP
Sbjct: 238 FLASLSFSLNRCPSLRFWLNINMVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEP 297

Query: 103 SKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSN 162
           SKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPSISSISTSNLTLTHSNVG SVSN
Sbjct: 298 SKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSN 357

Query: 163 PSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPI 222
           PSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPI
Sbjct: 358 PSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPI 417

Query: 223 PLSEMVKFLVEVWEQEGLY 242
           PLSEMVKFLVE  + +G++
Sbjct: 418 PLSEMVKFLVEFGDFDGIF 436

[Close]

BLAST of CmoCh11G005420.1 vs. NCBI nr
Match: XP_022144929.1 (uncharacterized protein LOC111014486 [Momordica charantia])

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-98
Identity = 191/234 (81.62%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 13  FHSPLNFPLFPSSNFLLSCPNPTPSLAC----YRFLASLSFSLNRCPSLRFWLNINMVML 72
           F  PLNFP FP        PN +P L+     YR L    FS NRCP+ RFWLNINMVML
Sbjct: 26  FSLPLNFPFFPHQKL----PNQSPLLSLSNSNYRVLGFHLFSQNRCPAFRFWLNINMVML 85

Query: 73  NSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTC 132
           NSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGR+VKK SISDGFWSTSTC
Sbjct: 86  NSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRIVKKPSISDGFWSTSTC 145

Query: 133 DLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSS 192
           DLDNSTIQSQ SISSISTSNLTL  SNVG S SNPSEFVNHGLLLWNQNRLQW G  SSS
Sbjct: 146 DLDNSTIQSQRSISSISTSNLTLNPSNVGGSTSNPSEFVNHGLLLWNQNRLQWTG--SSS 205

Query: 193 NTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
            TTDQTQQ+RKAKISWRATYDSLL TRQ FPHPIPLSEMV FLVEVWEQEGLYD
Sbjct: 206 KTTDQTQQRRKAKISWRATYDSLLGTRQPFPHPIPLSEMVNFLVEVWEQEGLYD 253

[Close]

BLAST of CmoCh11G005420.1 vs. NCBI nr
Match: XP_022933439.1 (uncharacterized protein LOC111440853 [Cucurbita moschata])

HSP 1 Score: 360.9 bits (925), Expect = 8.5e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 65  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 124
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 125 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 184
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 120

Query: 185 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD
Sbjct: 121 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 178

[Close]

BLAST of CmoCh11G005420.1 vs. NCBI nr
Match: XP_023531005.1 (uncharacterized protein LOC111793390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-93
Identity = 173/178 (97.19%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 65  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 124
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 125 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGG 184
           TSTCDLDNSTIQSQPSISSISTS LTLTHSNVG SVSNPSEFVNHGLLLWNQNRLQWIGG
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSTLTLTHSNVGGSVSNPSEFVNHGLLLWNQNRLQWIGG 120

Query: 185 SSSSNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
            SSS TTDQTQQK+KAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD
Sbjct: 121 GSSSKTTDQTQQKQKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 178

[Close]

BLAST of CmoCh11G005420.1 vs. TAIR 10
Match: AT5G25360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-56
Identity = 108/175 (61.71%), Postives = 130/175 (74.29%), Query Frame = 0


Query: 68  LNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTST 127
           L     +WI +LF CMGGCFGCC KP  I+AVDEPSKGLRIQGR+VKK S+S+ FWSTST
Sbjct: 3   LREIIPSWIYQLFGCMGGCFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTST 62

Query: 128 CDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSS 187
           C++DNST+QSQ S+SSIS +N T T     AS SNP+EFVNHGL LWNQ R QW+    +
Sbjct: 63  CEMDNSTLQSQRSMSSISFTNNTST----SASTSNPTEFVNHGLNLWNQTRQQWL----A 122

Query: 188 SNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           + T+ +  + R+  ISW ATY+SLL   + F  PIPL EMV FLV+VWEQEGLYD
Sbjct: 123 NGTSQKKAKVREPTISWNATYESLLGMNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169

[Close]

BLAST of CmoCh11G005420.1 vs. TAIR 10
Match: AT5G25360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). )

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-56
Identity = 108/175 (61.71%), Postives = 130/175 (74.29%), Query Frame = 0


Query: 68  LNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTST 127
           L     +WI +LF CMGGCFGCC KP  I+AVDEPSKGLRIQGR+VKK S+S+ FWSTST
Sbjct: 3   LREIIPSWIYQLFGCMGGCFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTST 62

Query: 128 CDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSS 187
           C++DNST+QSQ S+SSIS +N T T     AS SNP+EFVNHGL LWNQ R QW+    +
Sbjct: 63  CEMDNSTLQSQRSMSSISFTNNTST----SASTSNPTEFVNHGLNLWNQTRQQWL----A 122

Query: 188 SNTTDQTQQKRKAKISWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           + T+ +  + R+  ISW ATY+SLL   + F  PIPL EMV FLV+VWEQEGLYD
Sbjct: 123 NGTSQKKAKVREPTISWNATYESLLGMNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169

[Close]

BLAST of CmoCh11G005420.1 vs. TAIR 10
Match: AT4G32342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 151.4 bits (381), Expect = 9.5e-37
Identity = 86/159 (54.09%), Postives = 100/159 (62.89%), Query Frame = 0


Query: 86  CFGCCTKPTP-IIAVDEPSKGLRIQGRVVKKRSI-SDGFWSTSTCDLD-NSTIQSQPSIS 145
           CFGCC +    ++ VDEPSKGL+IQG++VKK S  SD FWSTSTCD+D N TIQSQ S  
Sbjct: 17  CFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDMDHNITIQSQSSNP 76

Query: 146 SISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKAKI 205
                           S SN +EFVNHGL+LWN  R QW         T Q     +  I
Sbjct: 77  PFDPQ----------CSTSNSTEFVNHGLILWNHTRQQW-----RECLTRQQCLVPEPAI 136

Query: 206 SWRATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLY 242
           SW +TYDSLLST + FP PIPL EMV FLV+VWE+EGLY
Sbjct: 137 SWNSTYDSLLSTNKLFPQPIPLKEMVHFLVDVWEEEGLY 160

[Close]

BLAST of CmoCh11G005420.1 vs. TAIR 10
Match: AT1G15350.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34
Identity = 80/163 (49.08%), Postives = 100/163 (61.35%), Query Frame = 0


Query: 83  MGGCFGCCT--KPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPS 142
           MGGC GC    + T     D PS  +    R  KK S+S+ FWSTST D+DN T  SQ S
Sbjct: 1   MGGCVGCYREHRSTAASLKDPPSNSI---ARPCKKPSVSEDFWSTSTVDMDNITFPSQGS 60

Query: 143 ISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKA 202
           +SS   SN T    +   + + P E+VN GLLLWNQ R +W+G    +N  D  Q    A
Sbjct: 61  LSS---SNQTFDSQSAARNSNAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQ---GA 120

Query: 203 KISWR-ATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           K++W  ATYDSLL + + FP PIPL+EMV FLV++WEQEGLYD
Sbjct: 121 KLNWNTATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 154

[Close]

BLAST of CmoCh11G005420.1 vs. TAIR 10
Match: AT1G15350.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34
Identity = 80/163 (49.08%), Postives = 100/163 (61.35%), Query Frame = 0


Query: 83  MGGCFGCCT--KPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPS 142
           MGGC GC    + T     D PS  +    R  KK S+S+ FWSTST D+DN T  SQ S
Sbjct: 1   MGGCVGCYREHRSTAASLKDPPSNSI---ARPCKKPSVSEDFWSTSTVDMDNITFPSQGS 60

Query: 143 ISSISTSNLTLTHSNVGASVSNPSEFVNHGLLLWNQNRLQWIGGSSSSNTTDQTQQKRKA 202
           +SS   SN T    +   + + P E+VN GLLLWNQ R +W+G    +N  D  Q    A
Sbjct: 61  LSS---SNQTFDSQSAARNSNAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQ---GA 120

Query: 203 KISWR-ATYDSLLSTRQSFPHPIPLSEMVKFLVEVWEQEGLYD 243
           K++W  ATYDSLL + + FP PIPL+EMV FLV++WEQEGLYD
Sbjct: 121 KLNWNTATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 154

The following BLAST results are available for this feature:

BLAST of CmoCh11G005420.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G005420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I744	6.7e-123	96.10	uncharacterized protein LOC111470604 OS=Cucurbita maxima OX=3661 GN=LOC111470604...	[more]
A0A6J1CTQ5	5.2e-99	81.62	uncharacterized protein LOC111014486 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1EZS6	4.1e-96	100.00	uncharacterized protein LOC111440853 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1H9M2	6.8e-83	88.76	uncharacterized protein LOC111461800 OS=Cucurbita moschata OX=3662 GN=LOC1114618...	[more]
A0A6J1JKP7	1.2e-82	88.76	uncharacterized protein LOC111485294 OS=Cucurbita maxima OX=3661 GN=LOC111485294...	[more]

BLAST of CmoCh11G005420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971935.1	1.4e-122	96.10	uncharacterized protein LOC111470604 [Cucurbita maxima]	[more]
KAG6587898.1	2.5e-103	95.98	hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022144929.1	1.1e-98	81.62	uncharacterized protein LOC111014486 [Momordica charantia]	[more]
XP_022933439.1	8.5e-96	100.00	uncharacterized protein LOC111440853 [Cucurbita moschata]	[more]
XP_023531005.1	5.1e-93	97.19	uncharacterized protein LOC111793390 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh11G005420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25360.1	3.1e-56	61.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G25360.2	3.1e-56	61.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G32342.1	9.5e-37	54.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G15350.2	3.4e-34	49.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15350.1	3.4e-34	49.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025124	Domain of unknown function DUF4050	PFAM	PF13259	DUF4050	coord: 127..197 e-value: 4.6E-9 score: 36.9 coord: 201..242 e-value: 1.4E-12 score: 48.4
None	No IPR available	PANTHER	PTHR33373	OS07G0479600 PROTEIN	coord: 65..242
None	No IPR available	PANTHER	PTHR33373:SF13	DUF4050 FAMILY PROTEIN	coord: 65..242

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G005420	CmoCh11G005420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005420.1:exon:3487	CmoCh11G005420.1:exon:3487	exon
CmoCh11G005420.1:exon:3486	CmoCh11G005420.1:exon:3486	exon
CmoCh11G005420.1:exon:3485	CmoCh11G005420.1:exon:3485	exon
CmoCh11G005420.1:exon:3484	CmoCh11G005420.1:exon:3484	exon
CmoCh11G005420.1:exon:3483	CmoCh11G005420.1:exon:3483	exon
CmoCh11G005420.1:exon:3482	CmoCh11G005420.1:exon:3482	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005420.1:three_prime_utr	CmoCh11G005420.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005420.1:cds	CmoCh11G005420.1:cds_6	CDS
CmoCh11G005420.1:cds	CmoCh11G005420.1:cds_5	CDS
CmoCh11G005420.1:cds	CmoCh11G005420.1:cds_4	CDS
CmoCh11G005420.1:cds	CmoCh11G005420.1:cds_3	CDS
CmoCh11G005420.1:cds	CmoCh11G005420.1:cds_2	CDS
CmoCh11G005420.1:cds	CmoCh11G005420.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005420.1	CmoCh11G005420.1-protein	polypeptide