CmoCh09G009330.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G009330.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Vascular-related unknown protein 4
Location	Cmo_Chr09: 4878210 .. 4879757 (-)
Sequence length	494
RNA-Seq Expression	CmoCh09G009330.1
Synteny	CmoCh09G009330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAGAAAGCTCCGCCCATACTTCCGTCTGCCACGGCGGCGATCAGTCGTCGGAGGAGAGTGGTTGGACCATCTACTTTGAAGATTTCCTCAACAACCACCACCCTACTAATCAACCACCCACCTCCTTCTCTTCTTTTCCTCTCTCTCCCGATCAAAGCTACCCTATCGCCGACGCTGCTTCCTCCGTCGTGGACCACAAACTACTCGAAAACCACGACGGAGCCGCCATGGATCCCGGGTTTAGCTGCAAGGATCATATCAACTTTTTCAAGAAGAGGAAGATGATCTATGAGGTGTTCGTTGATGATGAAGCTTTGGAGGACACCGCTAGCTCTCCGGTTAATAGTCCCAAGGTGTGTGTCACTATCCTATACCTTCTCTAGCTTTATATTTTCATCATTTGTGTAACGGCTCAAGCCCACCACTAGTAGATATTGTCCTCTTTGAGCTTTCTCTTATGAGCTTTCCATCAAGGCTTTAAAACGCGTCTGTTAGGAAAAGGTTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCTCAACCAATGTGGGACATCACAATTTGCATCTCTCAGGATGGATAAGGACTTTCAAAAGCGATAGGAACAGTTGAGAACAGTAGCAGATATTGTCCTCTTTGAGCTTTCCCTTACGAGCTTCCCCTCTCGGCTTTAAAACGCGTCTGTTAGGGGAAGGTTTCCACACCTTTATAAAGCGTGTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATTTGCATCTCTCGAGATAGATAAAGACTTTCAAAAGCAATAGAAACAATTGAGAACAGAGTGAACGAAGCATTCGGGTTTAATCCTTCGAGTTCAAGGAGGGAGTTGGTAGGCTTTGACTATTAAGATTAGGAAGAACTCTTTCACTCTTGTCAGTGTTTTCACAAGCCAAGCCGAAATTCCTCCTTACACATATGGAAATCAATCGTTACACAGCTCTAGACATTCTAAGCAAACAACACTTCATGATTTCACATTCGAACTTCTACAATATTATTTCTCGTCCATTTTGAGTCAAACTCTTAAACTAAGAAGAATATTAACATCCCGATTCAGTCTTACATAAACTTTTGAGTTCAGTGATAGTTTAACGATCTCGTGACGGGTTTTTTGTGACGGGTTTTTTGTGACGGGTTTTCTTGAACATGAAAAACGTGCAGGTCTGTGATTCGAACTACTTCAGTAAAAACCCGAGGCACAAAGGGAAACTGATAACTCCTCAGGTAAATACACATAGAAGTGGAAAGGAGAGAACTTTACCTTAAAAGGTTCAAACTTTTTCATTAGGGTTTTTAATTTTTAATTTTAATTATTATTATTATTATTATTATTATTATTATTTATTATGAATAAAAAAACATTTTTTGTGGGCAGGTACATGAGAGAAGAGAAATAGGTGATTTAATTGGAATTGGCAGTGAGTACACAGAATTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTTTCTATGATACTTAATTATATGGATCAATAATTCCTCTCTCT

mRNA sequence

ATGGCCAAAGAAAGCTCCGCCCATACTTCCGTCTGCCACGGCGGCGATCAGTCGTCGGAGGAGAGTGGTTGGACCATCTACTTTGAAGATTTCCTCAACAACCACCACCCTACTAATCAACCACCCACCTCCTTCTCTTCTTTTCCTCTCTCTCCCGATCAAAGCTACCCTATCGCCGACGCTGCTTCCTCCGTCGTGGACCACAAACTACTCGAAAACCACGACGGAGCCGCCATGGATCCCGGGTTTAGCTGCAAGGATCATATCAACTTTTTCAAGAAGAGGAAGATGATCTATGAGGTCTGTGATTCGAACTACTTCAGTAAAAACCCGAGGCACAAAGGGAAACTGATAACTCCTCAGGTACATGAGAGAAGAGAAATAGGTGATTTAATTGGAATTGGCAGTGAGTACACAGAATTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTTTCTATGATACTTAATTATATGGATCAATAATTCCTCTCTCT

Coding sequence (CDS)

ATGGCCAAAGAAAGCTCCGCCCATACTTCCGTCTGCCACGGCGGCGATCAGTCGTCGGAGGAGAGTGGTTGGACCATCTACTTTGAAGATTTCCTCAACAACCACCACCCTACTAATCAACCACCCACCTCCTTCTCTTCTTTTCCTCTCTCTCCCGATCAAAGCTACCCTATCGCCGACGCTGCTTCCTCCGTCGTGGACCACAAACTACTCGAAAACCACGACGGAGCCGCCATGGATCCCGGGTTTAGCTGCAAGGATCATATCAACTTTTTCAAGAAGAGGAAGATGATCTATGAGGTCTGTGATTCGAACTACTTCAGTAAAAACCCGAGGCACAAAGGGAAACTGATAACTCCTCAGGTACATGAGAGAAGAGAAATAGGTGATTTAATTGGAATTGGCAGTGAGTACACAGAATTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTTTCTATGATACTTAATTATATGGATCAATAA

Protein sequence

MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIADAASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYEVCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ

Homology

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy Swiss-Prot
Match: Q5BPG5 (Vascular-related unknown protein 4 OS=Arabidopsis thaliana OX=3702 GN=VUP4 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 0


Query: 6   SAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIADAASSV 65
           S H +     DQ+ EES WT+YFEDF            S S   +    S  ++DAAS V
Sbjct: 12  SKHETAMFTDDQNPEESSWTMYFEDFFE---------ASSSIVDVGDFSSSSVSDAASFV 71

Query: 66  VDHKLL--ENHDGAAMDPGFSCKDHINFFKKRKM------------IYEVCDSNYFSKNP 125
              K L     +G+ +D   +    I F +   +            +Y +   N    N 
Sbjct: 72  ATKKTLNVSKQEGSNLDIKRTRNREIPFGRHHDLEDTASSPSGSPNVYSM--MNLQDNNT 131

Query: 126 RHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYM 159
           RH G ++     + + +  +   G    +LKK+GLCLVP SM+ N++
Sbjct: 132 RHGGGIVG---DDEKRVSAVPNQGGLPIDLKKKGLCLVPLSMVTNFL 164

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy Swiss-Prot
Match: Q9LSZ3 (Vascular-related unknown protein 1 OS=Arabidopsis thaliana OX=3702 GN=VUP1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-04
Identity = 44/190 (23.16%), Postives = 68/190 (35.79%), Query Frame = 0


Query: 7   AHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIADAASSVV 66
           AH    HGGD   EESGWT Y +DF N +  T+               SY +   ++S+V
Sbjct: 24  AHDHDSHGGDH-QEESGWTTYLDDFSNQYRTTHHEENDHQD-----KSSYSLLATSTSLV 83

Query: 67  DHKLLENHDGAAMDPGFSCKDHINFFKKRKM-----IYEVCDSNYFSKNPRHKGKLITP- 126
                    G +    F  K      + +K+     + +   S   S    H   + TP 
Sbjct: 84  SDAATHAFSGKSFPVNFPAKLKFGRGRTKKICEDDSLEDTASSPVNSPKVSHFEHIQTPP 143

Query: 127 -----QVHERREIGDLIGIG----------------------------SEYTELKKRGLC 158
                 V     +G++ G+G                            +   +L+ RGLC
Sbjct: 144 RKIEDYVSSSFVMGNIRGMGDHQIQIQEGGEQKVTLMRNLIDGNNNNNNNNMDLRSRGLC 203

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A6J1FG95 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85
Identity = 160/180 (88.89%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD
Sbjct: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYEVFVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 180

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A6J1IHA8 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.3e-79
Identity = 150/180 (83.33%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTS+ HGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSS+P SPDQSYP+AD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLL NHDGAAM PGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQV ERR+IGDLIGIGSEYTELKKRGLCLVPFSMI+NYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDIGDLIGIGSEYTELKKRGLCLVPFSMIINYMDQ 180

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A6J1IG62 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.7e-70
Identity = 139/180 (77.22%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTS+ HGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSS+P SPDQSYP+AD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLL NHDGAAM PGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQV ERR+I           ELKKRGLCLVPFSMI+NYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDI-----------ELKKRGLCLVPFSMIINYMDQ 169

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A6J1FA17 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.6e-62
Identity = 122/146 (83.56%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD
Sbjct: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYEVFVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERR 127
           VCDSNYFSKNPRHKGKLITPQ+ E +
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQMREEK 146

[Close]

BLAST of CmoCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A6J1IMM8 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 115/144 (79.86%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTS+ HGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSS+P SPDQSYP+AD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLL NHDGAAM PGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHE 125
           VCDSNYFSKNPRHKGKLITPQ+ E
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQMRE 144

[Close]

BLAST of CmoCh09G009330.1 vs. NCBI nr
Match: XP_022937320.1 (vascular-related unknown protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 325.1 bits (832), Expect = 3.4e-85
Identity = 160/180 (88.89%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD
Sbjct: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYEVFVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 180

[Close]

BLAST of CmoCh09G009330.1 vs. NCBI nr
Match: XP_022976591.1 (vascular-related unknown protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 4.8e-79
Identity = 150/180 (83.33%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTS+ HGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSS+P SPDQSYP+AD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLL NHDGAAM PGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQV ERR+IGDLIGIGSEYTELKKRGLCLVPFSMI+NYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDIGDLIGIGSEYTELKKRGLCLVPFSMIINYMDQ 180

[Close]

BLAST of CmoCh09G009330.1 vs. NCBI nr
Match: XP_023534855.1 (vascular-related unknown protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 2.1e-71
Identity = 142/180 (78.89%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTSV HGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSS+PLSPDQSYP+AD
Sbjct: 1   MAKESSAHTSVYHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPLSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLL NHDGAAMDPGFSCKDHIN FKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLGNHDGAAMDPGFSCKDHINLFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQV ERRE           TELKKRGLCLVPFSMI+NYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRE-----------TELKKRGLCLVPFSMIINYMDQ 169

[Close]

BLAST of CmoCh09G009330.1 vs. NCBI nr
Match: KAG7024902.1 (hypothetical protein SDJN02_13722, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 136/160 (85.00%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYP+AD
Sbjct: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYEVCDSNYFSKNPRHKGKLITP 120
           AASSVVDHKLLENHDGAAMDPGFSCKDHIN FKKRKMIYE+                   
Sbjct: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINLFKKRKMIYELL------------------ 120

Query: 121 QVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
            VHERRE GDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ
Sbjct: 121 -VHERRETGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 141

[Close]

BLAST of CmoCh09G009330.1 vs. NCBI nr
Match: XP_022976592.1 (vascular-related unknown protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 139/180 (77.22%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MAKESSAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIAD 60
           MAKESSAHTS+ HGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSS+P SPDQSYP+AD
Sbjct: 1   MAKESSAHTSLFHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSYPPSPDQSYPVAD 60

Query: 61  AASSVVDHKLLENHDGAAMDPGFSCKDHINFFKKRKMIYE-------------------- 120
           AASSVVDHKLL NHDGAAM PGFSCKDHINFFKKRKMIYE                    
Sbjct: 61  AASSVVDHKLLGNHDGAAMGPGFSCKDHINFFKKRKMIYELLVDDEALEDTASSPVNSPK 120

Query: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYMDQ 161
           VCDSNYFSKNPRHKGKLITPQV ERR+I           ELKKRGLCLVPFSMI+NYMDQ
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDI-----------ELKKRGLCLVPFSMIINYMDQ 169

[Close]

BLAST of CmoCh09G009330.1 vs. TAIR 10
Match: AT5G54790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 9.5e-09
Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 0


Query: 6   SAHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIADAASSV 65
           S H +     DQ+ EES WT+YFEDF            S S   +    S  ++DAAS V
Sbjct: 12  SKHETAMFTDDQNPEESSWTMYFEDFFE---------ASSSIVDVGDFSSSSVSDAASFV 71

Query: 66  VDHKLL--ENHDGAAMDPGFSCKDHINFFKKRKM------------IYEVCDSNYFSKNP 125
              K L     +G+ +D   +    I F +   +            +Y +   N    N 
Sbjct: 72  ATKKTLNVSKQEGSNLDIKRTRNREIPFGRHHDLEDTASSPSGSPNVYSM--MNLQDNNT 131

Query: 126 RHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYM 159
           RH G ++     + + +  +   G    +LKK+GLCLVP SM+ N++
Sbjct: 132 RHGGGIVG---DDEKRVSAVPNQGGLPIDLKKKGLCLVPLSMVTNFL 164

[Close]

BLAST of CmoCh09G009330.1 vs. TAIR 10
Match: AT3G21710.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 4.9e-05
Identity = 44/190 (23.16%), Postives = 68/190 (35.79%), Query Frame = 0


Query: 7   AHTSVCHGGDQSSEESGWTIYFEDFLNNHHPTNQPPTSFSSFPLSPDQSYPIADAASSVV 66
           AH    HGGD   EESGWT Y +DF N +  T+               SY +   ++S+V
Sbjct: 24  AHDHDSHGGDH-QEESGWTTYLDDFSNQYRTTHHEENDHQD-----KSSYSLLATSTSLV 83

Query: 67  DHKLLENHDGAAMDPGFSCKDHINFFKKRKM-----IYEVCDSNYFSKNPRHKGKLITP- 126
                    G +    F  K      + +K+     + +   S   S    H   + TP 
Sbjct: 84  SDAATHAFSGKSFPVNFPAKLKFGRGRTKKICEDDSLEDTASSPVNSPKVSHFEHIQTPP 143

Query: 127 -----QVHERREIGDLIGIG----------------------------SEYTELKKRGLC 158
                 V     +G++ G+G                            +   +L+ RGLC
Sbjct: 144 RKIEDYVSSSFVMGNIRGMGDHQIQIQEGGEQKVTLMRNLIDGNNNNNNNNMDLRSRGLC 203

The following BLAST results are available for this feature:

BLAST of CmoCh09G009330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5BPG5	1.3e-07	28.14	Vascular-related unknown protein 4 OS=Arabidopsis thaliana OX=3702 GN=VUP4 PE=2 ...	[more]
Q9LSZ3	6.8e-04	23.16	Vascular-related unknown protein 1 OS=Arabidopsis thaliana OX=3702 GN=VUP1 PE=2 ...	[more]

BLAST of CmoCh09G009330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG95	1.7e-85	88.89	Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1	[more]
A0A6J1IHA8	2.3e-79	83.33	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1	[more]
A0A6J1IG62	5.7e-70	77.22	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1	[more]
A0A6J1FA17	2.6e-62	83.56	Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1	[more]
A0A6J1IMM8	1.1e-57	79.86	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1	[more]

BLAST of CmoCh09G009330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937320.1	3.4e-85	88.89	vascular-related unknown protein 4-like isoform X1 [Cucurbita moschata]	[more]
XP_022976591.1	4.8e-79	83.33	vascular-related unknown protein 4-like isoform X1 [Cucurbita maxima]	[more]
XP_023534855.1	2.1e-71	78.89	vascular-related unknown protein 4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7024902.1	3.1e-70	85.00	hypothetical protein SDJN02_13722, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022976592.1	1.2e-69	77.22	vascular-related unknown protein 4-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CmoCh09G009330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54790.1	9.5e-09	28.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G21710.2	4.9e-05	23.16	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 4..102
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 121..158
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 4..102
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 121..158

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh09G009330	CmoCh09G009330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G009330.1:exon:1060	CmoCh09G009330.1:exon:1060	exon
CmoCh09G009330.1:exon:1059	CmoCh09G009330.1:exon:1059	exon
CmoCh09G009330.1:exon:1058	CmoCh09G009330.1:exon:1058	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G009330.1:three_prime_utr	CmoCh09G009330.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G009330.1:cds	CmoCh09G009330.1:cds_3	CDS
CmoCh09G009330.1:cds	CmoCh09G009330.1:cds_2	CDS
CmoCh09G009330.1:cds	CmoCh09G009330.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh09G009330.1	CmoCh09G009330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development