CmoCh08G004720.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G004720.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	WRKY transcription factor
Location	Cmo_Chr08: 2911698 .. 2912749 (+)
Sequence length	851
RNA-Seq Expression	CmoCh08G004720.1
Synteny	CmoCh08G004720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCCTCAATTCTCTCTCTAAAAGCCTTATTTCACGGGTAGGGTTTATGGAGCTTGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTACCCAATTCAAAATCCTGCTATCGACCCCGAGAATTTGGAGATATTGAATGCATGGCCTACATCGTCCACCCAGCTCATCAACGATGAATTGTCGGAGTTGAAGCTACAAGAAGAAGAGAAACCTCGACCAAAAACGGTTAAACCTAACCACTCGTTAGTGTTCCGTCTTTTTTTTTCTCTTTTTAATTCAACAATATTTAGAGGCAAATATCATTTGTTGATGTATTTAAAACATTAAATTTAGGTCGAAAACAAAGAAAACGAATCAGAAGAAGAAAGAGCAAGAACAACGATACACGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGCTGTAAAAAACAGCCCTTATCCTAGGTAATATCGTTGTACTCAAATTACTATTATACCCTAAATCTTATGGTGCACGGATGTTTCTAACATGTTTTTTTTTTCTTTTTGTAGGAGCTATTATCGTTGTACTAGTGTAGCATGTAATGTAAAGAAACGAGTGGAGAGATGCTTGAAAGATCCCAGCATTGTTATCACAACTTATGAAGGCCAACACCCTCACTCTACCCCTGTCATGGCTCGATCAACCTTCGTCCCTCCGCCTATCTCTACCTCTCTCCACGAGGGTTCCACATCGTTCACCTCCACCCCTCCTTATCTCTTTCACAACCAAAACGTTCATAATTTAAATTTTGCCCGCCACCCCAATGACTTTGTGGCACCGTCATTTCATCACGAGCGATTGCCACAACACACTGCCTCCTTCGATCCACCTACTCATTTATTTGCTTCTACTACTAATTATGAGTTACTTCAAGATGTTAGTTGGTCGACATGATGTATTGTAACAGCCCAAGTTCACTACTAACAGATATTATCTACTTTGACCCGTTATGTTTCGCCGTCAGCTTCACGATTTTAAAACGC

mRNA sequence

AACCCCTCAATTCTCTCTCTAAAAGCCTTATTTCACGGGTAGGGTTTATGGAGCTTGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTACCCAATTCAAAATCCTGCTATCGACCCCGAGAATTTGGAGATATTGAATGCATGGCCTACATCGTCCACCCAGCTCATCAACGATGAATTGTCGGAGTTGAAGCTACAAGAAGAAGAGAAACCTCGACCAAAAACGGTTAAACCTAACCACTCGTCGAAAACAAAGAAAACGAATCAGAAGAAGAAAGAGCAAGAACAACGATACACGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGCTGAGCTATTATCGTTGTACTAGTGTAGCATGTAATGTAAAGAAACGAGTGGAGAGATGCTTGAAAGATCCCAGCATTGTTATCACAACTTATGAAGGCCAACACCCTCACTCTACCCCTGTCATGGCTCGATCAACCTTCGTCCCTCCGCCTATCTCTACCTCTCTCCACGAGGGTTCCACATCGTTCACCTCCACCCCTCCTTATCTCTTTCACAACCAAAACGTTCATAATTTAAATTTTGCCCGCCACCCCAATGACTTTGTGGCACCGTCATTTCATCACGAGCGATTGCCACAACACACTGCCTCCTTCGATCCACCTACTCATTTATTTGCTTCTACTACTAATTATGAGTTACTTCAAGATGTTAGTTGGTCGACATGATGTATTGTAACAGCCCAAGTTCACTACTAACAGATATTATCTACTTTGACCCGTTATGTTTCGCCGTCAGCTTCACGATTTTAAAACGC

Coding sequence (CDS)

ATGGAGCTTGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTACCCAATTCAAAATCCTGCTATCGACCCCGAGAATTTGGAGATATTGAATGCATGGCCTACATCGTCCACCCAGCTCATCAACGATGAATTGTCGGAGTTGAAGCTACAAGAAGAAGAGAAACCTCGACCAAAAACGGTTAAACCTAACCACTCGTCGAAAACAAAGAAAACGAATCAGAAGAAGAAAGAGCAAGAACAACGATACACGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGCTGAGCTATTATCGTTGTACTAG

Protein sequence

MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY

Homology

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy Swiss-Prot
Match: O22900 (WRKY transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 16  SSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSKTK-K 75
           S + + NP   P +  I +A    S++ +N+E  + +  EEE    +  K +   + K K
Sbjct: 95  SDHLLINPPATPNSSSISSA----SSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAK 154

Query: 76  TNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
            N +K+++E R  FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 155 KNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKA 186

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy Swiss-Prot
Match: Q8VWJ2 (WRKY transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 71  KTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           KTKKT + KK++E R +FMTKS+VDHLEDGYRWRKYGQKA   S Y
Sbjct: 146 KTKKT-EVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPY 190

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy Swiss-Prot
Match: Q9FGZ4 (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana OX=3702 GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 8   SQFDMFSTSSYPIQN-----------PAIDPENLEILNAWPT---------SSTQLINDE 67
           S    FS  ++P+ N           P    E+ E++N  PT         SS +  ND 
Sbjct: 108 SNSSSFSFDAFPLPNNNNNTSFFTDLPLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDN 167

Query: 68  LS----ELKLQEE--EKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGY 117
            S     +K QEE  ++   K  KP    K KK NQ KK +E R+ F+TKS +D+L+DGY
Sbjct: 168 NSGKEVTVKDQEEGDQQQEQKGTKP--QLKAKKKNQ-KKAREARFAFLTKSDIDNLDDGY 227

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy Swiss-Prot
Match: Q93WV4 (WRKY transcription factor 71 OS=Arabidopsis thaliana OX=3702 GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 13  FSTSSYPIQ--NPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHS- 72
           FS  S P Q  +P+++   L +     TS++ +++   +E + +E    +   ++ N   
Sbjct: 42  FSPYSSPFQSVSPSVNNPYLNL-----TSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGD 101

Query: 73  -----------SKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
                      +K  K   +KKE+E R  FMTKS++DHLEDGYRWRKYGQKA   S Y
Sbjct: 102 LHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPY 154

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy Swiss-Prot
Match: Q9S763 (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana OX=3702 GN=WRKY45 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.2e-07
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 63  TVKPNHSSKTK-KTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           + +P  SS+ K ++ +KKKE+E RY F T+S+VD L+DGYRWRKYGQKA
Sbjct: 29  SAQPTTSSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKA 77

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy TrEMBL
Match: A0A6J1H8E8 (probable WRKY transcription factor 23 OS=Cucurbita moschata OX=3662 GN=LOC111461005 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60
           MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR
Sbjct: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60

Query: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA   S Y
Sbjct: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAVKNSPY 116

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy TrEMBL
Match: A0A6J1KV59 (probable WRKY transcription factor 23 OS=Cucurbita maxima OX=3661 GN=LOC111497872 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.6e-43
Identity = 99/116 (85.34%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60
           MELDLIWSQFDMFSTSS PIQNP IDPENLEILNAW TSS+QLINDELSEL L EE+KPR
Sbjct: 1   MELDLIWSQFDMFSTSSSPIQNPVIDPENLEILNAWLTSSSQLINDELSELNL-EEQKPR 60

Query: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
            KTVK N  SKTKKTNQKKKEQEQRY FMTKSKVDHLEDGYRWRKYGQK    S Y
Sbjct: 61  QKTVKSNPLSKTKKTNQKKKEQEQRYMFMTKSKVDHLEDGYRWRKYGQKVVKNSPY 115

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy TrEMBL
Match: A0A6J1JVC0 (probable WRKY transcription factor 23 OS=Cucurbita maxima OX=3661 GN=LOC111488179 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 8   SQFDMFSTSSYP---IQNPAIDPENLEILNAWPT----------SSTQLINDELSELKLQ 67
           SQFD+FSTSS     I NP    ENLEI N WPT          +S++++NDE+ E KL+
Sbjct: 35  SQFDVFSTSSLSSSLISNPI---ENLEIWNQWPTTPNYSSSISSTSSEIVNDEVIEPKLE 94

Query: 68  EEEKPRPK-TVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELL 117
            E+K   + T+K +  SKT+KT++KKK+QE R+ FMTKS+VDHLEDGYRWRKYGQKA   
Sbjct: 95  REKKQHSRQTLKTDKQSKTRKTSRKKKDQEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKN 154

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy TrEMBL
Match: A0A6J1GMG2 (probable WRKY transcription factor 23 OS=Cucurbita moschata OX=3662 GN=LOC111455851 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 8   SQFDMFSTSSYP---IQNPAIDPENLEILNAWPT-----SSTQLINDELSELKLQEEEKP 67
           SQFD+FS SS     I NP    ENLEI N WPT     SS++++NDE+ E KL+ EEK 
Sbjct: 35  SQFDVFSLSSLSSSLITNPV---ENLEIGNQWPTTSNYSSSSEIVNDEVIEPKLEREEKQ 94

Query: 68  RPK-TVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
             + T+K +   KTKK  +KKK+QE R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 95  HSRQTLKTDKQMKTKKMTRKKKDQEPRFAFMTKSEVDHLEDGYRWRKYGQKA 143

[Close]

BLAST of CmoCh08G004720.1 vs. ExPASy TrEMBL
Match: A0A5D3D3X9 (Putative WRKY transcription factor 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001840 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 8   SQFDMFSTSSYPIQNPAI-DPENLEILNAWPT----------SSTQLINDELSELKLQ-- 67
           SQFD+F TSS  + +  I +PENLEI N WPT          +S++++N EL+E  L+  
Sbjct: 38  SQFDVFETSSPSLSSSLISNPENLEIWNQWPTTPNYSSSISSTSSEIVNGELTEPNLEGG 97

Query: 68  EEEKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           EE++ R  TVK +   KTKK + KKK  E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 98  EEKQDRQPTVKTDKQLKTKKRSPKKKGVEPRFAFMTKSEVDHLEDGYRWRKYGQKA 153

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: KAG7025602.1 (putative WRKY transcription factor 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60
           MELDLIWSQFDMFSTSSYPIQN AIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR
Sbjct: 1   MELDLIWSQFDMFSTSSYPIQNSAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60

Query: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY
Sbjct: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 116

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: XP_022960195.1 (probable WRKY transcription factor 23 [Cucurbita moschata])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60
           MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR
Sbjct: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60

Query: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA   S Y
Sbjct: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAVKNSPY 116

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: XP_023513700.1 (probable WRKY transcription factor 45 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60
           MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSS+QLINDELSEL L+EE+KPR
Sbjct: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSSQLINDELSELNLEEEKKPR 60

Query: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
            KTVK NHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA   S Y
Sbjct: 61  QKTVKSNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAVKNSPY 116

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: XP_023004640.1 (probable WRKY transcription factor 23 [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 99/116 (85.34%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MELDLIWSQFDMFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPR 60
           MELDLIWSQFDMFSTSS PIQNP IDPENLEILNAW TSS+QLINDELSEL L EE+KPR
Sbjct: 1   MELDLIWSQFDMFSTSSSPIQNPVIDPENLEILNAWLTSSSQLINDELSELNL-EEQKPR 60

Query: 61  PKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
            KTVK N  SKTKKTNQKKKEQEQRY FMTKSKVDHLEDGYRWRKYGQK    S Y
Sbjct: 61  QKTVKSNPLSKTKKTNQKKKEQEQRYMFMTKSKVDHLEDGYRWRKYGQKVVKNSPY 115

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: KAG6593251.1 (WRKY transcription factor 23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 12  MFSTSSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSK 71
           MFSTSS  IQNPAI PEN +ILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSK
Sbjct: 1   MFSTSSSLIQNPAIVPENSKILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSK 60

Query: 72  TKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           TKK NQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA   S Y
Sbjct: 61  TKKANQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAVKNSPY 105

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR 10
Match: AT2G47260.1 (WRKY DNA-binding protein 23 )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 16  SSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSKTK-K 75
           S + + NP   P +  I +A    S++ +N+E  + +  EEE    +  K +   + K K
Sbjct: 95  SDHLLINPPATPNSSSISSA----SSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAK 154

Query: 76  TNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
            N +K+++E R  FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 155 KNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKA 186

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR 10
Match: AT4G18170.1 (WRKY DNA-binding protein 28 )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 71  KTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           KTKKT + KK++E R +FMTKS+VDHLEDGYRWRKYGQKA   S Y
Sbjct: 146 KTKKT-EVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPY 190

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR 10
Match: AT5G49520.1 (WRKY DNA-binding protein 48 )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 8   SQFDMFSTSSYPIQN-----------PAIDPENLEILNAWPT---------SSTQLINDE 67
           S    FS  ++P+ N           P    E+ E++N  PT         SS +  ND 
Sbjct: 108 SNSSSFSFDAFPLPNNNNNTSFFTDLPLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDN 167

Query: 68  LS----ELKLQEE--EKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGY 117
            S     +K QEE  ++   K  KP    K KK NQ KK +E R+ F+TKS +D+L+DGY
Sbjct: 168 NSGKEVTVKDQEEGDQQQEQKGTKP--QLKAKKKNQ-KKAREARFAFLTKSDIDNLDDGY 227

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR 10
Match: AT1G29860.1 (WRKY DNA-binding protein 71 )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 13  FSTSSYPIQ--NPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHS- 72
           FS  S P Q  +P+++   L +     TS++ +++   +E + +E    +   ++ N   
Sbjct: 42  FSPYSSPFQSVSPSVNNPYLNL-----TSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGD 101

Query: 73  -----------SKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
                      +K  K   +KKE+E R  FMTKS++DHLEDGYRWRKYGQKA   S Y
Sbjct: 102 LHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPY 154

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR 10
Match: AT3G01970.1 (WRKY DNA-binding protein 45 )

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-08
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 63  TVKPNHSSKTK-KTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           + +P  SS+ K ++ +KKKE+E RY F T+S+VD L+DGYRWRKYGQKA
Sbjct: 29  SAQPTTSSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKA 77

The following BLAST results are available for this feature:

BLAST of CmoCh08G004720.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22900	1.8e-09	42.71	WRKY transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=WRKY23 PE=2 SV=1	[more]
Q8VWJ2	1.9e-08	71.74	WRKY transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=WRKY28 PE=2 SV=1	[more]
Q9FGZ4	1.9e-08	38.52	Probable WRKY transcription factor 48 OS=Arabidopsis thaliana OX=3702 GN=WRKY48 ...	[more]
Q93WV4	6.3e-07	35.59	WRKY transcription factor 71 OS=Arabidopsis thaliana OX=3702 GN=WRKY71 PE=2 SV=1	[more]
Q9S763	8.2e-07	59.18	Probable WRKY transcription factor 45 OS=Arabidopsis thaliana OX=3702 GN=WRKY45 ...	[more]

BLAST of CmoCh08G004720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8E8	1.2e-53	96.55	probable WRKY transcription factor 23 OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1KV59	9.6e-43	85.34	probable WRKY transcription factor 23 OS=Cucurbita maxima OX=3661 GN=LOC11149787...	[more]
A0A6J1JVC0	1.8e-20	54.47	probable WRKY transcription factor 23 OS=Cucurbita maxima OX=3661 GN=LOC11148817...	[more]
A0A6J1GMG2	1.1e-19	58.04	probable WRKY transcription factor 23 OS=Cucurbita moschata OX=3662 GN=LOC111455...	[more]
A0A5D3D3X9	2.2e-18	53.45	Putative WRKY transcription factor 23 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CmoCh08G004720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025602.1	1.6e-55	99.14	putative WRKY transcription factor 23, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022960195.1	2.5e-53	96.55	probable WRKY transcription factor 23 [Cucurbita moschata]	[more]
XP_023513700.1	1.3e-49	91.38	probable WRKY transcription factor 45 [Cucurbita pepo subsp. pepo]	[more]
XP_023004640.1	2.0e-42	85.34	probable WRKY transcription factor 23 [Cucurbita maxima]	[more]
KAG6593251.1	2.2e-41	90.48	WRKY transcription factor 23, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh08G004720.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47260.1	1.2e-10	42.71	WRKY DNA-binding protein 23	[more]
AT4G18170.1	1.4e-09	71.74	WRKY DNA-binding protein 28	[more]
AT5G49520.1	1.4e-09	38.52	WRKY DNA-binding protein 48	[more]
AT1G29860.1	4.4e-08	35.59	WRKY DNA-binding protein 71	[more]
AT3G01970.1	5.8e-08	59.18	WRKY DNA-binding protein 45	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036576	WRKY domain superfamily	GENE3D	2.20.25.80	WRKY domain	coord: 84..114 e-value: 1.1E-8 score: 36.6
IPR036576	WRKY domain superfamily	SUPERFAMILY	118290	WRKY DNA-binding domain	coord: 89..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..87
None	No IPR available	PANTHER	PTHR31221:SF238	WRKY TRANSCRIPTION FACTOR 48-RELATED	coord: 24..110
IPR044810	WRKY transcription factor, plant	PANTHER	PTHR31221	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	coord: 24..110
IPR003657	WRKY domain	PROSITE	PS50811	WRKY	coord: 92..109 score: 8.799786

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G004720	CmoCh08G004720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1:exon:6989	CmoCh08G004720.1:exon:6989	exon
CmoCh08G004720.1:exon:6990	CmoCh08G004720.1:exon:6990	exon
CmoCh08G004720.1:exon:6991	CmoCh08G004720.1:exon:6991	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1:five_prime_utr	CmoCh08G004720.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1:cds	CmoCh08G004720.1:cds	CDS
CmoCh08G004720.1:cds	CmoCh08G004720.1:cds_2	CDS
CmoCh08G004720.1:cds	CmoCh08G004720.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1:three_prime_utr	CmoCh08G004720.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1	CmoCh08G004720.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding