CmoCh08G001790.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G001790.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF 3339)
Location	Cmo_Chr08: 1053587 .. 1054794 (-)
Sequence length	339
RNA-Seq Expression	CmoCh08G001790.1
Synteny	CmoCh08G001790.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGGTTCATCTCTACATTGGTTAATCGAGCTTCACCTCTACTTTTGTTCGTTTCTAATTCTTCCACCAAATGCATAGTCACTTCAACTTTGTTTTGATTAGTTTGTTCTAAATATTCGGTCGATGTCCTAGGTTTTCAAGTACGTGTAGCAAAATTGTTGAGTTATCGAACATATAGTAGGCTTCATCATTTCAAAGTTGTGCTATCTTGAGGCTTTGTATTGGCTATGGACGTTTTTCTTTAAGATCTGAACTTTATCCTTCGACCCATTTAACAAAACTCACTTGAATGAATATGGTTAATCTAAACGAACATAAAGTTGAACAATTTTAGTGCACTTGGGGTTGGGGGTTGGATGTTACACAAACAAATAGCTCTAAAAGTGTGAGATCCCACATCAACCGGAAAAGGAACAAGTACCAACAAAGCTAGACAAGGATTGTGAGATCTCACATCGATTTGAGAAGGGAACGAAACATTTTTTATAAGAATGTAGAAACCTCTTCCTAATAAACCCATTTTGAAAACCTTGAGGGGAAGCCCAAAAGAAAAAGCTCAAAGAAGACATGTTAGTGGTAGACTTAGACTGATACCTGAGAGTCTAAGCTAAGATTTCTCTGAAAGACGAAACCTATAACAGCCCAGATCCACCGCTAGCAGATATTGTCCTACTTGGACTTTCCCTTTCGGGCTTCCCCTCAAAGTTTTAAAACGCGTTTGCTAGGGAAAGGTTTTCACACCCTTATAACGGGTGTTTTGGTCTCCTCCCCAACCAACGTGGGACATCACATGGGACATCACAAAACCTCCGACACCATGAAAATGAACCTTCACAATTGTTACGACATTTTTTATTTCTTTTTGTTTTATAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

mRNA sequence

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

Coding sequence (CDS)

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

Protein sequence

MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLLAIKPNRHFKQWQLHIWTQSLKSRKIHNTMSLHNLKKQQTVVNNSNFILPICF

Homology

[Close]

BLAST of CmoCh08G001790.1 vs. ExPASy TrEMBL
Match: A0A6J1KVP8 (uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. ExPASy TrEMBL
Match: A0A6J1H7E6 (uncharacterized protein LOC111461116 OS=Cucurbita moschata OX=3662 GN=LOC111461116 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. ExPASy TrEMBL
Match: A0A6J1JSS9 (uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. ExPASy TrEMBL
Match: A0A6J1JUR0 (uncharacterized protein LOC111488037 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. ExPASy TrEMBL
Match: A0A0A0KAG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. NCBI nr
Match: XP_022960371.1 (uncharacterized protein LOC111461116 [Cucurbita moschata] >XP_023004229.1 uncharacterized protein LOC111497623 [Cucurbita maxima] >XP_023513527.1 uncharacterized protein LOC111778105 [Cucurbita pepo subsp. pepo] >KAG7025376.1 hypothetical protein SDJN02_11871, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. NCBI nr
Match: XP_022953200.1 (uncharacterized protein LOC111455815 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. NCBI nr
Match: XP_011656810.1 (uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical protein Csa_005508 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. NCBI nr
Match: XP_022991384.1 (uncharacterized protein LOC111488037 isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. NCBI nr
Match: XP_022991385.1 (uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785.1 uncharacterized protein LOC111778992 [Cucurbita pepo subsp. pepo] >KAG7014656.1 hypothetical protein SDJN02_24835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790.1 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-22
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPV V VILFV+LTPGLLFQLPG ++ +EFGNF TSA +++VHSLLYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIK 64
          A+K
Sbjct: 61 ALK 63

[Close]

BLAST of CmoCh08G001790.1 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPV VAVILFVLLTPGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIKPNRHFKQWQLHIWT 78
          AI+         LHI+T
Sbjct: 61 AIR---------LHIYT 68

[Close]

BLAST of CmoCh08G001790.1 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M DWGPVFVAV LFVLLTPGLL Q+PG  R +EFG F TS  +++VH+L+YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIK 64
          A++
Sbjct: 61 ALQ 63

[Close]

BLAST of CmoCh08G001790.1 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-18
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPV +AVILFV+L+PGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AI 63
          AI
Sbjct: 61 AI 62

[Close]

BLAST of CmoCh08G001790.1 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-17
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 2  ADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLLA 61
          ADWGPV VAV LF+LL+PGLLFQLP   R +EFGN  TS  +I+VH+++YF ++ + ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IKPNRHF 69
          I+ + HF
Sbjct: 63 IQIHIHF 69

The following BLAST results are available for this feature:

BLAST of CmoCh08G001790.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G001790.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVP8	9.3e-27	100.00	uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623...	[more]
A0A6J1H7E6	9.3e-27	100.00	uncharacterized protein LOC111461116 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1JSS9	2.7e-26	96.83	uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JUR0	2.7e-26	96.83	uncharacterized protein LOC111488037 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KAG8	2.7e-26	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1	[more]

BLAST of CmoCh08G001790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960371.1	1.9e-26	100.00	uncharacterized protein LOC111461116 [Cucurbita moschata] >XP_023004229.1 unchar...	[more]
XP_022953200.1	5.6e-26	96.83	uncharacterized protein LOC111455815 [Cucurbita moschata]	[more]
XP_011656810.1	5.6e-26	95.24	uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical ...	[more]
XP_022991384.1	5.6e-26	96.83	uncharacterized protein LOC111488037 isoform X1 [Cucurbita maxima]	[more]
XP_022991385.1	5.6e-26	96.83	uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785...	[more]

BLAST of CmoCh08G001790.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	1.4e-22	73.02	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	1.9e-19	59.74	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	7.1e-19	63.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G63500.1	4.6e-18	62.90	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	5.1e-17	55.22	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..63 e-value: 1.3E-31 score: 108.5
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR33128:SF62	SUBFAMILY NOT NAMED	coord: 1..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G001790	CmoCh08G001790	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001790.1:exon:6036	CmoCh08G001790.1:exon:6036	exon
CmoCh08G001790.1:exon:6037	CmoCh08G001790.1:exon:6037	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001790.1:cds	CmoCh08G001790.1:cds_2	CDS
CmoCh08G001790.1:cds	CmoCh08G001790.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001790.1	CmoCh08G001790.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane