CmoCh11G005270.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005270.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	Cmo_Chr11: 2573078 .. 2574469 (-)
Sequence length	1124
RNA-Seq Expression	CmoCh11G005270.1
Synteny	CmoCh11G005270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGGTAACCTTTTCCCCCCTTTGTATGGATGCATACATCTTGCAAATCTTGCTGTGTTGGACTACGCATTTCTGTGAATAATCTGTGTGTATTTTAAATGTTTTTGATATTGATTTGAGATTTATTTTCCAAAACGTTTGGATGTTCTGCCATCGGTTGTTCTTTGGTAATGTGAATGCTTAGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGTACAGTGTTGGGGATTTGGACTACTGAACCGCGCATATTAATCTAATCTGTTTGATTGAAAATGTGTTCAATTGTTTAATTAGTTGGTGCAAATGCAGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAAACGCTTTGGAATCAGGGATGGTGATCTGGTATTCCCCTCGAATGCTTAACCTGCCTTAATTTATAGTTTTCTCTGTTTGAGTTCTGTCTTGTATTTGATCTTGTAATTAATGAGTTCTATGTTCCCCCATGCAGCTACATTTTGTGAACCGTGTAGCTTAATTTTCGCCAAGAATCAGTGGATTTGAGATGGCCCAAAAGAATGAATGGATAGAGTAATATAGGCAGGCTGGTTGAACGGCTTCTGGTATAAACTTGTCGGAAGTTTTTGGGTGTGAATTATTGTGAAGTGGTCAGATGGGTCTTTTTTTTTTCTTTTTTTTTCTTGATTTTTTTAACTTTCCTGATGCTAAATTTGAAGCCTTGGTTTATATATATATAACAAGATGAACTACATTTCGTTTGTGCCACATAAGACTTCACTTTCCTTTCGTCCAATCCAAAAATGAAGTCCATTAGTTCAGCCTCTAAGGTATTCAAATTGCTCTAAGAAGAGAATAGATGGAAGAATGGCAATGAAGATATGCCCAAGTGATCTGACATTGATACATTTTGCAGGAGAATCTGAGAGGATGAATGCTATTATTGCCCGATCAACTTGATGTTATGGGGAGTGCAAGCTCTACAGTGTGTGAAGCTATGAACTCTGAAGATTTTCAGCTGAGATTATATGTATCTGTGGCCTTAATTTATGCACTTAGAAAATTATTTTGTCTTGTAAGTTGAGACTTGGAAAGAATTCATAAATTTTAATGCTTTGATAGTTTCTTTATTAAACAAATAGTTGCCTA

mRNA sequence

ATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGGTAACCTTTTCCCCCCTTTGTATGGATGCATACATCTTGCAAATCTTGCTGTGTTGGACTACGCATTTCTATTTATTTTCCAAAACGTTTGGATGTTCTGCCATCGGTTGTTCTTTGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAAACGCTTTGGAATCAGGGATGGTGATCTGCTACATTTTGTGAACCGTGTAGCTTAATTTTCGCCAAGAATCAGTGGATTTGAGATGGCCCAAAAGAATGAATGGATAGAGTAATATAGGCAGGCTGGTTGAACGGCTTCTGGTATAAACTTGTCGGAAGTTTTTGGGTGTGAATTATTGTGAAGTGGTCAGATGGGTCTTTTTTTTTTCTTTTTTTTTCTTGATTTTTTTAACTTTCCTGATGCTAAATTTGAAGCCTTGGTTTATATATATATAACAAGATGAACTACATTTCGTTTGTGCCACATAAGACTTCACTTTCCTTTCGTCCAATCCAAAAATGAAGTCCATTAGTTCAGCCTCTAAGGTATTCAAATTGCTCTAAGAAGAGAATAGATGGAAGAATGGCAATGAAGATATGCCCAAGTGATCTGACATTGATACATTTTGCAGGAGAATCTGAGAGGATGAATGCTATTATTGCCCGATCAACTTGATGTTATGGGGAGTGCAAGCTCTACAGTGTGTGAAGCTATGAACTCTGAAGATTTTCAGCTGAGATTATATGTATCTGTGGCCTTAATTTATGCACTTAGAAAATTATTTTGTCTTGTAAGTTGAGACTTGGAAAGAATTCATAAATTTTAATGCTTTGATAGTTTCTTTATTAAACAAATAGTTGCCTA

Coding sequence (CDS)

ATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGGTAACCTTTTCCCCCCTTTGTATGGATGCATACATCTTGCAAATCTTGCTGTGTTGGACTACGCATTTCTATTTATTTTCCAAAACGTTTGGATGTTCTGCCATCGGTTGTTCTTTGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAAACGCTTTGGAATCAGGGATGGTGATCTGCTACATTTTGTGAACCGTGTAGCTTAA

Protein sequence

MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

Homology

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BLAST of CmoCh11G005270.1 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.2e-04
Identity = 23/73 (31.51%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 89  EVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIK 148
           +V V   A++  L+  ++     M   N     ISW HVWS+FCL   + KL+D+ + ++
Sbjct: 65  DVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQ 124

Query: 149 RFGIRDGDLLHFV 161
             GIR+   + F+
Sbjct: 125 DVGIRNNSQVTFM 137

[Close]

BLAST of CmoCh11G005270.1 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.5e-61
Identity = 125/164 (76.22%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 60

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGMSMNREDVK
Sbjct: 61  ---------------------------FEVQVARKASVAKLREAVESVFCGMSMNREDVK 120

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Sbjct: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 125

[Close]

BLAST of CmoCh11G005270.1 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.5e-60
Identity = 123/164 (75.00%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 60

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGM MNREDVK
Sbjct: 61  ---------------------------FEVQVARKASVAKLREAVESVFCGMLMNREDVK 120

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR+A
Sbjct: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRIA 125

[Close]

BLAST of CmoCh11G005270.1 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.5e-44
Identity = 95/160 (59.38%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSS            
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSS------------ 60

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQV R A+VA +R+AVESVFC MSMN+ED  
Sbjct: 61  ---------------------------FEVQVERTATVAAVRDAVESVFCEMSMNKEDFN 120

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV 161
           ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHFV
Sbjct: 121 ISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 121

[Close]

BLAST of CmoCh11G005270.1 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.4e-44
Identity = 94/160 (58.75%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           M +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSS            
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSS------------ 63

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQV R A+VA +R+AVESVFC MSMN+ED  
Sbjct: 64  ---------------------------FEVQVERTATVAAVRDAVESVFCEMSMNKEDFN 123

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV 161
           ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHFV
Sbjct: 124 ISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 124

[Close]

BLAST of CmoCh11G005270.1 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.4e-44
Identity = 94/160 (58.75%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           M +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSS            
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSS------------ 63

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQV R A+VA +R+AVESVFC MSMN+ED  
Sbjct: 64  ---------------------------FEVQVERTATVAAVRDAVESVFCEMSMNKEDFN 123

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV 161
           ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHFV
Sbjct: 124 ISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 124

[Close]

BLAST of CmoCh11G005270.1 vs. NCBI nr
Match: KAG7021772.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 125/164 (76.22%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 64

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGMSMNREDVK
Sbjct: 65  ---------------------------FEVQVARKASVAKLREAVESVFCGMSMNREDVK 124

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Sbjct: 125 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 129

[Close]

BLAST of CmoCh11G005270.1 vs. NCBI nr
Match: XP_022927502.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata] >XP_022927511.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 125/164 (76.22%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 60

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGMSMNREDVK
Sbjct: 61  ---------------------------FEVQVARKASVAKLREAVESVFCGMSMNREDVK 120

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Sbjct: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 125

[Close]

BLAST of CmoCh11G005270.1 vs. NCBI nr
Match: XP_022973901.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 123/164 (75.00%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 60

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGM MNREDVK
Sbjct: 61  ---------------------------FEVQVARKASVAKLREAVESVFCGMLMNREDVK 120

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR+A
Sbjct: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRIA 125

[Close]

BLAST of CmoCh11G005270.1 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 124/164 (75.61%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           M RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 80

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGMSMNREDVK
Sbjct: 81  ---------------------------FEVQVARKASVAKLREAVESVFCGMSMNREDVK 140

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Sbjct: 141 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 145

[Close]

BLAST of CmoCh11G005270.1 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 124/164 (75.61%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCI 60
           M RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS            
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS------------ 60

Query: 61  HLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVK 120
                                      FEVQVARKASVAKLREAVESVFCGMSMNREDVK
Sbjct: 61  ---------------------------FEVQVARKASVAKLREAVESVFCGMSMNREDVK 120

Query: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 165
           ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Sbjct: 121 ISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 125

[Close]

BLAST of CmoCh11G005270.1 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 24  RRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFC 83
           RRS  Y ++P   + L+VLKLDGSSFG                                 
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFG--------------------------------- 84

Query: 84  HRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEK 143
                 +QV + A+V +L+ AVE+ F  + ++    KISWPHVW  FCL Y+  +LI+E 
Sbjct: 85  ------IQVLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQFCLSYEDKRLINES 125

Query: 144 SRIKRFGIRDGDLLHFVNRVA 165
             +  FGI+DGD L F+  ++
Sbjct: 145 EYLTEFGIKDGDQLRFIRHIS 125

[Close]

BLAST of CmoCh11G005270.1 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 88  FEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIK 147
           F+V+VA+  SVA+L+ AVE VF    +    + ISW HVW HFCLCY+  +L+++K+ I+
Sbjct: 65  FDVEVAKDCSVAELKRAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIR 124

Query: 148 RFGIRDGDLLHFVNRVA 165
             G+ DGD LHFV  ++
Sbjct: 125 YLGLNDGDQLHFVRHLS 140

[Close]

BLAST of CmoCh11G005270.1 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-15
Identity = 47/141 (33.33%), Postives = 65/141 (46.10%), Query Frame = 0


Query: 24  RRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFC 83
           RR+  Y +LP+  + LSVLKLDGSS                                   
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSS----------------------------------- 65

Query: 84  HRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEK 143
               F+V V   A+V  L+ A+E+ F  +   +   KISW HVW HFCLC+   KLI + 
Sbjct: 66  ----FDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKISWSHVWGHFCLCFGGQKLITDT 106

Query: 144 SRIKRFGIRDGDLLHFVNRVA 165
             I  +G++DGD + F N V+
Sbjct: 126 DCIGNYGMKDGDEVRFKNHVS 106

[Close]

BLAST of CmoCh11G005270.1 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-13
Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 32  LPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQ 91
           +P   + L+VLKLDGSSF                                          
Sbjct: 1   MPEEPIKLTVLKLDGSSF------------------------------------------ 60

Query: 92  VARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGI 151
           V + A+V +L+ AVE+ F  + ++    KISWPHVW  FCL Y+  +LI+E   +  FGI
Sbjct: 61  VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQFCLSYEDKRLINESEYLTEFGI 90

Query: 152 RDGDLLHFVNRVA 165
           +DGD L F+  ++
Sbjct: 121 KDGDQLRFIRHIS 90

[Close]

BLAST of CmoCh11G005270.1 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.5e-05
Identity = 23/73 (31.51%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 89  EVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIK 148
           +V V   A++  L+  ++     M   N     ISW HVWS+FCL   + KL+D+ + ++
Sbjct: 65  DVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQ 124

Query: 149 RFGIRDGDLLHFV 161
             GIR+   + F+
Sbjct: 125 DVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of CmoCh11G005270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	9.2e-04	31.51	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of CmoCh11G005270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHC7	8.5e-61	76.22	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A6J1I9W9	5.5e-60	75.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]
A0A0A0LT94	5.5e-44	59.38	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	9.4e-44	58.75	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	9.4e-44	58.75	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]

BLAST of CmoCh11G005270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021772.1	1.7e-60	76.22	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_022927502.1	1.7e-60	76.22	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]...	[more]
XP_022973901.1	1.1e-59	75.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]	[more]
XP_023531556.1	1.5e-59	75.61	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_023531557.1	1.5e-59	75.61	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]

BLAST of CmoCh11G005270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	1.9e-17	34.04	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	1.6e-16	46.75	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	5.3e-15	33.33	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	5.0e-13	31.58	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	6.5e-05	31.51	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 83..164 e-value: 3.7E-24 score: 86.4
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 7..163
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 87..163 e-value: 4.5E-20 score: 71.5
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 88..162 e-value: 3.71355E-28 score: 98.3592
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 7..163
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 88..163

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G005270	CmoCh11G005270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005270.1:exon:3455	CmoCh11G005270.1:exon:3455	exon
CmoCh11G005270.1:exon:3454	CmoCh11G005270.1:exon:3454	exon
CmoCh11G005270.1:exon:3453	CmoCh11G005270.1:exon:3453	exon
CmoCh11G005270.1:exon:3452	CmoCh11G005270.1:exon:3452	exon
CmoCh11G005270.1:exon:3451	CmoCh11G005270.1:exon:3451	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005270.1:three_prime_utr	CmoCh11G005270.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005270.1:cds	CmoCh11G005270.1:cds_5	CDS
CmoCh11G005270.1:cds	CmoCh11G005270.1:cds_4	CDS
CmoCh11G005270.1:cds	CmoCh11G005270.1:cds_3	CDS
CmoCh11G005270.1:cds	CmoCh11G005270.1:cds_2	CDS
CmoCh11G005270.1:cds	CmoCh11G005270.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G005270.1	CmoCh11G005270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex